DY260327

Overview
NameDY260327
Unique NameDY260327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260327_ssr114 microsatellite DY260327_ssr114:114..125. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1485 contig Ccv1_Contig1485:1..1241. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260327 vs. ExPASy Swiss-Prot
Match: LVSC_DICDI (BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.386e-11
Identity = 46/153 (30.07%), Postives = 76/153 (49.67%), Query Frame = 1 
Query:   16 FSIGTKIKMQQNEGDNVLERIQDCFPFLGQIGPIYLFNDAISSEQVKGVHSLGPSYMYSFLDNEAAPSYDNQLPSGILDAKDGLASKIIFGLNAQASSGKKLFNVSPMLDLASDKNSFEANVMIGTQLCSRRLLQQIIYCVGGVSVFFPLIAQ 474
            F IG   K    E        ++C P  GQ+G   +F++++S  Q++ +++LGP++  SF D E +    +   S        L S +    N +A  G    + +P  D+  DKN ++A  ++    C  R ++ IIYC+GG+ V FPLI Q
Sbjct:  371 FKIGNNSKKMSGE--------REC-PLYGQMGAFNIFDESLSPSQIQAIYTLGPNFNTSFQDVEGSTKSAHTFES-------SLTSHLFLNYNCRALDGDLCLDNTP--DIGGDKN-YDA-TLVSINPCVSRDIKDIIYCLGGIKVLFPLIQQ 503
The following BLAST results are available for this feature:
BLAST of DY260327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LVSC_DICDI1.386e-1130.07BEACH domain-containing protein lvsC OS=Dictyostel... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YC15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260327 ID=DY260327; Name=DY260327; organism=Citrus clementina; type=EST; length=1241bp
GAAGTATTGACAATCTTTTCAATTGGCACAAAGATTAAAATGCAACAAAA
TGAAGGAGATAATGTTCTTGAACGGATACAAGATTGCTTTCCTTTCCTCG
GTCAGATTGGTCCTATTTATTTATTCAATGATGCTATTTCTTCTGAGCAA
GTCAAGGGTGTTCATTCCCTAGGACCAAGCTACATGTATTCATTCCTTGA
TAATGAAGCTGCACCCAGTTATGATAACCAATTGCCTAGTGGTATCCTTG
ATGCTAAAGATGGTCTTGCATCAAAAATCATTTTTGGACTCAATGCTCAG
GCTAGTAGTGGCAAAAAGTTGTTTAATGTCTCACCGATGCTGGACCTTGC
ATCAGACAAGAATTCTTTTGAAGCAAATGTAATGATTGGAACACAGTTAT
GTTCACGACGCTTGCTTCAGCAAATAATCTACTGTGTTGGTGGTGTGTCT
GTATTTTTCCCACTTATTGCACAGTCTGATAGGTATGAAAATGAAGAAAG
TGGAGTCCTTTGTACATGCCTTGCATATGCCTATCCCGAAAGACCGTTTG
ACGGCTGACGTTATTGGGGCCACACCCATCCGTCTTAGATGACAATCCAT
CCAGACCACCAAAAATGTCATCTCCATACTGGAATTTCCGAACAGACGGC
CTCCACTACAATCCCATCACACCATCCTCCCTTATACTTGGGATCCCTTA
CCCACCAAAGACCACATATCAAATTAATTAGACCCCCTCCCCTACAGCAT
CCGTTAATCGTTGATACACTACTACTTCAGTCTTACACTCCGCCTCCCCC
CAACCCCTCACGCCCACCCCTCTCCCCCACACACACTCACTTGCCTCACG
ACACCTCGCCACAACATCCTTGTCTCTTGTCTAAACCTCTTCTACTCCAA
CAATCCCTGACATCCACGCAGACCACAAATCAACCACCACCCGATACACA
AATCCCACAACAACCCCCACCCCAACCCCCCACGACCACCACGTAACTCA
CCAAGTTCAGACTCATAACACACTAACCTCCTTCACTTCCGTCCCACCCC
CTCACAACTCCACCCACACAATCCACCCACTCCATTCCGACCGATCAACA
CTATTATACTTCACAAACGCTCGTGACTTACCATTCGTCACCCCACACCT
ATTACACTCAAAGAACCACAATACGGCTCACGCCCAACCGATCACCCTCA
TACCCTATCACTCGATCCACTCTCCCCCCTAACACCCACAC
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