DY260335

Overview
NameDY260335
Unique NameDY260335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1264
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3344 contig Ccv1_Contig3344:555..1818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPAM_ARATH (ATP synthase subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=ATPA PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 3.031e-54
Identity = 107/120 (89.17%), Postives = 116/120 (96.67%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELEPFLKQSAL 360
            AMK+VCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPL++I+QYEKAIL+S+ P+LLQAL GGLTNERKMEL+ FLK+ AL
Sbjct:  385 AMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAILNSVKPELLQALKGGLTNERKMELDAFLKERAL 504          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPAM_PHAVU (ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.408e-51
Identity = 103/122 (84.43%), Postives = 113/122 (92.62%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELEPFLKQSALPY 366
            AMK+ CGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPL+KI QYE+ IL++I P+LLQ+L GGLT+ERK+ELE FLK+ A  Y
Sbjct:  385 AMKQACGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDKIPQYERDILTTIKPELLQSLKGGLTSERKIELEKFLKEKAKNY 506          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPAM_SOYBN (ATP synthase subunit alpha, mitochondrial OS=Glycine max GN=ATPA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.839e-51
Identity = 103/122 (84.43%), Postives = 113/122 (92.62%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELEPFLKQSALPY 366
            AMK+VCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPL+KI QYE+ IL++I P+LLQ+L GGLT+ERK+ELE FLK+    Y
Sbjct:  385 AMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDKIPQYERDILTTIKPELLQSLKGGLTSERKIELEKFLKEKGGTY 506          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.136e-51
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELEPFLKQSALPY 366
            AMK+VCGS KLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEV KQPQYAPLPIEKQILVIYAAVNGFCDRMPL+KI+QYE+ I +S+ P+LLQ+L GGLTNE+KMEL+ FLK+ AL Y
Sbjct:  385 AMKQVCGSPKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDKISQYERTIPNSVKPELLQSLKGGLTNEKKMELDSFLKECALNY 506          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPAM_RAPSA (ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus GN=ATPA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.096e-51
Identity = 103/120 (85.83%), Postives = 112/120 (93.33%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELEPFLKQSAL 360
            AMK+VCGS KLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEV KQPQYAPLPIEKQILVIYAAVNGFCDRMPL++I+QYEKAI +S+ P+LLQAL GGLTNERKME + FLK+ AL
Sbjct:  385 AMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELLQALKGGLTNERKMEPDAFLKERAL 504          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPAM_BRANA (ATP synthase subunit alpha, mitochondrial OS=Brassica napus GN=ATPA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.096e-51
Identity = 103/120 (85.83%), Postives = 112/120 (93.33%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELEPFLKQSAL 360
            AMK+VCGS KLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEV KQPQYAPLPIEKQILVIYAAVNGFCDRMPL++I+QYEKAI +S+ P+LLQAL GGLTNERKME + FLK+ AL
Sbjct:  385 AMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELLQALKGGLTNERKMEPDAFLKERAL 504          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPAM_BRACM (ATP synthase subunit alpha, mitochondrial OS=Brassica campestris GN=ATPA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.096e-51
Identity = 103/120 (85.83%), Postives = 112/120 (93.33%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELEPFLKQSAL 360
            AMK+VCGS KLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEV KQPQYAPLPIEKQILVIYAAVNGFCDRMPL++I+QYEKAI +S+ P+LLQAL GGLTNERKME + FLK+ AL
Sbjct:  385 AMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELLQALKGGLTNERKMEPDAFLKERAL 504          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPAM_PEA (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum GN=ATPA PE=3 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 6.987e-51
Identity = 103/120 (85.83%), Postives = 112/120 (93.33%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELEPFLKQSAL 360
            AMK+VCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPL+KIAQYE+ ILS+I  +LLQ+L GGLT ERK+E + FLK+ AL
Sbjct:  385 AMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDKIAQYERDILSTIKQELLQSLKGGLTGERKIEPDAFLKEKAL 504          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 5.915e-50
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 1
Query:    4 MKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALL--GGLTNERKMELEPFLKQSALPY 366
            MK+VCGS KLELAQYREVAA AQFGSDLDAATQALLNRGARLTEV KQPQYAPLPIEKQILVIYAAVNGFCDRMPL++I+QYE+AIL SI  +LLQ+LL  GGLTNERKME + FLK+ ALPY
Sbjct:  386 MKQVCGSSKLELAQYREVAALAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYERAILKSIKTELLQSLLEKGGLTNERKMEPDTFLKECALPY 508          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSJ (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPA PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.009e-49
Identity = 101/121 (83.47%), Postives = 113/121 (93.39%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQAL--LGGLTNERKMELEPFLKQSA 357
            AMK+VCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEV KQPQY PLPIEKQI+VIYAAVNGFCDRMPL++I+QYEKAILS+I P+LL++    GGLTNERK+EL+ FLKQ+A
Sbjct:  385 AMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQPQYEPLPIEKQIVVIYAAVNGFCDRMPLDRISQYEKAILSTINPELLKSFNEKGGLTNERKIELDAFLKQTA 505          
The following BLAST results are available for this feature:
BLAST of DY260335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPAM_ARATH3.031e-5489.17ATP synthase subunit alpha, mitochondrial OS=Arabi... [more]
ATPAM_PHAVU1.408e-5184.43ATP synthase subunit alpha, mitochondrial OS=Phase... [more]
ATPAM_SOYBN1.839e-5184.43ATP synthase subunit alpha, mitochondrial OS=Glyci... [more]
ATPAM_BETVU3.136e-5183.61ATP synthase subunit alpha, mitochondrial OS=Beta ... [more]
ATPAM_RAPSA4.096e-5185.83ATP synthase subunit alpha, mitochondrial OS=Rapha... [more]
ATPAM_BRANA4.096e-5185.83ATP synthase subunit alpha, mitochondrial OS=Brass... [more]
ATPAM_BRACM4.096e-5185.83ATP synthase subunit alpha, mitochondrial OS=Brass... [more]
ATPAM_PEA6.987e-5185.83ATP synthase subunit alpha, mitochondrial OS=Pisum... [more]
ATPAM_HELAN5.915e-5083.74ATP synthase subunit alpha, mitochondrial OS=Helia... [more]
ATPAM_ORYSJ1.009e-4983.47ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260335 ID=DY260335; Name=DY260335; organism=Citrus clementina; type=EST; length=1264bp
GCTATGAAAAAAGTTTGCGGTAGTTTAAAACTGGAGTTGGCACAATATCG
CGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTC
AGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAGCCG
CAATATGCGCCGCTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGC
TGTTAATGGGTTCTGTGATCGAATGCCACTAGAAAAAATTGCACAATATG
AGAAAGCCATTCTAAGTAGTATAACCCCGGATTTACTACAAGCACTTTTA
GGGGGGTTAACTAACGAAAGAAAGATGGAATTAGAACCTTTCTTAAAACA
AAGCGCTTTGCCTTACCTATGATGTAAGGCAAGGTCGCCCGCGACTGACA
AACTAAATCTCCTTTTCTTCTGAAGTCCCCTAATTATGGTATGGATCCTG
TCTCCAGTACCAATACCAATCCACAACTCATGCTTCTCTGAATACTCAGC
TATTCTTAGAAAACATTCCCTCATCTTCCTGTCACAAATTGCAGGTCTTT
ATTACACTACAACCCGTCCCCATTTGTTATCCCTAATCCTATACCCAATC
TGCTACCCAAACAACACAACCACAACTAAACAGCAGCGCCCCACCTGACG
CTACCTTCTAACCTGCCCAGGCCTTCTCATCTCTCTCCCACCCTCCCCTC
CCCGTCATCACGCTCACCTTATTCAAACTCATGACTCTCTACTTGCACAG
CAAACAGGTAACAGCCCATCCGCCTGACACAATCACTATCTTCACTACTA
CAAGCCTTCCCTCTACCACAGGACGCGCATGGACTCCTTCTATCATACAC
TACCAAACTACAACCTAAGCAACCTCTATATGAGTCAACAGAGAAAAAAA
CGACAACTTGCTACCAAACATCACGTGAGATTTAATAAAACGCCTCCCCA
CCAACAACACAAAATTCTACGTAATACACTAACTCCAGAGACTGCTCTGT
CTTTAATGCAAGACCCCTCCCTGACCCTATCTCCGTAAACTTTCCTCTCC
CCTCCACCCGCACGACGTACCTCCTACCCCCCACTCTCACTCACCCATTT
AATTTCTCTACACTCCAGCCCCCACGACAGGCGATCAATCTGAATCTGCA
CTAAATAAAGACTTACCCTCTTCGTCCCAAACATGTCCCGACCGTCTTCC
GTTGTACCCGCGCCACACCATTCTTATTTCTACCTTTAACTATTTAACTT
CACTACGCTTTGTA
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