DY260336

Overview
NameDY260336
Unique NameDY260336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260336_ssr47 microsatellite DY260336_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260336_ssr95 microsatellite DY260336_ssr95:95..109. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.666e-84
Identity = 156/180 (86.67%), Postives = 162/180 (90.00%), Query Frame = 2
Query:   77 FHHLIXXXXXXXXMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGG--MVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQT 610
            +HHL+        +FW+YQRQEIEQ NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAA LGG  +V  TASGVPYYYPPMGQP   AGPGGMMIGRPA+DP GVYVQPPSQAWQSVWQT
Sbjct:   33 YHHLLQQQQQQLQLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQP---AGPGGMMIGRPAMDPNGVYVQPPSQAWQSVWQT 209          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 2.251e-81
Identity = 152/185 (82.16%), Postives = 159/185 (85.95%), Query Frame = 2
Query:   77 FHHLIXXXXXXXXMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE-----AAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPA 616
            +HHL+        MFW+YQRQEIEQ NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E     A G GGMV   ASGVPYYYPPMGQP   A PGGMMIGRPA+DP+GVY QPPSQAWQSVWQ  A
Sbjct:   46 YHHLLQQQQQQLQMFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQP---AVPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSA 227          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.424e-53
Identity = 106/165 (64.24%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  119 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTP 613
            FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE  G  G   ATA+G PY Y P G  T   G  GM++G P   P   Y+  P      +WQ P
Sbjct:   52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGYPYGYLPPG--TAPIGNPGMVMGNPGAYPPNPYMGQP------MWQQP 208          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.506e-50
Identity = 106/169 (62.72%), Postives = 123/169 (72.78%), Query Frame = 2
Query:  119 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAG---LGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPA 616
            FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE  G    G +  A A+G PY Y P G  T   G  GM++G P     G Y   P    Q +WQ  A
Sbjct:   62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAGYPYGYLPAG--TAPIGNPGMVMGNPG----GAYPPNPYMG-QPMWQQQA 223          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 1.473e-48
Identity = 93/136 (68.38%), Postives = 108/136 (79.41%), Query Frame = 2
Query:   80 HHLIXXXXXXXXMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGL-GGMVGATASGVPYYY 484
            HH          MFW+ Q QEIE   DFKNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+R+W+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E  G+  G + +     PYYY
Sbjct:   45 HHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGTIPSVVGSPPYYY 180          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.528e-37
Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 2
Query:  125 SYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE-IKDEAAGLGGMVGATASGVP-YYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAW 592
            +Y  +++E  +DFKN QLPLARIKKIMKAD DV M+SAEAPI+FAKACE+FI++LT+RSWL AEENKR TLQK+DI+ A+  +  +DFL+D+VP+DE I     G   M      GVP YYYPP           G+++G P V  +G+Y   PSQAW
Sbjct:   38 NYWIEQMETVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDESIATADPGFVAMPHPDGGGVPQYYYPP-----------GVVMGTPMVG-SGMYA--PSQAW 181          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.697e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 2
Query:  119 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 523
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.697e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 2
Query:  119 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 523
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 2.697e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 2
Query:  119 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 523
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC_BOVIN (Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.697e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 2
Query:  119 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 523
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
The following BLAST results are available for this feature:
BLAST of DY260336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC1_ARATH1.666e-8486.67Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC4_ARATH2.251e-8182.16Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC3_ARATH4.424e-5364.24Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC9_ARATH3.506e-5062.72Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC2_ARATH1.473e-4868.38Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC6_ARATH1.528e-3754.43Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
NFYC_RAT2.697e-3456.52Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_MOUSE2.697e-3456.52Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN2.697e-3456.52Nuclear transcription factor Y subunit gamma OS=Ho... [more]
NFYC_BOVIN2.697e-3456.52Nuclear transcription factor Y subunit gamma OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260336 ID=DY260336; Name=DY260336; organism=Citrus clementina; type=EST; length=1049bp
CAACCAGCAAGGCCAATCCTCCTCATACCCACCCCAGCCTCCCTCCGCTG
CTGCTGCTGCCACCGCAACGGCGCCGTTTCATCACCTAATCCAACAGCAG
CAGCAGCAGCTCCAAATGTTCTGGTCCTACCAGCGGCAAGAAATCGAACA
AGCGAACGACTTCAAGAACCACCAGCTGCCGCTCGCCCGCATCAAGAAAA
TCATGAAGGCCGACGAGGACGTTCGCATGATCTCCGCCGAGGCCCCGATT
CTGTTCGCCAAGGCCTGCGAGTTGTTCATCCTCGAGCTCACGATCCGCTC
GTGGCTCCACGCCGAGGAGAACAAGCGCAGGACTCTACAGAAGAACGACA
TCGCGGCCGCCATCACCAGGACCGACATCTTCGACTTCTTGGTCGATATT
GTGCCTAGGGATGAGATTAAGGACGAGGCTGCCGGCTTGGGCGGCATGGT
GGGGGCCACTGCCAGTGGGGTTCCGTATTATTATCCTCCAATGGGGCAGC
CCACTGGGACTGCTGGCCCCGGTGGGATGATGATTGGCCGGCCGGCTGTC
GATCCTACTGGTGTTTACGTGCAGCCGCCTAGTCAGGCTTGGCAGTCCGT
TTGGCAGACCCCCGCGGGGACTGGGGACGACGGCTCTTATGGCAGTGGTG
GGAGCGGGGGGACCGGCCATCCTGATGGTCCAGGCTAGGTTAAACAAAAC
CACCAATAATGAGATGTTATGCCGCTGGGTGAATCCATAAAAAAGGCATT
GGAAACCCCTGCCGAGGCTACATGAATTTTGCCTGGCCTCTGAATAATAA
CAACCCTTGTCTCGAATGTTAAAAAAAACCTTCTCTACTGTGATAGACTT
TAACGGAACCCCTTTGGACCTTTTCCTCTTACTTTCTGTCCCACACAACA
CGGACCTCGCCAGAACTCGCCTAATTATACCCAATGTCGCCTCTTTGTGA
CTCTGCAAACAAAAAAAAAAACAAACCCCCTCTTTCTCACTCATCTTTGG
CATTTACAAAAACGCATCCTTATTCACTTTTCCTGCCCACACACTCTAC
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