DY260348

Overview
NameDY260348
Unique NameDY260348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260348_ssr401 microsatellite DY260348_ssr401:401..418. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12696 contig Ccv1_Contig12696:699..1959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260348 vs. ExPASy Swiss-Prot
Match: Y526_CHLPN (Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae GN=CPn_0526 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.914e-16
Identity = 47/124 (37.90%), Postives = 74/124 (59.68%), Query Frame = 2
Query:    5 MKPFKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ--NILIGIVTLHGLVSAGL 370
            M P  E+P C  GD +   L   ++ GCGC+ ++D ++ L+G FTDGDLRR+L + G  +  L++ ++   +PR I  D+    A+Q MES  SPV  LPV++ +    + G++ +H L  AGL
Sbjct:  206 MFPKTEVPFCHLGDKVSFSLEVFSAYGCGCVCIVDPQFRLMGIFTDGDLRRSLASYGGEVLSLSLEKVMTANPRCITEDSDIAIALQLMES-SSPVAVLPVLDNEENRHVTGLLHMHTLAKAGL 328          
BLAST of DY260348 vs. ExPASy Swiss-Prot
Match: Y679_CHLMU (Uncharacterized protein TC_0679 OS=Chlamydia muridarum GN=TC_0679 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.264e-16
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = 2
Query:    5 MKPFKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVIN--RQNILIGIVTLHGLVSAGL 370
            + P  E+P C     + + L  L+S G GC+ V++E++ L+G FTDGDLRR L   G  I +  + ++  R P+ I  D+  +  ++ MES  +PV  LPV++   Q  ++G++ +H L  AGL
Sbjct:  205 LSPRTEVPFCSPSITVSEALTVLSSYGYGCVCVVNEQFELLGIFTDGDLRRGLSECGGAILECPLEQVMTRKPKVISEDSDVLLGLEMMES-GNPVTVLPVVDAQHQRFIVGLLHMHTLARAGL 327          
BLAST of DY260348 vs. ExPASy Swiss-Prot
Match: Y399_CHLTR (Uncharacterized protein CT_399 OS=Chlamydia trachomatis GN=CT_399 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.610e-15
Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 2
Query:   11 PFKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVIN--RQNILIGIVTLHGLVSAGL 370
            P  E+P C     + + L  L+S G GC+ V++E + L+G FTDGDLRR L   G  I    + ++  R+P+ I  D+  + +++ MES  +PV  LPV++  +Q  ++G++ +H L  AGL
Sbjct:  207 PRTEVPFCSPLTTVAESLPTLSSYGYGCVCVVNELFELLGIFTDGDLRRGLSEYGGDILAYPLQQIMTRNPKVISEDSDVLLSLEMMES-GNPVTVLPVVDAQQQRFIVGLLHMHALARAGL 327          
BLAST of DY260348 vs. ExPASy Swiss-Prot
Match: Y1546_AQUAE (Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus GN=aq_1546 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.791e-14
Identity = 44/119 (36.97%), Postives = 75/119 (63.03%), Query Frame = 2
Query:   17 KELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT-VGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 370
            +E+P+ KE   + + ++E+T+KG G   V++EE  L+G  TDGDLRR +   G   F+ T   ++  ++P+TI PD +A++A++KME     +  L V+N +N  IGI+ +H ++ A L
Sbjct:  207 EEVPIVKEDTSMKEAIIEMTAKGFGATAVVNEEGKLVGIITDGDLRRFVNRGGS--FENTRAKDVMTKNPKTIKPDELALKALRKMED--HNITVLIVVNEENEPIGILHMHDILKAEL 321          
BLAST of DY260348 vs. ExPASy Swiss-Prot
Match: Y505_RICPR (Uncharacterized protein RP505 OS=Rickettsia prowazekii GN=RP505 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.045e-11
Identity = 39/123 (31.71%), Postives = 68/123 (55.28%), Query Frame = 2
Query:    2 VMKPFKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 370
            +M+   E+P+  E     + ++ +  K  GC LV D+E +LIG  TDGDLRR +    + I   T   +  ++P  I  +  A EA+  M++    +  +P+++  NI+IGI+ +H L+S G+
Sbjct:  202 IMRSGDEIPLVYEDTSFTETIIIMNKKRLGCTLVTDKEQNLIGIITDGDLRRNIH---DQIHLKTASSIMTKNPHYISSEIFAQEALNLMKA--KNITNIPIVD-DNIIIGIIHIHDLLSMGV 318          
The following BLAST results are available for this feature:
BLAST of DY260348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y526_CHLPN1.914e-1637.90Uncharacterized protein CPn_0526/CP_0226/CPj0526/C... [more]
Y679_CHLMU4.264e-1635.48Uncharacterized protein TC_0679 OS=Chlamydia murid... [more]
Y399_CHLTR3.610e-1536.07Uncharacterized protein CT_399 OS=Chlamydia tracho... [more]
Y1546_AQUAE1.791e-1436.97Uncharacterized phosphosugar isomerase aq_1546 OS=... [more]
Y505_RICPR7.045e-1131.71Uncharacterized protein RP505 OS=Rickettsia prowaz... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YD13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260348 ID=DY260348; Name=DY260348; organism=Citrus clementina; type=EST; length=1261bp
TGTAATGAAGCCGTTTAAGGAGCTTCCTGTTTGCAAGGAGGGAGATTTGA
TAATGGATCAGCTGGTGGAGCTCACAAGTAAAGGATGTGGGTGTTTGCTG
GTTATTGATGAGGAGTATCACCTGATTGGGACGTTTACTGATGGTGATCT
GCGCCGTACTCTCAAGGCCAGTGGAGAAGGCATCTTCAAGCTCACTGTCG
GCGAAATGTGCAACAGGAGCCCGAGAACAATCGGCCCAGATGCAATGGCA
GTGGAAGCCATGCAGAAGATGGAATCACCACCATCTCCCGTGCAATTTTT
GCCAGTGATCAATCGCCAAAATATCCTGATTGGAATAGTCACTTTGCACG
GATTAGTTTCAGCTGGCCTCTGATCTGTGTAGCAGTTTTTTTTTTTGGTG
ATTATTATTATTATTATTTTTGGTGATTTCCTGCTGTGGATAATCAGGTG
TTTTAAGTTCAAAGCATACTGTAATGTTAAATGGGACGAGTGAATCCTGG
AAATTTACCAATGACAAAAACAGAATTATGTCCGAGTTCCTTGCCTTTCA
ACACAAAAAAAGAAAAAAACCCCACTTTTTACGTACAAAGCCTGCTACAA
CATAAAACACCCCCTCTCCCTTTTTTTAGACGCAGCAGGTCCTTAACCCG
CTAACAATAACCTCTCTACTCTCCCATCATATTTCCCCTACCACGACTCA
TTACACAGACACACCTACACTATCACCACACTACTCGACATGTCCCCCAC
CCCCCTAATCACATCCCAACCATCTCCCCCTCCACTCTTCCCAACAACCC
ACACACCACCACCCCCCACACCGACATCACCCACTCACCCAACCCACCAT
ACGACCCCAACTACCCCTCCCCCCACCTCCCATGCCCCTCACCTCCCTCT
CTGCCCCCGATTTCTTGCTCATCTCCCCTGCCCTCACCCCGATTATCATC
TTTTATCACACGCACACCTACTAGCCTCCCATTCACCTGTGCCTTCATCC
ACGTCCTCCCGATTCCCCACCCTCGCCCACCCTCCCACACTTCCTTCATC
CCCTCACTCATCCTCCGCTCCCTCTCGTTGACCCCTCCTCCCTACTCTCC
CGTCCACCCTTTTCTATTAACGCTATCCTCTTCCCTCTTACCCTCCATAC
TCCTGTCATCCCCCCCCCCCCACCTCTTCCCACCCGCTTCTATCCCGTCA
TCAATCTCCATCCTGAATCTTCCATCTTCCAAACTCACCCTCCTCTCTCC
TCTCCTCTTCA
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