DY260350

Overview
NameDY260350
Unique NameDY260350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1319
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1492 contig Ccv1_Contig1492:1..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260350 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.140e-17
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  217 HMDPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDF 516
            H DP+  +FF  KDL  G+TM ++F     +A  + LPR EAD++PFS +++P +L  FS    S  A  M  TL  CE PP +GE K CATSLESM+DF
Sbjct:  205 HDDPNVALFFLEKDLHPGKTMAVHFTAT--TAGEKFLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDF 302          
BLAST of DY260350 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.249e-14
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  223 DPSTMVFFTLKDLKIGETM--PIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDFVHRNFRIGD 543
            DP   +FF  K+L+ G+ +   ++F     +   + LPR +ADSIPFS K+LP +L  F     S  A  M  TL  CE+P  +GE K CATSLES++DFV  +F   D
Sbjct:  357 DPDMALFFLEKNLQQGKKINNALHFANLLATTNSKFLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSFGASD 465          
BLAST of DY260350 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.244e-14
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  229 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLD 513
            +T VFF  + +++G  +P +F    P+A    LPR+ ADS+PF+   LP +L  F  + DS    +ME TL  CE P I GE+K CATSLE++++
Sbjct:  138 TTTVFFHEEAVRVGRRLPFHFPPATPAALG-FLPRQVADSVPFTTAALPGILATFGIASDSTTVPSMEATLRACESPTIAGESKFCATSLEALVE 231          
BLAST of DY260350 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.543e-14
Identity = 57/162 (35.19%), Postives = 76/162 (46.91%), Query Frame = 1
Query:  223 DPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDFVHRNFRIGDQIPSSKHNISHKINY--HFPKLHYFTSA*NPMFAPKMGAMPNHGLTLK-PFFNCH 699
            D    VFF  KDL  G  M ++F +    A    LPR  ADS+PF+ ++LP +L   S    SP A AM  TL  CE  P  GE K CATSLESM++F   +    D      H +S +++     P+  Y   A  P+       +  HG+      F CH
Sbjct:   22 DTVNNVFFLEKDLFPGSKMTLHFTRATAGA--ALLPRGRADSVPFASEKLPEILSQLSVPAGSPAADAMRSTLAECEAAPQAGEAKRCATSLESMVEFAASSLGTRD-----VHAVSTEVDRAGPTPRQAYRVEAVRPVPVSGGDMVACHGMAYAYAVFGCH 176          
BLAST of DY260350 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.613e-13
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  229 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLD 513
            +T VFF  + +++G+ +P  F    P+A    LPR+ ADS+PF+   LP +L  F  + DS    +ME TL  CE P I GE+K CATSLE++++
Sbjct:  165 TTTVFFHEEAVRVGKRLPFRFPPATPAALG-FLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVE 258          
BLAST of DY260350 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.593e-13
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 1
Query:  229 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLD 513
            +T VFF  + +++GE +P YF     SA    LPR  ADSIPF+   LP +L  F  + D+  A  M  TL  CE P + GE+K CATSLE++++
Sbjct:  186 TTTVFFHEEAVRVGERLPFYFPAATTSALG-FLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVE 279          
BLAST of DY260350 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.045e-12
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  217 HMDPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQA-LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDF 516
            H DP+  +FF  KDL  G+ M + F   D      A LPR EA+++PF  ++    L+ FS    S  A+ M+ T+  CE   + GE K CATSLESM+DF
Sbjct:  168 HDDPNAALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDF 268          
BLAST of DY260350 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 8.849e-12
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  223 DPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDFV 519
            DP+  +FF   +L+  +++ ++F      A  + LPR EAD++PFS K L  +L  F     S  A  ++ TL  CE+P  +GE K CATSLESM+DFV
Sbjct:  103 DPTMGLFFLETNLQSSKSIKLHFANM--MAGTKFLPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECELPANKGEKKACATSLESMVDFV 199          
BLAST of DY260350 vs. ExPASy Swiss-Prot
Match: BURP1_ORYSJ (BURP domain-containing protein 1 OS=Oryza sativa subsp. japonica GN=BURP1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.509e-11
Identity = 54/149 (36.24%), Postives = 71/149 (47.65%), Query Frame = 1
Query:  238 VFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGET----KICATSLESMLDFVHRNFRIGDQIPSSKHNISHKINYHFPKLHYFTSA*NPMFAPKMGAMPNHGL 672
            VFF  KDL  G  M ++F +    A    LPR  A+S+PF+ ++LP +L   S    SP A AM  TL  CE   + GET      CATSLESM++FV  +    D    S   IS       P+  Y   A  P+  P    +  HG+
Sbjct:   64 VFFLEKDLFPGSKMTLHFTRATAGA--ALLPRGRAESVPFASERLPEILSQLSIPAVSPTADAMWSTLAECEAARLAGETTKHKHYCATSLESMVEFVASSLGTRDVHAVSTEVISTLT--PTPRQAYRVEAVRPVAVPGGDMVACHGM 208          
The following BLAST results are available for this feature:
BLAST of DY260350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
BURP3_ORYSJ3.140e-1748.00BURP domain-containing protein 3 OS=Oryza sativa s... [more]
BURPH_ORYSJ3.249e-1442.20BURP domain-containing protein 17 OS=Oryza sativa ... [more]
RAF1B_WHEAT4.244e-1442.11Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
BURP6_ORYSJ5.543e-1435.19BURP domain-containing protein 6 OS=Oryza sativa s... [more]
RAF1A_WHEAT1.613e-1342.11Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
BURPD_ORYSJ3.593e-1343.16BURP domain-containing protein 13 OS=Oryza sativa ... [more]
RD22_ARATH1.045e-1241.58Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP5_ORYSJ8.849e-1241.41BURP domain-containing protein 5 OS=Oryza sativa s... [more]
BURP1_ORYSJ1.509e-1136.24BURP domain-containing protein 1 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YD15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260350 ID=DY260350; Name=DY260350; organism=Citrus clementina; type=EST; length=1319bp
GTTACACAATCTCTTCTCTTTCTGCTTCACTTGTTATCTGTGTTTCCTCT
CCCTGAAAAAAAAACATTACTAAAATACATAAGAAACTTCGATAATAGAA
AAGAGATGGGGTTAAGATTTTCAGCTTGGAACCTCCTTCTTTCTCTACTC
TTTCTGTGTGCTCCGGTGCTTTCGGAGAATCTTCATGATTCTCATTCAAT
ACCATCCCACATGAATCACATGGACCCTTCAACGATGGTATTCTTCACCT
TGAAGGATCTAAAGATTGGCGAAACGATGCCGATTTATTTTCGCAAGAGA
GATCCTTCAGCTTATCCTCAGGCTTTGCCTAGAGAAGAAGCAGATTCCAT
TCCATTTTCATTGAAACAACTGCCTTACCTTCTTCAATTCTTCTCGTTCT
CAGATGACTCACCCCTAGCCAAAGCCATGGAAGGGACCCTGAATCATTGC
GAAGTTCCTCCCATCGAAGGAGAAACCAAAATTTGTGCTACCTCTTTGGA
ATCCATGCTTGATTTTGTACACCGGAACTTTCGGATTGGAGACCAAATTC
CAAGTTCTAAACACAACATTTCCCACAAAATCAACTACCATTTTCCCAAA
TTACACTATTTTACAAGTGCCTAAAACCCAATGTTTGCTCCCAAGATGGG
GGCCATGCCCAATCATGGCCTAACCCTTAAGCCATTCTTCAACTGCCACG
CCCAAATGACCTGAAAACAAGTTATTCGGTGTTTCATTTACGTGGGGATA
ACGAAAACACCACTGGACCCCCAATCACTTTCTCCCACCCTGACACCCCC
TTCCCTTGCACTTCCACACACCGCCCCCTTCTCTTCTGCTTCGGAAAAAA
ACCCAGGGCAACCCCCCAATCCGCCATCCCTCCACAAGACCAAATAAATT
AGACAAACTCACACCCACCACCCCCACCACGCTACCCAACAGTACCGGAA
TATCATGCTCGCCAAAAGAACCATCTCTCCCGTCCCCCAAACAACCAACA
TCCCTCACCGCGCCACAACACCAACACTACACCCTCACCACTACAACACC
CTTCCACATACATAACACCTAACAACATCCAATCTCACACATCCCCACGA
NGGCTACCCCACGCCATCCACTCTCACAACTACTCACCTAAATCATAACT
ATTCCACAATTCACCCGTCCACATAGCACCATGCACACTCTCCTAACAAA
CAATATCATGATCTGTATACACTAGACACCACTTCATCTCCAAACTCATT
TGCGTCCTTAGCCTCCTCTTATCCACATCGCATCATTAACAATATACTTT
CACCTCAACCCTCACATCC
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