DY260354

Overview
NameDY260354
Unique NameDY260354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length997
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 7.589e-31
Identity = 81/200 (40.50%), Postives = 109/200 (54.50%), Query Frame = 2
Query:   98 MCGGSILGDFFP---RHGGSRVTASDLWPNSPFAATKQLPHNFESTPFSDEHQSLAK---IKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLPSLSQ-EDLFSRNNSSISSVGFG 676
            MCGG+I+ D+ P   +  G ++TA +LW     +A       + ++     +Q   K   +K+ Q             E   +R+RKN+YRGIR+RPWGKWAAEIRDPRKGVRVWLGTFNTAEEAA AYD  A++IRG KAK+NFP   D+    P               P    +  +SQ E   S+ +  +  +GFG
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVKEEAVKKEQ-----------ATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP---DLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSFPVECIGFG 186          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.912e-31
Identity = 88/225 (39.11%), Postives = 104/225 (46.22%), Query Frame = 2
Query:   98 MCGGSILGDFFPRHGGSRVTASDLWPN----------------------SPFAATKQLPHNFESTPFSDEHQS---LAKIKR---PQPPSYLNSCSASGD-------------EKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLPSLSQEDLFSRNN 649
            MCGG+I+ DF P     RVT+  +WP+                      + F A  Q   +  S    D+       A +K       P    S +A G              EK   R+RKN YRGIRQRPWGKWAAEIRDPR+G R+WLGTF TAEEAARAYD  AR+IRG KAKVNFP E                       P P+P P+L Q    S  N
Sbjct:    1 MCGGAIISDFIPPPRSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADVKPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEEN--MKANSQKRSVKANLQKPVAKPNPNPSPALVQNSNISFEN 223          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.691e-30
Identity = 83/193 (43.01%), Postives = 104/193 (53.89%), Query Frame = 2
Query:   98 MCGGSILGDFFPRHGGSRVTASDLWP---NSPFAATKQ---------LPHNFEST----------PFSDEHQSLAKIK--------RPQPPSYLNSC--------------SASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 544
            MCGG+I+ DF P     RVT   +WP   N   A+ K+         L  +FE+              D+      +K        +P   +++++               SA   EK  KR+RKN YRGIRQRPWGKWAAEIRDPRKG R WLGTF+TAEEAARAYD  AR+IRG KAKVNFP E++   V+
Sbjct:    1 MCGGAIISDFIPPPRSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNVKPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVS 193          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.188e-29
Identity = 73/143 (51.05%), Postives = 88/143 (61.54%), Query Frame = 2
Query:   98 MCGGSILGDFFPRHGGSRVTASDLWPNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEE 526
            MCGG+I+ DF             +W  S            ES P   +  S++  K+ +P S         +E+  KR+RKNLYRGIRQRPWGKWAAEIRDP KGVRVWLGTF TA+EAARAYD  A KIRG+KAK+NFPN +
Sbjct:    1 MCGGAIISDF-------------IWSKS------------ESEP--SQLGSVSSRKKRKPVSV-------SEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNTQ 109          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.164e-29
Identity = 64/92 (69.57%), Postives = 73/92 (79.35%), Query Frame = 2
Query:  254 AKIKRPQPPSYLNSCSASGDE----KKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            A  KR      L++ + +G +    K  KR+RKN +RGIRQRPWGKWAAEIRDPRKGVRVWLGTFN+AEEAARAYD EAR+IRGKKAKVNFP
Sbjct:   85 AAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.793e-25
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  308 GDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 523
            G     K+++ + Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNTAEEAARAYD EA++IRG KAK+NFPNE
Sbjct:   12 GSASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNE 83          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.935e-23
Identity = 53/101 (52.48%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  311 DEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLP 613
            D+ +P+R+    YRG+RQRPWGKWAAEIRDP+K  RVWLGTF TAEEAA AYD+ A K +G KAK+NFP      T T               +P P P P
Sbjct:   30 DQDQPRRRH---YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTISHAPRGVSESMNSPPPRPGP 127          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.695e-22
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  233 SDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            SD    ++++     PS ++  S+S   ++    R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF+TAEEAA AYDK A + RG KAK+NFP
Sbjct:   32 SDVSDFVSELTGQPIPSSIDDQSSSLTLQEKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.213e-22
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:  248 SLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTP 547
            S A++     P   +   A  +E + K++R   YRG+RQRPWGKWAAEIRDP +  RVWLGTF+TAE AARAYD+ A + RG KAK+NFP  EDV  + P
Sbjct:   47 SFARVDSSHNPIEESMSKAFPEEAREKKRR---YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP--EDVRILPP 141          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 8.410e-22
Identity = 52/95 (54.74%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  269 PQP----PSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTV 541
            PQP     +    C +S   ++PK+     YRG+RQRPWGKWAAEIRDP K  RVWLGTF TAE AARAYD  A + RG KAK+NFP      T+
Sbjct:   36 PQPLITGSAVTKECESSMSLERPKK-----YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVGTQTI 125          
The following BLAST results are available for this feature:
BLAST of DY260354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
RAP23_ARATH7.589e-3140.50Ethylene-responsive transcription factor RAP2-3 OS... [more]
RA212_ARATH9.912e-3139.11Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP22_ARATH1.691e-3043.01Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF71_ARATH3.188e-2951.05Ethylene-responsive transcription factor ERF071 OS... [more]
ERF1_ORYSJ4.164e-2969.57Ethylene-responsive transcription factor 1 OS=Oryz... [more]
ERF73_ARATH2.793e-2572.22Ethylene-responsive transcription factor ERF073 OS... [more]
EF113_ARATH9.935e-2352.48Ethylene-responsive transcription factor ERF113 OS... [more]
EF112_ARATH1.695e-2254.74Ethylene-responsive transcription factor ERF112 OS... [more]
EF110_ARATH2.213e-2254.00Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH8.410e-2254.74Ethylene-responsive transcription factor RAP2-6 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260354 ID=DY260354; Name=DY260354; organism=Citrus clementina; type=EST; length=997bp
CGCATCTTCTTTTCTCTTACTAATCGCCAAAACCACAGCCTGACCTGATC
GCTAGTTTAGTTTCAGTGCTTTATTATTACATTTACTTGCGGAAAGAATG
TGTGGCGGTTCTATCTTAGGAGACTTCTTTCCTCGCCACGGCGGCAGCCG
CGTCACCGCTTCCGACCTCTGGCCCAACTCACCCTTCGCTGCTACTAAAC
AACTCCCTCACAACTTTGAATCTACTCCGTTCTCCGATGAACACCAGTCA
CTGGCCAAAATCAAACGCCCTCAACCCCCTTCATATCTAAACTCCTGTTC
AGCTTCAGGTGATGAGAAAAAGCCCAAGAGGCAGAGGAAGAATCTCTACA
GGGGAATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGAC
CCAAGGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGA
AGCAGCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAG
CCAAAGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCT
GCTGCCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCC
CAGTCCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACT
CATCTATAAGTAGTGTTGGGTTTGGCTTGTATGGTTATGATCTGAACCCC
CCGATTGTACTTCTGGTGGTGACGAAAATTTCCGGGACTGGTTCTGGGTC
TGTTTCCAAAGGTGGGTACCAATCCACAGAAACTATGCTGAATTGCAACC
CGAAAGTCCATGAAGGGTCGTTTGCCTCCAATGAAGGGAAAGCCCAAAAA
ACAAAAAAAAAAAAAAAACCAAAACCCTAAAAAAGAAAAAAAACAAAGTG
CCAAAAACCTTCCGAAGGAACTTATGGGCTAACAAAAAATTTCCAGGAAT
TTTCATCCCCCTTTCCCTAATCCCCATGGGGCACACCCCCCCTTTGC
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