DY260355

Overview
NameDY260355
Unique NameDY260355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1287
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260355_ssr780 microsatellite DY260355_ssr780:780..791. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY260355 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.718e-16
Identity = 59/147 (40.14%), Postives = 77/147 (52.38%), Query Frame = 3 
Query:  102 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLQTEDVEXXXXXXXXXXXXXDRDLPYANRACCEHAAK-QVTSPLGFTWL 533
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D E                      A  E   K +VT P G TW+
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVE----VTEAEVELGFKGKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of DY260355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH5.718e-1640.14Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YD21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260355 ID=DY260355; Name=DY260355; organism=Citrus clementina; type=EST; length=1287bp
CTCTCTTTCTCTCTTTTTCTCTCTCCTAGGGTCAGGTTTCTTTCCTTTGT
CTCTAGACTCCAAAACTCTCTCGCTCAATGGCTGATGTCCAGGAGGTTCA
GAATGGAGCTGCGCCGGAGAAGGCTCCTGCTACCGTGGCCAGCTTCACGG
GGATGAAGCCGCAGTTGCTTGTGGAAGCACCGAAGGCTACTGACGCTGTT
CAGTTCTACAAGACCGCGTTTGGTGCCGTGGAGATCGGCCGTAGCGTGGA
AACCAAACGCAAGGCTGAACAGGAGCTCCCACTCATCTCCTGCGCTCAAC
TCGAGATTGCCGGCTCCACTTTCCTTGTCTCTGACGTTTCCGGTGACTCT
GCTGCTGCTCAGACCGTGGGGACCGGATGCGTGCTTTGCTTGCAGACCGA
GGACGTGGAGGCTGGCGTCGCCAAGGCTGTGAGTGCTGGAGCTGCTGCTG
ACCGTGACCTCCCCTACGCGAACCGCGCGTGTTGTGAACACGCCGCGAAA
CAGGTCACGTCCCCCTTAGGCTTCACTTGGCTCATTTTGCCTCACAGCCA
AAAATAGACCGAGTTTGTAAAACATTACACCCAGCGGATTCCAACATTTA
AACACCGGAACACACGTAAGATTCCCCCTCCTTTCCCTTACCCACTTTAA
CGTCTTTATCTTATACTCCCTAACCCACCCTCTCACAGATTATCTCATAT
TGTATGTCACTTCTTGATCTTTAACCTCCCCTGGCCCTCATCTATTCAGC
AAAAATAGGTCAATACTCCTCAACCCATGCACTCACTCACTACTTTTCGT
CCTGACTTACCTCGACTAATTCAAAACCAACACAATAATCGTACCTTCCT
ATGCCCAACTAGCACCAGTGTACCCACCGCTCCCGAGACTTCTCGACCCC
CTTAGTATCCTAACCATCTCAACACGAACTCGTCTCCACCCCTCCTTATT
CAATTCTACTCCAATGTAATTACACGTTGCATATTCTCCTACATCTTCAC
AAATTCCAAATACTTCCTTTCCCCTCTCTTTCTCTCCCCCCACCCTGTAT
CCTCCATCCTTCACCCTCCCCCTACCTTCCTCCCCCCCCCCCCTCTACCT
GGCCACTCTACTAGCTCTCCTCTCTCTTCATACCCTCTTCTACTCCTCTG
GCGCCTACCTCCAGTGATGCGCTCTTCTCTTATCTACATTCCTCATACTA
GAAGTACCCGCTTGTGCTCCTGCTATGTCCGCGATTTACCTCTCCTTGCC
CCATTCTCATCCACATCTGCTCCCCAGGACATTCATC
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