DY260362

Overview
NameDY260362
Unique NameDY260362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1206
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260362 vs. ExPASy Swiss-Prot
Match: C3H24_ARATH (Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana GN=At2g28450 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 7.522e-47
Identity = 103/246 (41.87%), Postives = 141/246 (57.32%), Query Frame = 3 
Query:   12 ETLNLPPPINGQDPTSHNEPL--QNADDEQIQPSIPQSTDDVTTTAAEKRKREDLATEGXXXXXXXXXXXXXXXXXXKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDDTWDPTSERAKKARKL-----EDGDKCEAKXXXXXXXXXXXXXXXXXXXXXXXXELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKN 728
            E   LP     Q P +  EP+  + +  +++  S   +TD++     EKRKR D   +                   KTSLCSYFR+  +C HG+ C+YAHGE ELR++PD+TWDPTSER KKA+ +     E+ ++ E                           LSKCLVHLP KW SD LKKFL + G+LYKSAKK++GM VGFV FE+ EQL++ VE L+G ++ +  LK+A+V+PR+FDKN
Sbjct:    7 EINELPLATKTQTPPASVEPIPMETSSIDELPSSDSNATDNIEAVG-EKRKRAD--EDEKTNLESSDTKITTPSPWWKTSLCSYFRREASCSHGNECKYAHGEAELRMKPDNTWDPTSERGKKAKAMKMSEHEEKEEDEVLFTEQMMESIDGDEGGGGSVSVVDLSLSKCLVHLPNKWQSDELKKFLGEQGVLYKSAKKRRGMIVGFVTFENAEQLQSGVEILDGKTVNSSNLKIADVLPRTFDKN 249
The following BLAST results are available for this feature:
BLAST of DY260362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C3H24_ARATH7.522e-4741.87Zinc finger CCCH domain-containing protein 24 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YE04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260362 ID=DY260362; Name=DY260362; organism=Citrus clementina; type=EST; length=1206bp
CATTTCCAACTGAAACCCTAAACCTCCCGCCTCCAATCAACGGTCAAGAT
CCAACCAGTCACAACGAACCTCTACAAAACGCCGACGACGAACAAATCCA
ACCTTCCATTCCGCAATCGACAGATGACGTCACCACTACCGCGGCCGAGA
AACGCAAAAGAGAGGACCTGGCAACGGAGGGCCCACAATCAGAATCAGCT
GAGCCTTCGCCTTCCCCTTCACTTCACCCTCTACACAAAACCAGTCTCTG
CTCCTACTTCAGGAAGGTCGGCACGTGCTGCCATGGAAGCACCTGCAGGT
ACGCTCACGGCGAAGAGGAGCTCCGAATCAGACCCGATGACACGTGGGAC
CCGACGTCGGAGCGGGCCAAGAAGGCGAGGAAATTGGAGGATGGAGATAA
ATGTGAAGCGAAGGAAGACGCAGTGGAGGAGGTTATGATGACGGAGGCGG
TGGTTGACGGCGACGGCGACGGCGATCAAGATGTTGAGCTTAGTAAATGT
TTGGTGCATTTGCCTAGAAAGTGGCATTCTGATAACTTGAAGAAGTTTCT
CGCAGATCATGGAATTTTATACAAATCTGCAAAGAAAAAGAAAGGCATGA
CTGTGGGTTTTGTGAAGTTTGAAAGTGTAGAGCAATTGAAAAATGCAGTA
GAGGAGCTGGAAGGAATATCTATTGGAAACAAGACTTTAAAGGTTGCTAA
TGTTGTTCCCCGATCTTTTGATAAGAATATCAAATCACCTATGACTCTAT
CCCGAAATGCCAAGCCAACTAGTGAATCTGCTGTGCCTGGAGACTTGCTG
AGGCCCATGCCTCTTCAATGGGACTGAAAATGGTAATGGAACCAATGAAG
GTTTACCCGAGATGGGTCGGGCTTGGAAGGTTAAAGTGGCCCAGAAGTGG
TGGCCCCCCTTGCCCCAAGGTCTAACCCCCGTCCAATGGGAACCCAAAAA
GAAACCCCCCCCCCCAAAGGCCCCAAAAACTTTACAAAAAGGGCGCCGAA
AGCCTTGGGCCCAAGGGGGGGTTTCCCTTCCCCAAAAGGATTAAAAAAAA
ACCAAAAAGAGAAGGGGGGGGCCCTCCCCGGTTAAACCAAAAGGGGGAAA
AAACCTGGGGAACCCCCCCCCTTTTGAAAAGAGGAGAACCCCCTAAAACC
GGGGGGGGGATTTTTTTTCCCTGGGTGGAGAAATTTCCCTCCCCCCCCCC
GGCGCA
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