DY260371

Overview
NameDY260371
Unique NameDY260371
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1225
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260371 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.848e-14
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  267 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGPEENIAEVARTISFHLIP 656
            ESK LW ++  +I     ++ L+ V+  F GH+G+ QLA  S+    +   A GI+LGMASA++T+CGQA+GA+QY  +GI  QR+ ++    A                +G    IA   +  +  +IP
Sbjct:   51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIP 180          
The following BLAST results are available for this feature:
BLAST of DY260371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH3.848e-1433.85Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YE15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260371 ID=DY260371; Name=DY260371; organism=Citrus clementina; type=EST; length=1225bp
TTTTGTTGTCTGATTGATGGAAGGGTTGCAGCACTCACAAAGCTACGTGG
AGTTAGATGAAACCAATGGTTTCAACTACCCCTGCAACTGGGATCCTGCT
GACTGCTGAGCATTGGAAAATGGCAAAATACAAAAGCATTAACATTGAAA
GAAAAGCTTTTTTTCTGGAGGTGAGAATGGTGGGAGAGATCAAAGAGAAG
CTATTAGGAAACACGGAGGAAAATGATGTTGATGGGCAAGTGAAATTCAG
GCAAAAGCTGTGGGTGGAATCCAAAAAGTTATGGATTGTAGCAGCTCCCG
CTATTTTCACAAGATTTTCTTCATTTGGGCTCAACGTAGTTAGTCAGGCA
TTTATTGGGCACATTGGCGCGACCCAACTAGCTGCCTACTCACTTGTGTT
TACTGTTCTCTTGAGGTTTGCAAATGGCATCCTGTTGGGCATGGCTAGTG
CATTAGAGACGCTCTGTGGGCAAGCTTTTGGGGCGAAACAATACCACATG
CTAGGAATATATCTTCAAAGATCATGGATAGTCTTAACCATTTGTGCTAT
CCTTCTCTTACCTCTGTTCTTCTTCACTACCCCAATTTTGGTGGCTTTGG
GCCCAGAAGAAAATATTGCTGAAGTTGCACGAACTATTTCCTTTCACCTA
ATCCCCTGTGTTGTTCCCCTTCCTCATATCCCTTACCCTGCCAAAGTACC
CACACCCCCAGAGCCGAAACCAGGATAACCCCCACCTGGCGGCATGTTCA
TTTTTTGTTCCTTCCACTTCCTTCGTGGCCTTTTACCTGGAATTTCATTT
TTGCACCCCCGGACCCATGGGGCACACCCACTTCTGGGACACTGGAATTC
CCACACGAGGTCACCTACTTGGTTGTTAAAAGAGAAGGGGGGCCCCCCCA
CTTGACGCGGCTTCTCTTTACCTCTCTTTCTTCTACTCTTCGACCAGTCT
AAAAACCCTCCTCCCCCCCACTGACCCCACGACCCACACCCTGCAGCCCC
GGCACCCCCCAACTCCCACGTCTCCCACTCCAGGACACTATCTCACCTAT
CACCGCTCTACCCCCTCCGCTCCCCTCCGACCCCCCAACGATCATCCATA
CCAGTGTCTCACACCCCACCACCCCCCCCCCTCTCCGCCCCACCACCTCT
CTACGCTCCCACCTCCCCGCCCCGTACTCTCCCCCTATCCACTCTCTACT
CCTCTATTCCTCATCCACCCTACCC
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