DY260376

Overview
NameDY260376
Unique NameDY260376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1149
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14913 contig Ccv1_Contig14913:2..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260376 vs. ExPASy Swiss-Prot
Match: ROAA_HUMAN (Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.340e-13
Identity = 51/147 (34.69%), Postives = 71/147 (48.30%), Query Frame = 1
Query:  226 KKIFVGRL-PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SRRSHEICGQQVAIDSATPLD---------DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGNLDFDDWGYGMGSGRPSRGDWKYRPY 633
            KKIFVG L P+  T E +R YF  FG I  + +P DPK    RGF F+TF EE    +V  ++ H + G +  I  A P +             ++N     +   GG GG  +++ + YGN     +GY  G G P  G + Y PY
Sbjct:  153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYG-PGYGGYDYSPY 298          
BLAST of DY260376 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 3.301e-12
Identity = 49/162 (30.25%), Postives = 74/162 (45.68%), Query Frame = 1
Query:  229 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF-AEEVVADRVSRRSHEICGQQVAIDSATPLDD--------AGP---------------SQNFMMNAAETFGGYGGPMRTYGR----------MYGNLDFDDWGYGMGSGRPSRG 612
            KIFVG L  E + E+++ YF +FG I++V +P D +++  +GF F+TF +E+VV D +     +I G++V +  ATP  +         GP                 N   +   ++GGYGG    YG            Y   D+   GYG G G    G
Sbjct:  137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNG 298          
BLAST of DY260376 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.638e-11
Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 1
Query:  223 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGNLDFDDWGYGMGSGRP 603
            G K+F+G LP   T  DLR +F+R+G++ +V +  D ++   RGFGF++F EE   + V+   +  + G+QV I  A P D +G   +        +G  G     +G  +  ++      G   G P
Sbjct:   95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQNGQMGGPP 222          
BLAST of DY260376 vs. ExPASy Swiss-Prot
Match: HNDLB_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis GN=hnrpdl-B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.226e-11
Identity = 49/137 (35.77%), Postives = 65/137 (47.45%), Query Frame = 1
Query:  226 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGNLDFDDWGYGMGSGRPSRGDWKYRPY 633
            KK+FVG L  E T E +++YF  FG I ++ +P D K    RGF FVT+  EE V   +  R H+I   +  I +A P +     Q       +  GG GG  R  GR  G  ++ D  YG      S GD  Y  Y
Sbjct:  119 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKEVYRQQQQ-----KQQKGGRGG-TRGRGRGQGYSNYYDQNYGGYGNNDSYGDQGYGGY 249          
The following BLAST results are available for this feature:
BLAST of DY260376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ROAA_HUMAN1.340e-1334.69Heterogeneous nuclear ribonucleoprotein A/B OS=Hom... [more]
SQD_DROME3.301e-1230.25RNA-binding protein squid OS=Drosophila melanogast... [more]
RB27C_DROME1.638e-1129.69Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
HNDLB_XENLA6.226e-1135.77Heterogeneous nuclear ribonucleoprotein D-like-B O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YE21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260376 ID=DY260376; Name=DY260376; organism=Citrus clementina; type=EST; length=1149bp
TTAATGGTTGATACTCATGAATTAGGAGGCTCCACAGTAGTTGTTGATCG
GGCAACACCCAAGGAAGATGACTTCAGGCCAGTAGGCAGAATGTCACATG
GTGGATATGGTGCATACAATGCTTACATTTCTGCAGCAACTAGATATGCT
GCACTGGGTGCTCCTACCTTATATGACCATCCAGGTTCATTTTATGGAAG
AGGGGAGTCCAGTCAAAGAATAGGTAAAAAGATTTTTGTTGGCAGGCTAC
CTCAGGAGGCCACAGCTGAAGATTTGCGCCGGTATTTTAGTAGATTTGGC
CGCATATTAGATGTTTATGTCCCAAAGGACCCTAAGAGAACTGGCCACAG
AGGTTTTGGTTTTGTCACCTTTGCGGAAGAAGTTGTAGCAGATCGTGTTT
CTCGAAGGTCTCACGAAATTTGTGGACAGCAGGTTGCAATAGATTCAGCC
ACACCACTTGATGATGCTGGCCCCAGTCAAAATTTCATGATGAATGCTGC
TGAAACCTTTGGGGGTTATGGTGGTCCTATGCGCACCTACGGCAGGATGT
ATGGAAATCTTGATTTTGATGATTGGGGTTATGGAATGGGCAGTGGAAGA
CCATCGAGAGGGGACTGGAAGTACCGGCCATACTAAGAAGTTGCTGCCAA
GTTTCACCCCTAGATCTTTTCTATATGTTAACAATATGCAGAGGCCTTTG
GACCCCCAACCAAAACTAAGAACGAATATTTTTTTGATTTTTTTCCCCGG
TAAAAAAAAAATTGTGGATAAAATCGCAGTACCCACCTCAAAAAAATTCA
TATCTTCTAACAAAATTGCCCGAATACCTTCCTTTAAAAATTCCCCCTCC
CCCCACCCTAGTTTGGGCCTTCTTCAAACCAACTACACTTACCACACCAT
CCCAAGATCCAAAACAACCCCCCCCTTCCTTCTGCCAAACGTTGCCCATT
AAAAAAACCCTTTGCCCTTACATTCCCTCACAACTATAGGTTTCCCTTCC
ATACATAACAAAATCTCCCATTATTGCTACTCCCCCACTCACCTCCCCCC
CCAGCCTCTCTTACCATCTCCCTCTCCTCTCTTATTCCATGTTCCCTGGT
CCATCCCCTTACCTCCCCTCTCCTTCCTTTCACCAATCACCACTTCCTA
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