DY260433

Overview
NameDY260433
Unique NameDY260433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260433_ssr1180 microsatellite DY260433_ssr1180:1180..1189. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1527 contig Ccv1_Contig1527:1..1283. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.218e-42
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            KSG+ CPS A LVKP RTQM  +   GMKI CQATSIPADRVPDM KR+ +NLLLLGA+SLPT  MLVPY +F  PPG GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLK
Sbjct:   18 KSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLK 134          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 5.119e-41
Identity = 79/119 (66.39%), Postives = 95/119 (79.83%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            +S +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLK
Sbjct:   16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLK 134          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.394e-38
Identity = 77/117 (65.81%), Postives = 87/117 (74.36%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            K+G + PSRA L K AR     K  +  K+ CQATSIPADRVPDMGKRQ MNLLLLGA+SLPT  ML+PY  FF PP  G  GGG  AKDA+GNDI+AA WL THGPGDRTL +GL+
Sbjct:   19 KNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLR 135          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 6.918e-38
Identity = 78/119 (65.55%), Postives = 93/119 (78.15%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPM--GMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            K+GMF PS A L K  R  ++       GMK+ CQATSIPAD VPDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLK
Sbjct:   18 KNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLK 135          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.443e-35
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            KSG+   S+  L+KP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPYATFFAPPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLK
Sbjct:   16 KSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLK 134          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 5.482e-35
Identity = 77/122 (63.11%), Postives = 91/122 (74.59%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            KSG+   S+  LVKP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPY TFF PPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLK
Sbjct:   16 KSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLK 134          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.034e-33
Identity = 77/122 (63.11%), Postives = 88/122 (72.13%), Query Frame = 3
Query:   57 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            KSG+   S+A LVKP +   +  + MG    MK KC A SIPAD RVPDM KR LMNLLLLGA++LPTG MLVPYATFFAPPG G    GT AKDA GND++  +WL TH PG RTLT+GLK
Sbjct:   18 KSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLK 136          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.546e-32
Identity = 73/116 (62.93%), Postives = 84/116 (72.41%), Query Frame = 3
Query:   72 CPSRAFLVKPARTQMVTKNPM---GMKIKCQA-TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            C SRA L KP +     +  +      I CQA +SIPADRVPDMGKRQLMNLLLLGA+SLPT  MLVPY  FF P G G+AGGG  AKD +GND++A +WL THGP DRTLT+GLK
Sbjct:   16 CRSRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLK 131          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.870e-29
Identity = 66/113 (58.41%), Postives = 76/113 (67.26%), Query Frame = 3
Query:   72 CPSRAF-LVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            C +RA  L KP +     +  +   I C A SI ADRVPDM KR+LMNLLLLGA+SLPT  MLVPY +F  P G GS  GG  AKD +GNDI+  DWL THGP DRTL +GLK
Sbjct:   16 CRTRASSLCKPVKGLGFGRERIPRNITCMAGSISADRVPDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLK 128          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.893e-19
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   99 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            P + Q   ++ +   ++  A S     VPDM KR +MNL+LLG  SLP G + + Y  FF PP  G   GG  AKDA+GNDI A  WL TH  GDR+L++GLK
Sbjct:   12 PCKAQATRRSRVMSVVRAAAVS---SEVPDMNKRNIMNLILLGGASLPVGSLALGYGAFFVPPSSGGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLK 111          
The following BLAST results are available for this feature:
BLAST of DY260433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
UCRIA_PEA1.218e-4270.09Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ARATH5.119e-4166.39Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG1.394e-3865.81Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SPIOL6.918e-3865.55Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC1.443e-3563.93Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_TOBAC5.482e-3563.11Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_SOLTU1.034e-3363.11Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ2.546e-3262.93Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT5.870e-2958.41Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_VOLCA1.893e-1946.60Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260433 ID=DY260433; Name=DY260433; organism=Citrus clementina; type=EST; length=1283bp
CAATGGCTTCCTCCTCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGC
TCAAGCAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACC
AGCAAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGT
GCCAGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGG
CAGCTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATT
TATGTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTG
CTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCC
GCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGG
ATTGAAGGTACAAATCAATTTCTTTGAAAATTATTGCTTAGTTCATTGCA
AACTTGACTCTTGGTTCTAAAAAACTTAATAAATTGTCATGAGATAATCT
GCAATTGCCATGAACCTCAATTTTTGGTTGTGTTTACACGTGAAGCAGGA
TTTCTCACATTTGCCACTTATTCTGTAGCCCCAATTGTGAACTCCTTCCC
CTGAATGCTGGAGTTTTCTCGTACGTGAAAGGTCGCTCTACAAGTAGATT
CATAAGGAGATCCCACCCTACCTTGTTGTGGAAAAAGACAAAACACCTTG
CATCCAAGGGAATCCATGCCGTCCGCCCTCCCCCTTGAAGTGGGGTGCCC
TGGGAATTCACCTGAGAACAAATTCCCCCGGCCCCGGCCCCGAATCCCCA
TAACAATACCCAGGAAAAATTGGTGAAAAGGCCCGCCCCCTTGTCCTTGG
CACTTGGGCCCCAGCCCACCATTGAAAAAGGGAAAGGGACTCCTCCCTTC
CCCGGAACCGAAAAACAAATTTCCAAACGGGGGAAACCCCCCGGGGGGGC
CTAAAAAACCTTGTTCCCGGGCCCCCGCCCTTCCAAAAATCCAAATTTTT
TGGCCCCGGCGCGGTTTTCCTCTTCCGCCACCCCCCCAAAAACCAACCTG
GAAACGCAAAACCCGCCTATTCACAAAAAAAAGCTCATACAACAAAGAAA
AAACATCCCCTCGGGCCTGAACCCCACCCCCCCTCCCTGGGAACCCCGCG
GGCCAACCTTCGAAAACCATTTTTTCCCCCTCTCTCTCTCCCCTCCCTTT
CTCCTTGTTACTCCCCACCACAAACACCCCTTCACACCCCCCCCACCCCA
CCAAAGGGCGTCGGCAGGCTGCCCCCCCCCCGC
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