DY260436

Overview
NameDY260436
Unique NameDY260436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1294
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260436_ssr755 microsatellite DY260436_ssr755:755..766. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14932 contig Ccv1_Contig14932:2..1295. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.279e-23
Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = 3
Query:  180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLLGNPPKSNPLRDPLDRVVETT 611
            + +L G++  WL   L+AFN GD+ +++ L   H   +  Q A+  N +KL +KI+IL L+E+ F  PS+ R+I  S IA+ TKL + ++EHLLMKSLS++LI+G I+     +H++WV PR+L      N +    +R+ E T
Sbjct:  227 LKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRIL----DLNQINSMNNRIAEWT 366          
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 7.018e-22
Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 3
Query:  180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLL 551
            + SL  T  +WL   L AFNSGD+ R+Q L     +A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA+  K+++  VE L+MK+LSV L+ G I+ V+  VH++WV PR+L
Sbjct:  222 LESLRNTDRQWLIDTLYAFNSGDVDRFQTL----KSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVL 341          
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.166e-22
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 3
Query:  180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLL 551
            + SL  T  +WL   L AFNSG++ R+Q L      A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA+  K+++ +VE L+MK+LSV L++G I+ V+  VH++WV PR+L
Sbjct:  222 LESLRNTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVL 341          
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.564e-21
Identity = 55/124 (44.35%), Postives = 79/124 (63.71%), Query Frame = 3
Query:  180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLL 551
            + SL  T  +WL   L AFNSG++ R+Q L      A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA   K+++ +VE L+MK+LSV L++G I+ V+  VH++WV PR+L
Sbjct:  222 LESLRDTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVL 341          
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.941e-21
Identity = 54/124 (43.55%), Postives = 80/124 (64.52%), Query Frame = 3
Query:  180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLL 551
            + SL  T  +WL   L AFNSG++  +Q L     +A   QP L  NE  LL+KI +LCLME+ F+RP+  R +    IA+  K+++ +VE L+MK+LSV L++G I+ V+  VH++WV PR+L
Sbjct:  222 LESLRSTDRQWLIDTLYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVL 341          
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.013e-20
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLL 551
            + SL  T  +WL   L AFNSG + R+Q L      A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA+  K+++  VE L+MK+LSV L+ G I+ V+  VH++WV PR+L
Sbjct:  222 LESLRDTDRQWLIDTLYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVL 341          
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.560e-13
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 3
Query:  189 LTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLLGN 557
            L GT+ EWL+ ++ A N GDL  ++ L       +   P L  +   L +KI ++ L+E++F  P   RT+    IA  T++   +VE L+M++LSV LI G+I+ V   V +S V  R+L +
Sbjct:  230 LVGTQHEWLHDLVIAMNVGDLPLFERLM----GQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRILNH 348          
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.467e-11
Identity = 41/133 (30.83%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  207 EWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLLGNPPKSNPLRDPLDRVVE 605
            +WL+ +L A   GD  ++  L +V  + +   P L ++E  L +KI ++ L+E +F +    R +    I++ T L  ++VEHL+M+++S+ L++G I+ V   V +SWV PR++      + +    DR+VE
Sbjct:  249 DWLFQLLNALTVGDFDKFDSLIKVQISKI---PILAQHESFLRQKICLMTLIETVFVK--NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRII----SGDQITKMKDRLVE 372          
The following BLAST results are available for this feature:
BLAST of DY260436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSD13_DICDI1.279e-2339.5826S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_RAT7.018e-2245.1626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_HUMAN9.166e-2244.3526S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_BOVIN1.564e-2144.3526S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_CHICK5.941e-2143.5526S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_MOUSE1.013e-2044.3526S proteasome non-ATPase regulatory subunit 13 OS... [more]
RPN9_SCHPO4.560e-1334.96Probable 26S proteasome regulatory subunit rpn9 OS... [more]
RPN9_YEAST1.467e-1130.8326S proteasome regulatory subunit RPN9 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YH19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260436 ID=DY260436; Name=DY260436; organism=Citrus clementina; type=EST; length=1294bp
GCTTTTATGATTGTCTAGAGACAACATTGCCAAAATTTGTTAACGCAGCT
GCACAAGAAAAAGAGAATTGTTATCACGGAATTACTTTACATTTCTGATA
ATCATTTTGTGGTGCTTTGGGGTGATTTCCATAATCTTTATTGTTGTGCT
TGAGATGACGCTTTCAACTGTTTTTACAGATAAATAGTCTTACAGGAACA
AAGGTCGAGTGGCTTTACTATATTCTCCAGGCATTCAACTCTGGTGACTT
AGTTCGCTATCAAGAATTATGCCGTGTACACAATGCTGCTCTGAGAGCTC
AACCAGCACTAGTTGAGAACGAGAAGAAGCTATTGGAAAAGATTAACATT
CTCTGCCTGATGGAAATCATCTTTAGCCGGCCTTCTGAGGACCGAACTAT
TCCATTAAGCATCATTGCAGAGCGCACAAAACTTTCTATTGAGGATGTTG
AGCATCTTCTCATGAAGTCTCTCTCTGTTCACCTCATAGAGGGTATAATT
GAATCAGTTGAGGGCACGGTACATGTGTCCTGGGTGCCACCCCGACTTTT
GGGGAATCCCCCCAAATCCAATCCCTTGCGTGATCCGCTGGACCGAGTGG
TCGAGACAACGAACACTCCCGCCCTACTACCCACCGAAACCACAAACACC
ACAGCCATGCAGACAAAGACACTAAATTTAAGCATATCTCCCCCCCCCCA
CCCTCCCCCCTCCCCCCCCCCCGGACCACCACACCACCCTCCTCCCCCCC
GCCAACCCACCCACCCAACCAACACCCACCCCACATCAACCTCAATACCT
CAACCATCCCAAACACCACACCAACCCCACCCACTACCCGCCGCGCTCTC
TCCACCCCATCACGCCCCACAACACCCACTTACCATATGATGACACCCTA
CCGCGCAACCCCAACTCCCACATACACAAGACGAGAAAAGACGATCGCAG
GATGCGCATGTATACCGCATATACACGATTCATTACGCAACTCGAAGCAA
ACGTATCCCTCCATCCGAAAAATCAACACCGTAACTAACGCTCCTCACAC
ACCACAAAACTCACCAATATCAACATACACGACACACAACACAGAATCTC
TCAATAACGCGCTATATCCCACAAACATAAACCAAATCACACAAATACAC
CTCCAAACAAACAACACCACCCCCCAACATTCGGTCCAAACACACCGCAT
CCACCCCCACCCACATTCCCTCAAACCAAAAGCCCACCACACCACAATTC
TATGTACATCACCAAATAATACTACACCCCAGACACCGCAACAC
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