DY260436
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.279e-23 Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = 3 Query: 180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLLGNPPKSNPLRDPLDRVVETT 611 + +L G++ WL L+AFN GD+ +++ L H + Q A+ N +KL +KI+IL L+E+ F PS+ R+I S IA+ TKL + ++EHLLMKSLS++LI+G I+ +H++WV PR+L N + +R+ E T Sbjct: 227 LKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRIL----DLNQINSMNNRIAEWT 366
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 7.018e-22 Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 3 Query: 180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLL 551 + SL T +WL L AFNSGD+ R+Q L +A QP L NE +LL KI +LCLME+ F+RP+ R + IA+ K+++ VE L+MK+LSV L+ G I+ V+ VH++WV PR+L Sbjct: 222 LESLRNTDRQWLIDTLYAFNSGDVDRFQTL----KSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVL 341
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 9.166e-22 Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 3 Query: 180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLL 551 + SL T +WL L AFNSG++ R+Q L A QP L NE +LL KI +LCLME+ F+RP+ R + IA+ K+++ +VE L+MK+LSV L++G I+ V+ VH++WV PR+L Sbjct: 222 LESLRNTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVL 341
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.564e-21 Identity = 55/124 (44.35%), Postives = 79/124 (63.71%), Query Frame = 3 Query: 180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLL 551 + SL T +WL L AFNSG++ R+Q L A QP L NE +LL KI +LCLME+ F+RP+ R + IA K+++ +VE L+MK+LSV L++G I+ V+ VH++WV PR+L Sbjct: 222 LESLRDTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVL 341
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 5.941e-21 Identity = 54/124 (43.55%), Postives = 80/124 (64.52%), Query Frame = 3 Query: 180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLL 551 + SL T +WL L AFNSG++ +Q L +A QP L NE LL+KI +LCLME+ F+RP+ R + IA+ K+++ +VE L+MK+LSV L++G I+ V+ VH++WV PR+L Sbjct: 222 LESLRSTDRQWLIDTLYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVL 341
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.013e-20 Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 3 Query: 180 INSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLL 551 + SL T +WL L AFNSG + R+Q L A QP L NE +LL KI +LCLME+ F+RP+ R + IA+ K+++ VE L+MK+LSV L+ G I+ V+ VH++WV PR+L Sbjct: 222 LESLRDTDRQWLIDTLYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVL 341
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 4.560e-13 Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 3 Query: 189 LTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLLGN 557 L GT+ EWL+ ++ A N GDL ++ L + P L + L +KI ++ L+E++F P RT+ IA T++ +VE L+M++LSV LI G+I+ V V +S V R+L + Sbjct: 230 LVGTQHEWLHDLVIAMNVGDLPLFERLM----GQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRILNH 348
BLAST of DY260436 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.467e-11 Identity = 41/133 (30.83%), Postives = 76/133 (57.14%), Query Frame = 3 Query: 207 EWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIESVEGTVHVSWVPPRLLGNPPKSNPLRDPLDRVVE 605 +WL+ +L A GD ++ L +V + + P L ++E L +KI ++ L+E +F + R + I++ T L ++VEHL+M+++S+ L++G I+ V V +SWV PR++ + + DR+VE Sbjct: 249 DWLFQLLNALTVGDFDKFDSLIKVQISKI---PILAQHESFLRQKICLMTLIETVFVK--NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRII----SGDQITKMKDRLVE 372 The following BLAST results are available for this feature:
BLAST of DY260436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260436 ID=DY260436; Name=DY260436; organism=Citrus clementina; type=EST; length=1294bpback to top |