DY260441

Overview
NameDY260441
Unique NameDY260441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1052
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 6.563e-89
Identity = 169/223 (75.78%), Postives = 177/223 (79.37%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIELPK 739
            MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG                           T +GIKCKDGIV+GVEKLI SKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIV RAKSEATNYESVYGE +PVKELA RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYM+EPSGISYRYFG AIGKG+ AAKTEI K +        +G IE+ K
Sbjct:    1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG---------------------------TAVGIKCKDGIVLGVEKLIQSKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTC-REGIIEVAK 195          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 325.094 bits (832), Expect = 4.254e-88
Identity = 168/223 (75.34%), Postives = 178/223 (79.82%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIELPK 739
            MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG                           TV+GIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRH+GMAVAGLAADGRQIV RAKSEA +YESVYG+ +PVKEL++RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFG AIGKG+ AAKTEI K          +G IE+ K
Sbjct:    1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG---------------------------TVVGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTC-KEGVIEVAK 195          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 9.807e-85
Identity = 157/207 (75.85%), Postives = 168/207 (81.16%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE 691
            MSSIGTGYDLSVTTFSPDGRVFQ+EYA KAVDNSG                           TV+GIKCKDGIV+GVEKL+ SKMML GSNRRIHSVH HSG+AVAGLAADGRQIV+RAKSEA +YE VYGEPI VKELA RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSG+SY+YFG A+GKGR AAKTEI K +
Sbjct:    1 MSSIGTGYDLSVTTFSPDGRVFQVEYATKAVDNSG---------------------------TVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLK 180          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.335e-57
Identity = 115/205 (56.10%), Postives = 145/205 (70.73%), Query Frame = 2
Query:   77 SIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE 691
            SIGTGYDLS TTFSPDGRVFQ+EYAAKAVDNSG                           T +G++ KDG+V+ VEKL+ SKM++P +NRRIH+V RH G+A++GL ADGRQ+V+R ++EAT+Y   YG  I  K L +R++++V L +LY  +RPFG  VILG  D++GPQLYMIEPSGIS+ YFG AIGKG  AAKTEI K +
Sbjct:    1 SIGTGYDLSSTTFSPDGRVFQVEYAAKAVDNSG---------------------------TALGLRVKDGVVLAVEKLLVSKMLVPNTNRRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQLYSLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLK 178          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 5.072e-57
Identity = 105/207 (50.72%), Postives = 145/207 (70.05%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE 691
            MSS+G+GYDL V+T+SPDG++FQ++YA KAV+NSG                           T++ IK KDG+V+GVEKL+ SKM+  GSNRR+H +  H G+A+AG  AD RQ++TRA+SEA NY+S YG+PIP+K L+QR+ASY H+ TLY  +RPFGC + + G D+ GPQL+++EPSG    YFG ++GKG+ AAK E+ K +
Sbjct:    1 MSSVGSGYDLYVSTYSPDGKLFQVDYANKAVENSG---------------------------TLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIK 180          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 9.566e-56
Identity = 116/208 (55.77%), Postives = 138/208 (66.35%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE 691
            MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS                            T IGI+CKDG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK R AAKTEI K +
Sbjct:    1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSS---------------------------TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 181          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 9.566e-56
Identity = 116/208 (55.77%), Postives = 138/208 (66.35%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE 691
            MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS                            T IGI+CKDG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK R AAKTEI K +
Sbjct:    1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSS---------------------------TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 181          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 9.566e-56
Identity = 116/208 (55.77%), Postives = 138/208 (66.35%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE 691
            MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS                            T IGI+CKDG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK R AAKTEI K +
Sbjct:    1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSS---------------------------TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 181          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 9.566e-56
Identity = 116/208 (55.77%), Postives = 138/208 (66.35%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE 691
            MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS                            T IGI+CKDG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK R AAKTEI K +
Sbjct:    1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSS---------------------------TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 181          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.531e-45
Identity = 100/208 (48.08%), Postives = 128/208 (61.54%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE 691
            MS+IGTGYDLS + FSPDGRVFQI+YA+KAV+ SG                           TVIGI+ KD +V+ VEK+I SK+  P +  RI ++ ++ GMAVAGL ADG  +   A+ EA NY   + + IP+K L  RVA YVH  TLY  +RPFG  +IL  +D  +GPQLY IEPSG S+ YF  A GK +  AKTE+ K +
Sbjct:    1 MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSG---------------------------TVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEKLK 181          
The following BLAST results are available for this feature:
BLAST of DY260441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA3_SPIOL6.563e-8975.78Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA3_ARATH4.254e-8875.34Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]
PSA3_ORYSJ9.807e-8575.85Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA3_ACACA1.335e-5756.10Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA3_DICDI5.072e-5750.72Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSA3_RAT9.566e-5655.77Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_MOUSE9.566e-5655.77Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_HUMAN9.566e-5655.77Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_BOVIN9.566e-5655.77Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA3_DROME1.531e-4548.08Proteasome subunit alpha type-3 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260441 ID=DY260441; Name=DY260441; organism=Citrus clementina; type=EST; length=1052bp
CGCTTTCTCAGTAGAAGGGAAAGGGAAATCAAATTGACTCAAAAATCGAA
AAAGAAAGAAGAGAGCAAGCATGAGCAGCATAGGCACAGGCTACGATCTG
TCGGTGACCACATTCTCTCCCGACGGTCGCGTTTTCCAGATCGAATACGC
CGCCAAAGCCGTCGACAACAGCGGGTAGGTTAACTCACTCTCTCTTTCGC
TCTTTTTTTTATTCTCCATTCTTAATATCCTTATTTTTTCAATCTTCGCT
CGCAGGACTGTGATTGGAATTAAATGCAAAGATGGCATCGTTATGGGAGT
GGAGAAGCTAATAGCGTCGAAGATGATGTTGCCTGGTTCCAATAGAAGAA
TCCATTCCGTTCATCGTCACTCCGGCATGGCTGTTGCAGGATTAGCAGCA
GATGGGAGACAAATTGTTACCAGGGCCAAGTCTGAAGCTACAAACTATGA
AAGTGTATATGGCGAACCAATTCCTGTTAAAGAACTTGCTCAACGAGTTG
CTAGCTATGTGCATCTATGTACTCTATATTGGTGGCTCAGACCTTTTGGA
TGTGGTGTAATTCTTGGAGGTTATGACAGAGATGGACCGCAATTGTATAT
GATTGAACCTTCTGGTATCTCCTATAGGTATTTTGGAACTGCAATTGGAA
AGGGCAGGCCAGCCGCTAAAACCGAGATTGGAAAATTTGAAGCTTTTCGA
AATGACCTGCCCAACAAGGGGTTCATTGAATTACCCAAGAACCATTTAAG
GAGGTGCCCGAATGAGGCCTAAGGCAAGGGCCTTTGAACTTGGAAATGGA
CCGGGGTCCGTGAAGAATCCAAACCCCCCCCCACCCAAAGGGTACAAAAA
GAACCTTTTTGAAGGGAAAACAAAGGCCAGCCCCCCCCAAACCCCCCTTT
GGAAAAAAAGGGTGGCAAATTATTGGACCCAAAATTCAAAAAATTTTGTT
TTCTACTTTTGCTGCCCCCTTTCAAGGCCCTTCCCCGCAAACAATCTTTC
CCACCAATTTTTCAAAAAAATATAAACAAACAAGGGGGGAACCTCTCCCC
TC
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