DY260446

Overview
NameDY260446
Unique NameDY260446
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1343
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260446_ssr869 microsatellite DY260446_ssr869:869..878. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260446_ssr154 microsatellite DY260446_ssr154:154..165. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1532 contig Ccv1_Contig1532:1..1343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260446 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.124e-15
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:  314 RQRLAATNPTVWRVDSYDASRGKWFISTGGVEGNPGAQTLKNWFNFERLG 463
            R RL +T+ TVWR+D+YD S GKW+++T GV+G PG  TL +WF  E+ G
Sbjct:  112 RDRLCSTS-TVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG 160

HSP 2 Score: 40.817 bits (94), Expect = 2.124e-15
Identity = 21/79 (26.58%), Postives = 40/79 (50.63%), Query Frame = 1 
Query:   79 PLVDVNGNKVEAS*DYYLVSAIXXXXXXXXXXXXXXNELCPLDVVQLSSDSERGTRLRFATYDN-TSMINEEVDLNVRF 312
            P++D +G++++    YY++S+I               + CP  VVQ  SD + GT + F+  D+   ++    D+N+ F
Sbjct:   30 PVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF 108
The following BLAST results are available for this feature:
BLAST of DY260446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASP_THECC2.124e-1554.0021 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YI05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260446 ID=DY260446; Name=DY260446; organism=Citrus clementina; type=EST; length=1343bp
TGAATACTCCTTTCTTTGACTGCAGTCTCCTTTCTTCTCCTTGCCTTTGC
CACAAAACCGCTTGTGGGACTCGCTGATCCTTTGGTTGATGTCAATGGCA
ACAAGGTGGAAGCATCCTGAGACTACTATTTGGTCTCAGCAATTCGAGGA
GCAGGCGGCGGCGGCCTCACCCTCTTCAGGGGCAGAAACGAACTCTGCCC
ACTTGATGTTGTCCAACTAAGTTCCGACTCAGAAAGAGGAACCCGTTTAA
GATTCGCAACGTATGATAACACTAGTATGATCAATGAAGAAGTGGATCTG
AACGTGAGATTCTCGACAGAGACTCGCTGCAACGAACCCAACAGTATGGA
GAGTCGACAGCTATGATGCATCGAGAGGAAAATGGTTTATATCCACTGGT
GGTGTTGAAGGAAACCCTGGAGCTCAAACTTTGAAAAACTGGTTCAACTT
TGAGAGACTTGGAAGAGATCCGACCTACGTACCAGATTGTTCACTGCCCC
TTCCCTTTCGCAATCCCTGTGTATCTTTCTCGCATCATGTCGCGGCTTCT
CCACCACCCCGCCCCCACGTCTGCCCCTCAATACCAACCAAGCCGTTCCA
CTCCCCTCCAACGACTACATCATACCCCCCTCCCCCTCCTATACCGCCAC
CTCAACAACACCACCCACCCGTGGACTGGAACTAGTCCACCCAACCCACC
TCCTCTCCCACCTAACAACATTACACAAACCACCCCCACCATCGAGCCAC
TCCTCCGTCTATCGCCAACCTTCCAATCCCTCCCCTCCCCCCCTACCCAC
AAACCCACTCTCTCCCCTAACTGCTAATCTATAAATATACACCCACACCA
CCTCTACCTCTACACCANACACACACACTCCTCTACCACATCCCTCTTCC
CACCCACACCCCCATACTTCCACAGCCATACCCCTACAATTATGACACAC
TCAACCCTCCCCCAATACCTACACACCTACAAACCACTCAAATCATCTCT
ACCACCTTCTCCACAATTACCCAAATCCCACCTCCTCTACTCGACACTCA
CCATCACTCCCACCATACACACCTACCCCCCACCCCCCCCCACACTCACC
CTCACTTCCAACCCCCTACACCCCCCACCTGCACCTTACCCCATCTTTCC
TCTACCCATAACCGCACACTTATCCATTTCCCACGTCATGACACCCTTTA
GCATTTATCTGCATAACTCCCCAATCAATTCACTCACTGCCATGCAGCCT
CCTCCCTCACAACCCCCATCCGCCTCTCTATCCCTATCTACACCCATTCG
CCCCACTGTTATATTTTCCCTCCACTCTCAACTCACACTCGTC
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