DY260449

Overview
NameDY260449
Unique NameDY260449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1288
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1534 contig Ccv1_Contig1534:1..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260449 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.998e-22
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 KSYSVDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 236
            KSYS DD+H+S+KYN+W ST +GNK+LDAAYR    K    PV+LLFSVN SG F GVAEM   VD++     W QDK
Sbjct:  416 KSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDK 490          

HSP 2 Score: 30.8018 bits (68), Expect = 2.998e-22
Identity = 16/46 (34.78%), Postives = 23/46 (50.00%), Query Frame = 2
Query:  227 TGQVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQ 364
            T +V  E   Q+LKI  S+     I DDF  YE R+   +  K ++
Sbjct:  529 TQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 574          
BLAST of DY260449 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.998e-22
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 KSYSVDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 236
            KSYS DD+H+S+KYN+W ST +GNK+LDAAYR    K    PV+LLFSVN SG F GVAEM   VD++     W QDK
Sbjct:  416 KSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDK 490          

HSP 2 Score: 30.8018 bits (68), Expect = 2.998e-22
Identity = 16/46 (34.78%), Postives = 23/46 (50.00%), Query Frame = 2
Query:  227 TGQVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQ 364
            T +V  E   Q+LKI  S+     I DDF  YE R+   +  K ++
Sbjct:  529 TQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 574          
BLAST of DY260449 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.998e-22
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 KSYSVDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 236
            KSYS DD+H+S+KYN+W ST +GNK+LDAAYR    K    PV+LLFSVN SG F GVAEM   VD++     W QDK
Sbjct:  417 KSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDK 491          

HSP 2 Score: 30.8018 bits (68), Expect = 2.998e-22
Identity = 16/46 (34.78%), Postives = 23/46 (50.00%), Query Frame = 2
Query:  227 TGQVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQ 364
            T +V  E   Q+LKI  S+     I DDF  YE R+   +  K ++
Sbjct:  530 TQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 575          
BLAST of DY260449 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.606e-22
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 KSYSVDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 236
            KSYS DD+H+S+KY++W ST +GNK+LD A+R    K    PV+LLFSVN SG F GVAEM  PVD+  +   W QDK
Sbjct:  395 KSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDK 469          

HSP 2 Score: 30.8018 bits (68), Expect = 6.606e-22
Identity = 16/52 (30.77%), Postives = 25/52 (48.08%), Query Frame = 2
Query:  227 TGQVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQHQLQRQ 382
            T +V  E   Q+LKI  S+     I DDF  YE R+   +  + ++    +Q
Sbjct:  508 TQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEEVVRKERQNRNKQ 559          
BLAST of DY260449 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.118e-21
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 3
Query:    3 KSYSVDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 236
            KSYS DD+H+S+KY++W ST +GNK+LD+A+R    K    PV+LLFSVN SG F GVAEM  PVD+  +   W QDK
Sbjct:  395 KSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDK 469          

HSP 2 Score: 31.187 bits (69), Expect = 1.118e-21
Identity = 16/52 (30.77%), Postives = 25/52 (48.08%), Query Frame = 2
Query:  227 TGQVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQHQLQRQ 382
            T +V  E   Q+LKI  S+     I DDF  YE R+   +  + ++    +Q
Sbjct:  508 TQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQSRNKQ 559          
BLAST of DY260449 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.549e-20
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 KSYSVDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 236
            KSYS DD+H+S+KY++W ST +GNK+LDAAYR    K    P++LLFSVN SG F GVAEM   VD++     W QDK
Sbjct:  422 KSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDK 496          

HSP 2 Score: 28.8758 bits (63), Expect = 1.549e-20
Identity = 17/51 (33.33%), Postives = 25/51 (49.02%), Query Frame = 2
Query:  227 TGQVNFEIGIQILKIFKSHSSKRCILDDFGFYEAR---ERIMQQKKAKQHQ 370
            T +V  E   Q+LKI  +      I DDF  YE R   E  M++++ +  Q
Sbjct:  535 TQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ 585          
BLAST of DY260449 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.549e-20
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 KSYSVDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 236
            KSYS DD+H+S+KY++W ST +GNK+LDAAYR    K    P++LLFSVN SG F GVAEM   VD++     W QDK
Sbjct:  422 KSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDK 496          

HSP 2 Score: 28.8758 bits (63), Expect = 1.549e-20
Identity = 17/51 (33.33%), Postives = 25/51 (49.02%), Query Frame = 2
Query:  227 TGQVNFEIGIQILKIFKSHSSKRCILDDFGFYEAR---ERIMQQKKAKQHQ 370
            T +V  E   Q+LKI  +      I DDF  YE R   E  M++++ +  Q
Sbjct:  535 TQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ 585          
BLAST of DY260449 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.549e-20
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 KSYSVDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 236
            KSYS DD+H+S+KY++W ST +GNK+LDAAYR    K    P++LLFSVN SG F GVAEM   VD++     W QDK
Sbjct:  422 KSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDK 496          

HSP 2 Score: 28.8758 bits (63), Expect = 1.549e-20
Identity = 17/51 (33.33%), Postives = 25/51 (49.02%), Query Frame = 2
Query:  227 TGQVNFEIGIQILKIFKSHSSKRCILDDFGFYEAR---ERIMQQKKAKQHQ 370
            T +V  E   Q+LKI  +      I DDF  YE R   E  M++++ +  Q
Sbjct:  535 TQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ 585          
The following BLAST results are available for this feature:
BLAST of DY260449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YTHD2_MACFA2.998e-2258.97YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN2.998e-2258.97YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN2.998e-2258.97YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD1_MOUSE6.606e-2256.41YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD1_HUMAN1.118e-2156.41YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YTHD3_PONAB1.549e-2056.41YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE1.549e-2056.41YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN1.549e-2056.41YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YI08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260449 ID=DY260449; Name=DY260449; organism=Citrus clementina; type=EST; length=1288bp
TAAAATCCTACAGTGTGGATGATGTTCATAAAAGTGTTAAATATAATATG
TGGACCAGCACGCCTAATGGCAATAAGAAGCTTGATGCAGCATATCGTGA
AGCCAAGGAGAAGTCCAGTGACTGTCCTGTATTTCTGTTATTTTCTGTCA
ATGCCAGTGGGCAATTTGTTGGTGTAGCAGAGATGGTTGGCCCTGTTGAC
TTTGACAAAACTGTGGAATACTGGCAACAGGACAAGTTAATTTTGAGATA
GGCATTCAGATTCTAAAAATTTTTAAGAGCCATTCAAGCAAGAGATGCAT
CCTAGATGATTTTGGGTTTTATGAGGCTCGTGAGAGGATAATGCAGCAAA
AGAAGGCGAAGCAACACCAGTTACAGAGACAGGTATCGGATGGGAAGCCT
AGTGACGTTATAATTGATGATAAAGACAAAGACGCGGCTTCAGCAAAAGA
TAGAGTGCAAAAATCGCAAGAAGAAACTTTGGTAAAGGAACTAGCACTGA
TTGAGACAATTGGAGATGTGAAGAAGTTGGAGGAGAATGGATCAGCTGCA
ACGGTAGAAGATGCTGTAAAAGGTGCCAAATCAGCTGTATCGTCTGGGAA
GAAGGGTACTTCTAATGGGGTTGGAAGCGCATGCTAATTTTTTGGGTTCT
GTTGCCTTCTATTTTTTATTTCCCCTCTTTCTTTGATTTAAAATAAAATT
GAAGTTTGGTTAGTTTAAGGAAACTAAGGTCTCCTCTCACCAGTTTTCCC
AATTCCCCAAGGCGTGTACCGGGACCGGGACCTGATCCCCCTTCCTTACC
TAAAAATGCTCCGAGAAAAAGACCCCTGCCCTCAACCCAACACAAGCCGC
CTCCACACTCCCCTCACCCCCCGCCACCACGCACCCTTCAACCCGCTCTC
ATAACCTCCCCTCAGATCCTTCTTTATTATCCCCAACTCACACCAACCCC
CATCTCCCTTTTCCGTCATCACAACTACCTATCTAACAACTCCCTACATC
CATCCTCTTTCCCACCCTCTGTCCTTTCCCCCCCCTCCCTCATTCACGCC
TCACTGTCCTACCGCCAAACAACACCCAGTCCTAGAGTGTTCTGCCCCAC
CCTTAACACAACCCATCTCCCTCCACGCCACCATTCTGCCACGTTGTACG
CGACATCTGCACCTCAATACCTACCGTAATCCCCCCGACCTTACACTAAC
GCAAACCCTAACAGCGGACTTGCACCCTCCCTCACCACTGTATTATCACC
TGTCTCNCGCTTACTATCCCCTCTTACCCTCCTCCACC
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