DY260451

Overview
NameDY260451
Unique NameDY260451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1302
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260451_ssr13 microsatellite DY260451_ssr13:13..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1536 contig Ccv1_Contig1536:1..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 3.589e-66
Identity = 129/163 (79.14%), Postives = 132/163 (80.98%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNFSAYGCCL 578
            MLVYQDLLTGDELLSDSFPYKEI NGILWEVEGKWVVQGAVDVDIGANPS               KVVDIV TFRLQEQPAFDKK FVTYMKRFIKLLTPKL EE+QE FKKNIEGATKFLLS LSDLQFFVGESMHDDG LVFAYY+  AT P F  +   L
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYAL 163          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.081e-62
Identity = 124/162 (76.54%), Postives = 132/162 (81.48%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF--SAYG 569
            MLVYQDLLTGDELLSDSFPYKEI NG+LWEVEGKWV+QGAV+VDIGANPS               KVVDIV TFRLQEQPAFDKK FVT+MKR+IK LTPKL  E+QE+FKK+IEGATKFLLS LSDLQFFVGESMHDDG LVFAYYK  AT P F   AYG
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYG 162          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.843e-60
Identity = 117/156 (75.00%), Postives = 125/156 (80.13%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQDLLTGDELLSDSFPY+EIENGILWEV+GKWVVQGA+DVDIGANPS               KVVDIV TFRLQEQP FDKK FVT+MKR+IK L+ KL  E+QE FKKNIEGATK+LL  L DLQFFVGESMHDDG LVFAYYK  AT P F
Sbjct:    1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTF 156          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.118e-59
Identity = 115/156 (73.72%), Postives = 124/156 (79.49%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQDLLTGDELLSDSFPYKE+ENG+LWEV+GKWVVQGAVDV+IGANPS               +VVDIV TFRLQEQPAFDKK FVT+MKR+IK LTPKL  E QE FKKNIE ATKFLL  + DLQFFVGESMHDDG LVFAYYK  +  P F
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPF 156          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 3.254e-59
Identity = 113/156 (72.44%), Postives = 123/156 (78.85%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQDLLTGDELLSDSFPYKE+ENG++WEVEGKWVVQGAVDVDIGANPS               KVVDIV TFRLQEQP  DKK F+ Y+K+FIKLLTPKL  E+QE FKKNIEGATKFLL  L D +FFVGESMHDD  +VFAYY+  AT P F
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTF 156          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 4.249e-59
Identity = 114/156 (73.08%), Postives = 123/156 (78.85%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWV  GAVDV+IGANPS               KVVDIV TFRLQEQP +DKK F+ Y+K++IKLLTPKLSEE Q +FKK IEGATKFLL  LSD QFFVGE MHDD  LVFAYYK  +T+P F
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTF 156          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 9.467e-59
Identity = 115/156 (73.72%), Postives = 122/156 (78.21%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQDLLTGDELLSDSFPYKEI+NG+LWEV+GKWVVQGAVDV+IGANPS               KVVDIV TFRLQEQPAFDKK FVTY+KR+IK LTPKL  E QE FKKNIE ATKFLLS L D QFFVGE MHDD  LVFAYYK  +  P F
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTF 156          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.236e-58
Identity = 117/163 (71.78%), Postives = 126/163 (77.30%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNFSAYGCCL 578
            MLVYQDLLTGDELLSDSF YKEIENG+LWEVEGKWVV+GAVDVDIGANPS               KVVDIV TFRLQEQPAFDKK FVT+MKRFIK LTPKL  E+QE+FKK+IEGATK+LLS + D QFFVGESM DD  LVFAYYK  A  P F  +   L
Sbjct:    1 MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYAL 163          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 8.014e-58
Identity = 118/158 (74.68%), Postives = 126/158 (79.75%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXX--KVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQDLL+GDELLSDSFPYKEI+NG+LWEV+GKWVVQGAVDVDIGANPS                 KVVDIV TFRLQEQP FDKK FVT++KR+IKLLTPKL  E+QE FKKNIEGATKFLLS LSDLQFFVGESM DD  LVFA YK  AT P F
Sbjct:    1 MLVYQDLLSGDELLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPSAEGADADADEGVDDQTVKVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIF 158          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 3.045e-57
Identity = 114/163 (69.94%), Postives = 126/163 (77.30%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNFSAYGCCL 578
            MLVYQDLLTGDELLSDS+PYKEIENG+LWEVEGKWVV+GAVDV+IGANPS               KVVDIV  FRLQEQP FDKK F+ ++K++IKLLTPKL  E+QE FKKNIEGATK+LL  L DLQFFVGESMHDDG LVFAYYK  A  P F  +   L
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVVKGAVDVNIGANPSAEGGEDEGVDDTAV-KVVDIVDVFRLQEQPPFDKKQFLGFVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFAL 162          
The following BLAST results are available for this feature:
BLAST of DY260451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
TCTP_HEVBR3.589e-6679.14Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV1.081e-6276.54Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ3.843e-6075.00Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC1.118e-5973.72Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA3.254e-5972.44Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH4.249e-5973.08Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU9.467e-5973.72Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.236e-5871.78Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN8.014e-5874.68Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA3.045e-5769.94Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YI10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260451 ID=DY260451; Name=DY260451; organism=Citrus clementina; type=EST; length=1302bp
CTCACCGCTGCGTCTCTCTCTCTCTCTCTCTCTCCAGTTTTCTCCGTTGA
TTATTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAATCATGTTGGTCTA
TCAAGATCTCCTCACCGGTGATGAGCTTCTCTCCGATTCTTTTCCCTACA
AGGAAATTGAGAATGGGATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTA
CAAGGAGCCGTTGATGTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGC
TGATGAGGATGAGGGTGTTGATGACCAAGCCGTGAAGGTGGTTGACATTG
TCCACACATTCAGGCTACAGGAGCAACCCGCTTTTGACAAGAAGCCGTTT
GTAACATACATGAAGAGATTCATCAAGTTGCTGACGCCCAAGCTGAGTGA
GGAGAGGCAGGAGATATTTAAGAAGAATATTGAGGGAGCGACCAAGTTCT
TGCTCTCGAACCTCAGTGACCTTCAATTCTTTGTTGGGGAGAGCATGCAT
GATGATGGCCGGCTTGTCTTTGCTTACTACAAGGCACGTGCGACCCACCC
CAACTTTTCTGCATACGGCTGCTGCCTTGCAGGAAGCCCACCTGCTACCC
CGGCCTTCCACAAAAACGCACCCGCACCACTTACCCATCTCAACAACCCC
CCCCCCCAATCCTTACACCACCCTAAGACCACAGCCCCCCCACAACCCGC
AATCCAAGCCTACTAATTATTATCCTTCACAACACCTAAAACGCCATTTA
ACGCGCCAAATCACTCCACTCTCTATTCCCGACATAACAAAACAATAACA
CCACACCGAATACATCTACATACTCCACCACCCACACCCATCTTCACAAT
TCACACCCTTCCCCCCTCTCATCAACCCTCACCTCCCACAACCTCACCCC
CACCCCACCGCCCTCTACCCCCTCACGACCAATCCCCCACCCTCTTCTCC
CGAGGCCTCCCATTGTTATGCTAGTCGTTGGACCGTGCTCCCCCTAGCCC
ATCCGCCAGGTTTCGACCTCGCGTTCCTCTTCCCCAGCCCTCATCTCCAC
TACACATACCCCATACCCCTCCCTATTTTTACCTTCTACCTCCTCGCCAC
CCAACCCCAGAACTACCACTATCCTCCCCACACCTACCACTCCTCACTCC
ACCCTCCAATCCCCACATCTACACGTCTATCCCTCCCTCTACACCTCCAC
ATCCCATATCCATCACATTGTCTGTCATCCCTGCTCAGACAGTGAACCTC
ATCTCAAACAGAATCACACATGCCTGCCCTCTCAGCTTCACAGCAATCCA
AT
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