DY260454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.288e-23 Identity = 55/163 (33.74%), Postives = 86/163 (52.76%), Query Frame = 2 Query: 29 IDSPSLDLD---IVSTIRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFL-RNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKI---------SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERIS 478 I P+ DL + R VW EN E + +++ + +S+D EFPG + ++ R + Y LK NVD LIQ+G+TLSD G + + +EFNF DFD+ +D HA DSI+LL+ G+DF++ +DG+ F ++ + E +S Sbjct: 3 IIKPNRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVS 165 HSP 2 Score: 37.3502 bits (85), Expect = 1.288e-23 Identity = 15/27 (55.56%), Postives = 17/27 (62.96%), Query Frame = 1 Query: 469 ENLKWVTFHGLYDVPYLVKIFTHHPLP 549 E + WVTFH YD YL+KI T LP Sbjct: 162 EEVSWVTFHSAYDFGYLMKILTRRELP 188
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.048e-22 Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 2 Query: 104 MPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGI 415 M +++ L + ++ID EFP LR T ++A E Y D+ F+VD LIQLG+TL D G+I T+E NFSDF + D SI+ L+ +GLD KI ++GI Sbjct: 1 MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRIGGTWEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGI 103 HSP 2 Score: 44.669 bits (104), Expect = 3.048e-22 Identity = 21/49 (42.86%), Postives = 27/49 (55.10%), Query Frame = 1 Query: 460 KHRENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFD 606 K R N+ WVTFHG YD+ YL+K FT LP ++ S S +D Sbjct: 118 KTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYD 166
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.949e-22 Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 2 Query: 77 VWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGK-ISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGI 415 VW N + M + + L + ++ID EFPG L+ TP +A Y D+KFNVD THLIQLG+TL GK I+ T+E N SDF+ K L SI LK++GLD DKI ++GI Sbjct: 5 VWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLIQLGLTLF---GKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGI 115 HSP 2 Score: 35.8094 bits (81), Expect = 3.949e-22 Identity = 18/41 (43.90%), Postives = 24/41 (58.54%), Query Frame = 1 Query: 427 FLLQDSWRFCPKHRENLKWVTFHGLYDVPYLVKIFTHHPLP 549 F ++ S KH + ++WVTF G YD YL+K T PLP Sbjct: 120 FFMEFSQILNEKHGK-MRWVTFQGSYDKAYLLKGLTRKPLP 159
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 8.659e-22 Identity = 53/156 (33.97%), Postives = 89/156 (57.05%), Query Frame = 2 Query: 38 PSLDLDIVST----IRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYN--DLKFNVDCTHLIQLGITLSDNEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERIS 478 P+L +D +S+ IR VW N + M + +L+ + V+S+D EFPG + + + Y+ L+ NVD +IQ+G+ LSD EG + T++FNF+ F+L+ D++A +SI+LL SG+DF K + GI F ++G + E ++ Sbjct: 8 PALGVDGISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVT 162 HSP 2 Score: 41.2022 bits (95), Expect = 8.659e-22 Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 1 Query: 466 RENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFD 606 +E + W+TFH YD YL+K T PLP + + ++F ++D Sbjct: 158 QEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYD 204
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 4.207e-21 Identity = 54/113 (47.79%), Postives = 69/113 (61.06%), Query Frame = 2 Query: 77 VWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGI 415 VW N E+ M + + L F ++ID EFPG L+ TP +A Y D+KFNVD THLIQLG TL D G I+ T+E N SDF+ K SI LK +GL+ DKI ++GI Sbjct: 4 VWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGI 115 HSP 2 Score: 27.335 bits (59), Expect = 4.207e-21 Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 1 Query: 475 LKWVTFHGLYDVPYLVKIFT-HHPLP 549 + WV F G YD YLVK T PLP Sbjct: 135 ITWVNFQGSYDNAYLVKGLTGGKPLP 160
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 3.446e-20 Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 2 Query: 77 VWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGI 415 VW N E+ M + + L ++ID EFPG L+ TP +A Y D+KFNVD THLIQLG TL D G + T+E N SDFD K SI LK +GL+ DKI ++GI Sbjct: 9 VWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGI 120 HSP 2 Score: 27.335 bits (59), Expect = 3.446e-20 Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 1 Query: 475 LKWVTFHGLYDVPYLVKIFT-HHPLP 549 + WV F G YD YLVK T PLP Sbjct: 140 ITWVNFQGSYDNAYLVKGLTGGKPLP 165
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 4.497e-20 Identity = 51/152 (33.55%), Postives = 79/152 (51.97%), Query Frame = 2 Query: 68 IRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPG--------FLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYT--------FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERI 475 IR VW +N E M + +++ F +++D EFPG F NT + Y LK NV+ +IQLG+T SD +G + ++FNF +FDL+ D++A DSI+LL+ SG+DF K + GI F ++ + E + Sbjct: 12 IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYH------YETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENV 157 HSP 2 Score: 37.3502 bits (85), Expect = 4.497e-20 Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 1 Query: 469 ENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFD 606 EN+ WVTFH YD YL+K+ T LP + ++F +D Sbjct: 155 ENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYD 200
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.831e-19 Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 2 Query: 68 IRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRN--APAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYT-------FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERI 475 IR VW +N + M + ++++ F +++D EFPG + + A Y LK NV+ +IQLG+T S+ +G + ++FNF +FDL D+ A DSI+LLK SG+D K DGI F ++ + E + Sbjct: 12 IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENV 156 HSP 2 Score: 37.3502 bits (85), Expect = 2.831e-19 Identity = 17/46 (36.96%), Postives = 25/46 (54.35%), Query Frame = 1 Query: 469 ENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFD 606 EN+ WVTFH YD YL+K+ T LP + ++F + +D Sbjct: 154 ENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYFPTVYD 199
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.172e-18 Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 2 Query: 47 DLDIVSTIRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTP----RNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKIS---------YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERIS 478 DL V IR VW N E + ++ + +S+D EFPG + R YN LK NVD LIQ+G+TLSD +G + Y +EFNF DFD+++D HA DSI+LL+ G+DF++ ++G+ F ++ + E +S Sbjct: 7 DLSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVS 163
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-17 Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2 Query: 68 IRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNT--------PRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKI-------SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERI 475 IR VW N E M ++ ++ F +++D EFPG + T P + +Y+ LK NV+ LIQLG+TLSD +G + ++FNF +F++ D+ A DSI+LL+ S +D +K + G+ F ++G V ++I Sbjct: 16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKI 166 HSP 2 Score: 31.187 bits (69), Expect = 1.118e-17 Identity = 15/46 (32.61%), Postives = 21/46 (45.65%), Query Frame = 1 Query: 469 ENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFD 606 + + WVTFH YD YL+K+ + LP FF +D Sbjct: 164 DKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFFPVVYD 209 The following BLAST results are available for this feature:
BLAST of DY260454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260454 ID=DY260454; Name=DY260454; organism=Citrus clementina; type=EST; length=1236bpback to top |