DY260454

Overview
NameDY260454
Unique NameDY260454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1236
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260454_ssr909 microsatellite DY260454_ssr909:909..920. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1538 contig Ccv1_Contig1538:1..1236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.288e-23
Identity = 55/163 (33.74%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   29 IDSPSLDLD---IVSTIRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFL-RNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKI---------SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERIS 478
            I  P+ DL    +    R VW EN E     +  +++ +  +S+D EFPG + ++  R     + Y  LK NVD   LIQ+G+TLSD  G +          + +EFNF DFD+ +D HA DSI+LL+  G+DF++  +DG+    F   ++   +   E +S
Sbjct:    3 IIKPNRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVS 165          

HSP 2 Score: 37.3502 bits (85), Expect = 1.288e-23
Identity = 15/27 (55.56%), Postives = 17/27 (62.96%), Query Frame = 1
Query:  469 ENLKWVTFHGLYDVPYLVKIFTHHPLP 549
            E + WVTFH  YD  YL+KI T   LP
Sbjct:  162 EEVSWVTFHSAYDFGYLMKILTRRELP 188          
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.048e-22
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 2
Query:  104 MPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGI 415
            M  +++ L  +  ++ID EFP  LR T ++A   E Y D+ F+VD   LIQLG+TL D  G+I  T+E NFSDF +  D     SI+ L+ +GLD  KI ++GI
Sbjct:    1 MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRIGGTWEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGI 103          

HSP 2 Score: 44.669 bits (104), Expect = 3.048e-22
Identity = 21/49 (42.86%), Postives = 27/49 (55.10%), Query Frame = 1
Query:  460 KHRENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFD 606
            K R N+ WVTFHG YD+ YL+K FT   LP  ++  S        S +D
Sbjct:  118 KTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYD 166          
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.949e-22
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 2
Query:   77 VWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGK-ISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGI 415
            VW  N +  M  + + L   + ++ID EFPG L+ TP +A     Y D+KFNVD THLIQLG+TL    GK I+ T+E N SDF+  K L    SI  LK++GLD DKI ++GI
Sbjct:    5 VWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLIQLGLTLF---GKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGI 115          

HSP 2 Score: 35.8094 bits (81), Expect = 3.949e-22
Identity = 18/41 (43.90%), Postives = 24/41 (58.54%), Query Frame = 1
Query:  427 FLLQDSWRFCPKHRENLKWVTFHGLYDVPYLVKIFTHHPLP 549
            F ++ S     KH + ++WVTF G YD  YL+K  T  PLP
Sbjct:  120 FFMEFSQILNEKHGK-MRWVTFQGSYDKAYLLKGLTRKPLP 159          
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.659e-22
Identity = 53/156 (33.97%), Postives = 89/156 (57.05%), Query Frame = 2
Query:   38 PSLDLDIVST----IRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYN--DLKFNVDCTHLIQLGITLSDNEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERIS 478
            P+L +D +S+    IR VW  N +  M  + +L+  + V+S+D EFPG +        + + Y+   L+ NVD   +IQ+G+ LSD EG     + T++FNF+ F+L+ D++A +SI+LL  SG+DF K  + GI    F   ++G  +   E ++
Sbjct:    8 PALGVDGISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVT 162          

HSP 2 Score: 41.2022 bits (95), Expect = 8.659e-22
Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 1
Query:  466 RENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFD 606
            +E + W+TFH  YD  YL+K  T  PLP   +    +  ++F  ++D
Sbjct:  158 QEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYD 204          
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.207e-21
Identity = 54/113 (47.79%), Postives = 69/113 (61.06%), Query Frame = 2
Query:   77 VWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGI 415
            VW  N E+ M  + + L  F  ++ID EFPG L+ TP +A     Y D+KFNVD THLIQLG TL D  G I+ T+E N SDF+  K      SI  LK +GL+ DKI ++GI
Sbjct:    4 VWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGI 115          

HSP 2 Score: 27.335 bits (59), Expect = 4.207e-21
Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  475 LKWVTFHGLYDVPYLVKIFT-HHPLP 549
            + WV F G YD  YLVK  T   PLP
Sbjct:  135 ITWVNFQGSYDNAYLVKGLTGGKPLP 160          
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.446e-20
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 2
Query:   77 VWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGI 415
            VW  N E+ M  + + L     ++ID EFPG L+ TP +A     Y D+KFNVD THLIQLG TL D  G  + T+E N SDFD  K      SI  LK +GL+ DKI ++GI
Sbjct:    9 VWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGI 120          

HSP 2 Score: 27.335 bits (59), Expect = 3.446e-20
Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  475 LKWVTFHGLYDVPYLVKIFT-HHPLP 549
            + WV F G YD  YLVK  T   PLP
Sbjct:  140 ITWVNFQGSYDNAYLVKGLTGGKPLP 165          
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 4.497e-20
Identity = 51/152 (33.55%), Postives = 79/152 (51.97%), Query Frame = 2
Query:   68 IRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPG--------FLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYT--------FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERI 475
            IR VW +N E  M  +  +++ F  +++D EFPG        F  NT  +      Y  LK NV+   +IQLG+T SD +G +           ++FNF +FDL+ D++A DSI+LL+ SG+DF K  + GI    F   ++   +   E +
Sbjct:   12 IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYH------YETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENV 157          

HSP 2 Score: 37.3502 bits (85), Expect = 4.497e-20
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 1
Query:  469 ENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFD 606
            EN+ WVTFH  YD  YL+K+ T   LP        +  ++F   +D
Sbjct:  155 ENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYD 200          
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.831e-19
Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 2
Query:   68 IRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRN--APAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYT-------FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERI 475
            IR VW +N +  M  + ++++ F  +++D EFPG +        + A   Y  LK NV+   +IQLG+T S+ +G +          ++FNF +FDL  D+ A DSI+LLK SG+D  K   DGI    F   ++   +   E +
Sbjct:   12 IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENV 156          

HSP 2 Score: 37.3502 bits (85), Expect = 2.831e-19
Identity = 17/46 (36.96%), Postives = 25/46 (54.35%), Query Frame = 1
Query:  469 ENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFD 606
            EN+ WVTFH  YD  YL+K+ T   LP        +  ++F + +D
Sbjct:  154 ENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYFPTVYD 199          
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.172e-18
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 2
Query:   47 DLDIVSTIRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTP----RNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKIS---------YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERIS 478
            DL  V  IR VW  N E     +  ++  +  +S+D EFPG +        R       YN LK NVD   LIQ+G+TLSD +G +          Y +EFNF DFD+++D HA DSI+LL+  G+DF++  ++G+    F   ++   +   E +S
Sbjct:    7 DLSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVS 163          
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-17
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2
Query:   68 IRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNT--------PRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKI-------SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGIPQVCFCSKILGGSVPNTERI 475
            IR VW  N E  M  ++  ++ F  +++D EFPG +  T        P +     +Y+ LK NV+   LIQLG+TLSD +G +          ++FNF +F++  D+ A DSI+LL+ S +D +K  + G+    F   ++G  V   ++I
Sbjct:   16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKI 166          

HSP 2 Score: 31.187 bits (69), Expect = 1.118e-17
Identity = 15/46 (32.61%), Postives = 21/46 (45.65%), Query Frame = 1
Query:  469 ENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFD 606
            + + WVTFH  YD  YL+K+ +   LP            FF   +D
Sbjct:  164 DKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFFPVVYD 209          
The following BLAST results are available for this feature:
BLAST of DY260454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CAF1I_ARATH1.288e-2333.74Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1H_ARATH3.048e-2243.27Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1E_ARATH3.949e-2247.37Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]
CAF1_SCHPO8.659e-2233.97Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CAF1D_ARATH4.207e-2147.79Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]
CAF1C_ARATH3.446e-2046.90Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1G_ARATH4.497e-2033.55Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1F_ARATH2.831e-1933.10Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1K_ARATH1.172e-1835.03Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1B_ARATH1.118e-1732.45Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YI14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260454 ID=DY260454; Name=DY260454; organism=Citrus clementina; type=EST; length=1236bp
CTAAGCTACGCCCCCTTTTTAGATACCAATAGACTCCCCTTCTTTAGACT
TGGACATAGTGAGCACCATTCGTACTGTTTGGTGTGAAAATTACGAACTC
CTGATGCCCTTTCTTGACAATCTTTTAAATTGTTTCGACGTGCTATCCAT
CGACGCCGAGTTCCCGGGCTTCCTCCGCAACACCCCCAGAAACGCCCCGG
CCGTTGAGTCTTACAATGATCTCAAGTTCAACGTTGACTGCACCCACCTC
ATTCAACTTGGCATTACTCTCTCCGACAACGAGGGCAAGATCAGCTATAC
TTTTGAATTCAATTTCTCTGACTTTGATCTCAAGAAAGACCTTCACGCTG
GTGATTCTATTCAGCTTTTGAAGGATAGCGGCTTGGATTTTGACAAGATT
CCGAAGGATGGGATTCCCCAGGTGTGTTTTTGCTCCAAGATTCTTGGAGG
TTCTGTCCCAAACACAGAGAGAATCTCAAGTGGGTCACTTTCCATGGTTT
GTATGATGTACCTTACTTGGTTAAAATCTTTACCCACCACCCCTTGCCCC
CCCACACCCAAGCCCTTTCCGGGGTTGCTCCTCTGTTTTTCCAGAGTGAC
TTTGATCCAAACTTCGCACCCAATACCGCCAACGACTAACAGCCTCGCAC
TCGCCACTACAACACTTGCTTCTCCTTTTGAAAGTTCGACTTACACCCTA
CTCCCGCCACCCCCTCCCCCACCCCCTACCACCCCACCACCATCCATACC
ACCCATCCCCCACCCACACCCCTCAACGACCACTCACTTTCAAACCCCTC
TAACCACCCAATATTCCATTAACCACCCAACCCACCAATATCTCCCACAC
ACGCCCAACGCACCCACTCGCCTACCTACCTTCCCTCACCCCCCCCTTTT
CCTCTCCATCCCTCCCTCCCACCCTACAACCCCCCACAACACCCGCACCC
GACCATAATCTACTCCCTACTCACCCCCACCCTGATCACCACCACCCCCC
TCCACCAACCAGCCACAACCCCACCCCCCCTACCACATACTCCAAGCACT
CCCTCATCCACACCCCATCCACAATATCTACCCAGACCACCAATAACCAA
CACCACCAATCAACCAACACCACCCCCGAATCATACCTTCTCACCCCATC
TCCGAGGCCTCTTACCCCACTCCTGCCCACCCGCCTCCCACACTGTGCTA
TCCTTCCCACCTCCTGCCCCGCCTCATCTCCCGGCC
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