DY260462
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 1.041e-83 Identity = 141/173 (81.50%), Postives = 146/173 (84.39%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MREIISIHIGQAGIQVGNSCWELYCLEHGI PDGMMPSD T+GVAHDAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173 HSP 2 Score: 43.5134 bits (101), Expect = 1.041e-83 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AVLLDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 6.687e-83 Identity = 139/173 (80.35%), Postives = 145/173 (83.82%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MREIISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173 HSP 2 Score: 43.5134 bits (101), Expect = 6.687e-83 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AVLLDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1) HSP 1 Score: 284.263 bits (726), Expect = 4.296e-82 Identity = 137/173 (79.19%), Postives = 145/173 (83.82%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MREIISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD ++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173 HSP 2 Score: 43.5134 bits (101), Expect = 4.296e-82 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AVLLDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1) HSP 1 Score: 284.263 bits (726), Expect = 4.296e-82 Identity = 137/173 (79.19%), Postives = 145/173 (83.82%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MREIISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD ++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173 HSP 2 Score: 43.5134 bits (101), Expect = 4.296e-82 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AVLLDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 9.534e-82 Identity = 137/173 (79.19%), Postives = 145/173 (83.82%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MREIISIHIGQAGIQVGN+CWELYCLEHGI+ DG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173 HSP 2 Score: 43.5134 bits (101), Expect = 9.534e-82 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AVLLDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 1.622e-81 Identity = 126/166 (75.90%), Postives = 139/166 (83.73%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE I IHIGQAG QVGN+CWEL+CLEHGI PDG MPSD TIGV DAFNTFFSET AG+HVPRAVF+DLEPTV+DEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLV++AV VDYGK+ K Sbjct: 1 MREAICIHIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSK 166 HSP 2 Score: 58.9214 bits (141), Expect = 1.622e-81 Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHTHVCRAIGQ*TYFEL 772 KKSKLG+ +YPSPQVSTAVVEP NSV STH EHT V + ++L Sbjct: 163 KKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDL 212
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 2.116e-81 Identity = 125/166 (75.30%), Postives = 139/166 (83.73%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE I IHIGQAG QVGN+CWEL+CLEHGI PDG MPSD TIGV DAFNTFFSET AG+HVPRAVF+DLEPTV+DE+RTG+YRQLFHPEQLISGKEDAANN+ARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLV++AV VDYGK+ K Sbjct: 1 MREAICIHIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEIRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSK 166 HSP 2 Score: 58.9214 bits (141), Expect = 2.116e-81 Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHTHVCRAIGQ*TYFEL 772 KKSKLG+ +YPSPQVSTAVVEP NSV STH EHT V + ++L Sbjct: 163 KKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDL 212
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 3.600e-81 Identity = 136/173 (78.61%), Postives = 145/173 (83.82%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MREIISIHIGQAGIQVGN+CWELYCLEHGI DG MPSD+++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEHDGTMPSDSSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173 HSP 2 Score: 43.5134 bits (101), Expect = 3.600e-81 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AVLLDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1) HSP 1 Score: 278.485 bits (711), Expect = 2.312e-80 Identity = 135/173 (78.03%), Postives = 143/173 (82.66%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MREIISIHIGQAGIQVGN+CWELYCLEHGI DG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL RVR+L+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIQQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLGRVRQLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173 HSP 2 Score: 43.5134 bits (101), Expect = 2.312e-80 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AVLLDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 3.016e-80 Identity = 125/166 (75.30%), Postives = 139/166 (83.73%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE+ISIHIGQAG QVGN+CWELYCLEHGI PDG MPSD ++G DAFNTFFSET AG+HVPRAVF+DLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDLCLDRVRKL+D CTGLQGFLVF++V VDYGK+ K Sbjct: 1 MREVISIHIGQAGTQVGNACWELYCLEHGIQPDGQMPSDKSVGYGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRVRKLADQCTGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSK 166 HSP 2 Score: 55.4546 bits (132), Expect = 3.016e-80 Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHTHV 736 KKSKL F +YPSPQVSTAVVEP NSV STH EHT V Sbjct: 163 KKSKLDFCVYPSPQVSTAVVEPYNSVLSTHSLLEHTDV 200 The following BLAST results are available for this feature:
BLAST of DY260462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 408
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260462 ID=DY260462; Name=DY260462; organism=Citrus clementina; type=EST; length=1189bpback to top |