DY260473

Overview
NameDY260473
Unique NameDY260473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1277
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1550 contig Ccv1_Contig1550:1..1277. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260473 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.333e-53
Identity = 119/236 (50.42%), Postives = 162/236 (68.64%), Query Frame = 1
Query:    1 VSFICSDIEEVSKQQAILRKKGGLGSFAELANDD---LSGLNIPSLNIIDNDCSATMGSRKRFRPE-LQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKP--SGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGY--SEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFECDAI 684
            VS + SDIE+V K+Q IL+K+G   S ++ + DD    SG  + S    + + SA + SRKR R   L L +  E D+            ++  +L +SSRLM+NFKKLES YFLTR R +K   SG+ L RHS LSS+      +V+E+SS++N  + + +  ++ R+ GWI+PFLEGLC+YLSFS+LRVKADL QGDLLNSS+LVC+L+FDR+GELFA AGVNKKIK+FEC++I
Sbjct:  345 VSLLSSDIEQVVKRQLILKKRGS--SLSDFSKDDHQYTSGQPLMSFQA-NEEPSAFLASRKRVRQGILALENGVEVDEE-----------SQGSTLLESSRLMRNFKKLESVYFLTRRRQMKAAASGKSLTRHSPLSSENGRGSMIVSEKSSVSNPVAPKAFFNNDSRQGGWIDPFLEGLCRYLSFSQLRVKADLKQGDLLNSSNLVCALAFDREGELFATAGVNKKIKIFECNSI 566          

HSP 2 Score: 30.4166 bits (67), Expect = 2.333e-53
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  723 EMARRSKQTSIWWNHYIQKPKLAPSNF 803
            E+A RSK +S+ WN YI K ++A SNF
Sbjct:  579 ELAGRSKLSSLCWNSYI-KSQIASSNF 604          
BLAST of DY260473 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.237e-49
Identity = 110/234 (47.01%), Postives = 149/234 (63.68%), Query Frame = 1
Query:    1 VSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSG---RPLVRH-SQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFECDAIHK 690
            +S + SDI++V K+Q +L++KG                          D  + + SRKR R   +    EE +D+   +++  L    E +L +SSRLM+N KKLES YF TR R +K +    +PL R+ S LS +GR+S     E+SS++   SK+  ++ R+ GWI+PFLEGLCKYLSFSKLRVKADL QGDLLNSS+LVC++ FDRDGE FA AGVNKKIK+FEC++I K
Sbjct:  316 ISLLSSDIDQVVKRQLVLQQKG-------------------------RDVRSFLASRKRIRQGAETTAAEEENDDNSIDEESKLDDTLESTLLESSRLMRNLKKLESVYFATRYRQIKAATAAEKPLARYYSALSCNGRSS-----EKSSMSQ-PSKDPINDSRQGGWIDPFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK 518          

HSP 2 Score: 29.6462 bits (65), Expect = 4.237e-49
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  723 EMARRSKQTSIWWNHYIQKPKLAPSNF 803
            E+A RSK + I WN YI K ++A SNF
Sbjct:  529 ELASRSKLSGICWNSYI-KSQVASSNF 554          
BLAST of DY260473 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.039e-18
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = 1
Query:  283 SSRLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVN-ERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFECDA 681
            + RLM N ++LE AYF  R +         +  S  ++  R+ K L + +R S N   +++  ++G+ S  +  F EGLCK+  +SK      +  GDLLNS+ +VCSLSFD D E  AAAG++KKIK+F+ +A
Sbjct:  623 TDRLMSNIRQLEDAYFFMRSQ---------INLSSSAATARSDKTLKDRDRCSENQNENQDMSTKGKSSDQLEVFFEGLCKFARYSKFETCGTIRSGDLLNSASVVCSLSFDPDEEHIAAAGISKKIKIFDFNA 747          

HSP 2 Score: 23.0978 bits (48), Expect = 1.039e-18
Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  723 EMARRSKQTSIWWNHYIQ 776
            EM  +SK + + WN YI+
Sbjct:  761 EMVNKSKLSCVCWNSYIK 778          
BLAST of DY260473 vs. ExPASy Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.321e-17
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  289 RLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFECDAI 684
            RL++N  +LESAYF  R     P  R  +R  +          L N  +++  + + E +S   R G    F +GLCKY  +SK   +  L   +L N+S+++CSL FDRD + FA AGV+KKIK++E +++
Sbjct:  635 RLIRNINQLESAYFAARIDAHLPEARYRLRPDR--------DLLRNSDNTVAEVENSETWSSDDRVG---AFFDGLCKYARYSKFETRGVLRTSELNNTSNVICSLGFDRDEDYFATAGVSKKIKIYEFNSL 755          

HSP 2 Score: 25.409 bits (54), Expect = 5.321e-17
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  723 EMARRSKQTSIWWNHYIQKPKLAPSNF 803
            EM  RSK + + WN+YI+   LA S++
Sbjct:  768 EMPNRSKLSGVCWNNYIRN-YLASSDY 793          
BLAST of DY260473 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.071e-12
Identity = 63/224 (28.12%), Postives = 105/224 (46.88%), Query Frame = 1
Query:   25 EEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLH-HLEECDDNL--DDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPV-KPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFECDAI 684
            +  S +  +L   GG  S     + + SGL    LN+     S +   +   + ++  H H  +  D +   D+Q  N +G    +L +  R+   F  L+  Y   R +   KP G+                    ER +  N  S+EGYS G     ++ F   L  +  +S+LRV A++  GD+ +S+++V S+ FDRD +LFA AGV+++IKVF+  A+
Sbjct:  206 DRYSVKLRMLDDSGGRKSRHSSMDLNSSGLASSPLNLRGGLSSGSHTKKNDGKSQISSHGHGIQRRDPITGSDSQYINQSG---LALVRKKRVHTQFNDLQECYLQKRRQAADKPHGQ-------------------QERDT--NFISREGYSCG-----LDDFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAV 400          

HSP 2 Score: 22.7126 bits (47), Expect = 9.071e-12
Identity = 11/27 (40.74%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  723 EMARRSKQTSIWWNHYIQKPKLAPSNF 803
            EM  RSK + + WN Y  K ++A S++
Sbjct:  413 EMTTRSKLSCLSWNKY-AKNQIASSDY 438          
BLAST of DY260473 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.354e-11
Identity = 47/150 (31.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  238 QKHNLTGNEERSLFKSSRLMKNFKKLESAYF-LTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFECDAI 684
            +K  L+G++ +SL +S+  M   K++ + +  L  C         L +  QL+    + +   N++S +     +EGYS G     +  F   L  +  +S+LRV A++  GD+ +S+++V S+ FDRD ELFA AGV++ IKVF+  ++
Sbjct:  273 KKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECY--------LQKRRQLADQPNSKQE--NDKSVVR----REGYSNG-----LADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSV 403          
The following BLAST results are available for this feature:
BLAST of DY260473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SPA3_ARATH2.333e-5350.42Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=... [more]
SPA4_ARATH4.237e-4947.01Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=... [more]
SPA1_ARATH1.039e-1838.81Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis th... [more]
SPA2_ARATH5.321e-1736.36Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=... [more]
COP1_PEA9.071e-1228.13E3 ubiquitin-protein ligase COP1 OS=Pisum sativum ... [more]
COP1_ARATH9.354e-1131.33E3 ubiquitin-protein ligase COP1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260473 ID=DY260473; Name=DY260473; organism=Citrus clementina; type=EST; length=1277bp
GTTTCTTTTATATGTTCAGATATTGAAGAAGTATCAAAGCAGCAAGCAAT
TCTTAGGAAAAAAGGAGGCTTAGGTTCATTTGCAGAGTTGGCGAATGATG
ATCTCTCTGGTTTAAACATCCCTTCTTTAAATATTATTGATAACGATTGT
TCTGCTACCATGGGTTCGAGAAAACGATTTAGACCGGAACTTCAGCTCCA
TCACTTAGAGGAATGTGATGATAATCTTGATGACAATCAGAAACACAACC
TCACTGGAAATGAAGAAAGAAGTCTTTTTAAAAGCTCTCGATTGATGAAG
AACTTCAAAAAGTTGGAGTCAGCATATTTTTTGACAAGATGTAGACCAGT
CAAGCCATCAGGGAGACCACTGGTTAGACATTCTCAATTAAGTAGTGATG
GTAGAACATCTAAACCACTTGTAAATGAAAGAAGTTCCATAAACAATTTA
GGATCAAAAGAGGGGTATAGTGAAGGTCGAAGAAGTGGATGGATAAATCC
ATTTCTTGAGGGTTTGTGCAAGTATCTGTCTTTCAGTAAGTTGAGGGTCA
AGGCAGACCTGAACCAAGGAGATTTATTAAACTCTTCCCACCTAGTATGC
TCTCTCAGCTTTGATCGTGATGGAGAATTATTTGCTGCCGCTGGTGTAAA
TAAGAAGATTAAAGTATTTGAATGTGATGCCATCCATAAATGAAAATCCT
GATATCCCCCATCCGGTGGGGGGAAATGGCCAGAAGGTCAAAACAAACCA
GTATATGGTGGAACCATTATATCCAAAAGCCAAAATTGGCTCCAAGTAAC
TTTTGAAGGGGGGGGGGGCAGGGAAGGGGAAGGTTCCACGAAATCCAGAA
CCTCACAAAAGTAAAAAACCCCAAGAGGCGTGGTTTGGGCCCTTTACTTC
TTTCTCTCAAACAAAACCAACATCGCTTGCGTACGGGGGACCCGAGGCGG
GTCCCAATTAGCCACGGGACCCTACACCCACCGCGGGGACTTCCCAGATT
CCCCCAAGACCACAGAGCCACGCGCAGCCCGATCGCCCCATTCCCCCCGG
GAGCTTCCCGCCCCGTCCCCCCTTGACCCCGGCTTGAGTCCCAAACCACC
ACTAACTAACCAATACCGATGACCCCCCCTTCCTCCCCCTCTCTCTTCCC
GCGGGGGCCCTGTCGTTGACAGGCATACACACCGCAAACACTATATGCAG
TGCTACTCCGCAACGCACACGTTAATTCAATTCTAGTCATCTACCCCCAA
TACCCTGTTACCCTGCTCGTTTTTCGT
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