DY260475

Overview
NameDY260475
Unique NameDY260475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1551 contig Ccv1_Contig1551:1..1316. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260475 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.337e-27
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   20 GALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPPMAMAGF 421
            G ++TA +V+YALTSGI+GY +A  Y  + G  W  N++LT  LF  PLF+     NTVAI +++T ALP                PL V+GGIAG+     F+APCRT  +PRE+PP+ WYR     + +AGF
Sbjct:  320 GNMYTAGIVLYALTSGISGYQSAKMYKNMGGNKWAWNIVLTATLFVAPLFIVVILSNTVAITWHSTVALPILTMIEVITIWLFVGFPLTVVGGIAGRRLSENFEAPCRTKNFPREVPPIQWYRRLPCQILIAGF 453          
BLAST of DY260475 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.402e-25
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   20 GALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPPMAMAGF 421
            GA+ +A +++YALT  I+GY ++ FY Q+ G  WV N++LT  LF  P FLT+  +N+V  A  +T ALP                PL V+GGI GKN+ + F APCRT    REIPP PWY+S +  M + GF
Sbjct:  339 GAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTSSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGF 472          
BLAST of DY260475 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.391e-25
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   20 GALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPPMAMAGF 421
            GA+ +A +++YALT  I+GY ++ FY Q+ G  WV N++LT  LF  P FLT+  +N+V  A  +T ALP                PL V+GGI GKN+ + F APCRT    REIPP PWY+S +  M + GF
Sbjct:  339 GAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGF 472          
BLAST of DY260475 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.391e-25
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   20 GALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPPMAMAGF 421
            GA+ +A +++YALT  I+GY ++ FY Q+ G  WV N++LT  LF  P FLT+  +N+V  A  +T ALP                PL V+GGI GKN+ + F APCRT    REIPP PWY+S +  M + GF
Sbjct:  339 GAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGF 472          
BLAST of DY260475 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.391e-25
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   20 GALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPPMAMAGF 421
            GA+ +A +++YALT  I+GY ++ FY Q+ G  WV N++LT  LF  P FLT+  +N+V  A  +T ALP                PL V+GGI GKN+ + F APCRT    REIPP PWY+S +  M + GF
Sbjct:  339 GAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTLVHMTVGGF 472          
BLAST of DY260475 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.960e-21
Identity = 53/120 (44.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:   20 GALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLP 379
            GA+ +A +++YALT  I+GY ++ FY Q+ G  WV N++LT  LF  P FLT+  +N+V  A  +T ALP                PL V+GGI GKN+ + F APCRT    REIPP P
Sbjct:  339 GAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPVTTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQP 458          
BLAST of DY260475 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.216e-14
Identity = 47/139 (33.81%), Postives = 63/139 (45.32%), Query Frame = 2
Query:   20 GALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPPMAMAGFPAI*C 436
            GAL T  VV++ L    AGY AA FY    G  W  N+LLT  L  G +F  F  +N +     ++AA+PFG              PL  +G   G    A  + P RT + PR+IP   +Y   +P + M G     C
Sbjct:  397 GALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA-IEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGC 534          
BLAST of DY260475 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.216e-14
Identity = 47/139 (33.81%), Postives = 63/139 (45.32%), Query Frame = 2
Query:   20 GALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPPMAMAGFPAI*C 436
            GAL T  VV++ L    AGY AA FY    G  W  N+LLT  L  G +F  F  +N +     ++AA+PFG              PL  +G   G    A  + P RT + PR+IP   +Y   +P + M G     C
Sbjct:  397 GALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA-IEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGC 534          
BLAST of DY260475 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.216e-14
Identity = 47/139 (33.81%), Postives = 63/139 (45.32%), Query Frame = 2
Query:   20 GALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPPMAMAGFPAI*C 436
            GAL T  VV++ L    AGY AA FY    G  W  N+LLT  L  G +F  F  +N +     ++AA+PFG              PL  +G   G    A  + P RT + PR+IP   +Y   +P + M G     C
Sbjct:  396 GALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA-IEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGC 533          
BLAST of DY260475 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.216e-14
Identity = 47/139 (33.81%), Postives = 63/139 (45.32%), Query Frame = 2
Query:   20 GALFTALVVIYALTSGIAGYTAASFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPPMAMAGFPAI*C 436
            GAL T  VV++ L    AGY AA FY    G  W  N+LLT  L  G +F  F  +N +     ++AA+PFG              PL  +G   G    A  + P RT + PR+IP   +Y   +P + M G     C
Sbjct:  397 GALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA-IEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGC 534          
The following BLAST results are available for this feature:
BLAST of DY260475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PHG1B_DICDI3.337e-2744.03Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S1_MOUSE1.402e-2544.03Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_PONAB2.391e-2544.03Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_HUMAN2.391e-2544.03Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN2.391e-2544.03Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S1_RAT7.960e-2144.17Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S2_RAT7.216e-1433.81Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB7.216e-1433.81Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE7.216e-1433.81Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN7.216e-1433.81Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260475 ID=DY260475; Name=DY260475; organism=Citrus clementina; type=EST; length=1316bp
TTTTATCCATACCATTTGAGGAGCTCTATTTACAGCACTGGTGGTCATAT
ATGCACTCACTTCTGGGATTGCGGGATACACAGCTGCTTCTTTCTACTGT
CAGCTAGAAGGAACAAACTGGGTGAGGAATCTGTTGCTGACTGGATGCCT
TTTCTGTGGTCCTCTGTTTCTGACATTCTGCTTCCTGAACACTGTTGCCA
TTGCTTACAATGCGACAGCAGCACTGCCATTTGGCACAATTGTGGTGATA
GTCCTCATATGGACATTAGTCACATCACCTCTACTTGTGTTGGGAGGTAT
TGCTGGTAAAAACAGCAAGGCAGAGTTCCAAGCTCCTTGTCGTACGACCA
AGTACCCTCGAGAGATCCCACCACTACCTTGGTATAGGAGTGCTATTCCT
CCAATGGCAATGGCAGGTTTCCCCGCCATTTAGTGCCCTCTACATTGAAG
CTTTACTATACTCTTTGCCCACTGTCTGCGGCCCCCGCACTTACCCCACT
ACCAGCCTCCTCCTCACTCGCTCTATCATTCAGTTAGATACAACCACCTA
TACACCCAGCCCCCCCCCACTCAACATCCCGCTCTCAGCCTATACTAATG
CAATTCTCGTCGAACGCACCCGCATATAACCACCCACCACCTACCCTCCA
ACAGCATCCCATTCTCGTACCATACAGCCTCACAATCCATCATCCCTCTA
CCGATACGTTCAAAAGCACCTATCACCCCCTCCCACTTACTCTCTCTTCC
CCCTCTTCTCTACCCTTCTACCATTTCCAATCTCCTGCCACCACCACTAC
TCCACCCAAAACTCAACCAAACATATTCTTCCCATCGCACTCTACCCAAC
AACCTCTCACCTCCGCATCGCAGTAACCCCTCTCGACACCCCCCCACGCC
TTCTTCATACCCTCACCCCCCCAACACCCATCCTCCCACCACCTCCCCAC
CCACCACCACTACCACCTCCTACGCCCCGCCCCCCATCCCACCACGCCCT
CTGCAACCCCACACACGCTCTATACCTTTTACACCACTTATTCTACCACT
CTCTCACTATCCCTCTTTACATACCACTCTCTACATAACATACACTAGCA
TCTACTCCCCTCCCTATTACATCCATACCTAACTACACCCTATCATCCTT
AACCACTTTTCTCCTCTGCATATAACTACTCAAGCACGCCGACCTCACCC
AGTCCCAAAACTCCGTCACACAGTGCCATCTCCCTGCCACTACCACCTGG
CCCCCAACATTACCATCCCGTACCCGAAACAAAACTCAACTATACACAAC
CACCTTAACCCCACAC
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