DY260476

Overview
NameDY260476
Unique NameDY260476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1279
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1552 contig Ccv1_Contig1552:1..1279. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260476 vs. ExPASy Swiss-Prot
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.016e-21
Identity = 61/158 (38.61%), Postives = 83/158 (52.53%), Query Frame = 2 
Query:   23 KYSMSVSMYRGGGGV--YDMXXXXXXXXXXXXXXXRIVYLGMPIVSAVTELLIA*FMWLDFDNASKPIYLYLNLPLGNRMKKKRVLETKMKHMP*LMPWLIVLSQVYTVNCGPGYRPTTFASFFGPKGYRGFLPQFLPQILICPPLVGTMGPLLEYWV 490
            +YSMSV MYRGGGG    +                RI YLGMPIV AVTELL+A FMWLD+DN +KPIYLY+N P G + +K   + ++ +            S VYT+NCG  +         G KGYR   P    ++ + P +  + G  ++ W+
Sbjct:  145 RYSMSVQMYRGGGGGGGSERPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSP-GTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYL-PKVNRSSGAAIDMWI 300
The following BLAST results are available for this feature:
BLAST of DY260476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CLPR1_ARATH2.016e-2138.61ATP-dependent Clp protease proteolytic subunit-rel... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260476 ID=DY260476; Name=DY260476; organism=Citrus clementina; type=EST; length=1279bp
CATGAGTGATAGGCTTTCTTCAAAGTATAGTATGAGTGTGAGCATGTATC
GTGGAGGAGGTGGAGTATATGATATGCCCCAATCTGCTCCTCCTGACTTA
CCTTCTTTGCTGTTAGATGCTCGGATTGTCTATCTTGGAATGCCCATTGT
ATCTGCAGTGACTGAGCTTCTTATTGCTTAGTTTATGTGGTTGGATTTTG
ATAATGCCTCCAAGCCTATATATCTATACCTAAATCTCCCTCTGGGAAAC
AGAATGAAAAAAAAGAGAGTGTTGGAAACCAAAATGAAGCATATGCCATA
GCTGATGCCTTGGCTTATTGTTTTATCACAAGTCTATACCGTAAATTGTG
GGCCGGGCTATCGTCCAACCACCTTTGCTTCATTTTTTGGACCCAAGGGT
TACCGCGGTTTTCTGCCCCAATTTCTCCCTCAAATTTTAATTTGCCCCCC
TCTGGTAGGAACAATGGGTCCGTTACTCGAATATTGGGTGCTACGGGTCT
AACAAACCCCAAACCAATGCCCTAAACGCTTTCCTCTCACCTTTTATCGC
AAACGACACCGTAAAACCCCCTGAGGAAAATTTTTTTAATACCATTAATG
ATCTACCATCCAATCCCACCCTCACCACGATTTCATCGCCTTTGCCTTGT
CTCATGGAAGTCTTCTACTCTTCCCAGCACGAGCCTTACTGTTATAAGAT
CGAATGCTCACTCCTTCTTCACACATCACACCCAAATATTTCATTCAAAA
CATATCAGCATGCGACCCACCGCAACTCGCCTTACAAGAACAATATCTAC
TCCACCCCAATCCTAAAACAATATTATCATATCTTTCCAAAACTCTCTCA
CTTCATTATTAACACTCAACACCACACTCCCATACCCTCACTCTATCACA
ATAAATCTTCACCATCGATCATCCGAACCCAACGGCACTTCCAACCCCAG
CCCACCACACTACATGCCCCACTCCCTCCTCCTCTCTCCTCCATCATCTC
CTCCTCTATCTCGTTACAACTCTATGTACAACCAACCTCCAATCTACCTC
TTCGCTCCTTAACGACTGCAAAACCATACTCAACTTGATGTGATATACTA
CATCGCAGCCCCTCTCGTGCACATGCCATATCTAGCTTCTTCATTCTGCT
CGCCCGACCGTCCCCCTCATTCATCACTCTTGCCCCGCCCCTCTCCCGCC
CTCTTATGCTTCTCACTTCAGTTATCCCCCATTCGACTCTATCCTACCGT
GTGACCTCTCTTATCTCTCCTTCTTCATT
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