DY262450

Overview
NameDY262450
Unique NameDY262450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1305
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262450_ssr220 microsatellite DY262450_ssr220:220..243. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H2_ARATH (Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 6.156e-58
Identity = 105/152 (69.08%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  416 HFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEIXXXXXXXXXXXXXXXQKIXXXXXXXXXXXXVNSSPTSTLLGNM 871
            HFRM+EFKIRRCTRSRSHDWTDCPFAHP EKARRRDPRR+ YSG VC E+RRGG CS GDDCEFAHGVFECWLHP RYRTEACKDGK+CKRKVCFFAHSPRQLR+LP                                 +SSPTSTLLGN+
Sbjct:   82 HFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLP----------PENVSGVSASPSPAAKNPCCLFCSSSPTSTLLGNL 223          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H61_ARATH (Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis thaliana GN=At5g44260 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.676e-55
Identity = 92/107 (85.98%), Postives = 99/107 (92.52%), Query Frame = 2
Query:  416 HFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILP 736
            HFRMYEFKIRRCTRSRSHDWTDCPF+HP EKARRRDPRR+HY+G VC E+ R G CS GD+C FAHGVFECWLHPSRYRTEACKDGK+CKRKVCFFAHSPRQLR+LP
Sbjct:   60 HFRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRDPRRFHYTGEVCPEFSRHGDCSRGDECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRVLP 166          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 5.223e-49
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = 2
Query:  416 HFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRIL 733
            HFRMY+FK+RRC R RSHDWT+CP+AHP EKARRRDPR+YHYSG  C ++R+ GGC  GD CEFAHGVFECWLHP+RYRT+ CKDG NC RK+CFFAHSP QLR L
Sbjct:   79 HFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRK-GGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFL 183          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.910e-49
Identity = 79/107 (73.83%), Postives = 93/107 (86.92%), Query Frame = 2
Query:  416 HFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILP 736
            HFRMYEFK+RRC R RSHDWT+CP+AHP EKARRRDPR++HYSG  C E+R+ G C  GD CEF+HGVFECWLHP+RYRT+ CKDG NC+R+VCFFAHSP Q+R+LP
Sbjct:   78 HFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRK-GCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLP 183          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.985e-48
Identity = 79/106 (74.53%), Postives = 92/106 (86.79%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILP 736
            FRMYEFK+RRC R RSHDWT+CPFAHP EKARRRDPR+YHYSG  C ++R+ GGC  GD CE+AHGVFECWLHP+RYRT+ CKDG  C+R+VCFFAH+P QLR+LP
Sbjct:   77 FRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRK-GGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLP 181          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 7.542e-48
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILP 736
            FRMYEFK+RRC R RSHDWT+CPFAHP EKARRRDPRRY YSG  C ++R+GG C  GD CEFAHGVFECWLHP+RYRT+ CKDG  C+R+VCFFAH+P QLR+LP
Sbjct:   78 FRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGG-CKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLP 182          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.866e-47
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILP 736
            FR+YEFKIRRC R RSHDWT+CPFAHP EKARRRDPR++HYSG  C E+R+ G C  GD CEF+HGVFECWLHPSRYRT+ CKDG +C+R++CFFAH+  QLR+LP
Sbjct:   91 FRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRK-GSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLP 195          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.799e-41
Identity = 69/105 (65.71%), Postives = 83/105 (79.05%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRIL 733
            FRMY FK+R C+R+ SHDWT+CPF HP E ARRRDPR+YHYS   C E+++G GC  GD CE+AHGVFE WLHP++YRT  CKDG  C R+VCFFAH+P +LR L
Sbjct:  174 FRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKGAGCRRGDMCEYAHGVFESWLHPAQYRTRLCKDGVGCARRVCFFAHTPDELRPL 278          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.069e-41
Identity = 70/105 (66.67%), Postives = 83/105 (79.05%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRIL 733
            FRMY FKI+ C+R+ SHDWT+CPF HP E ARRRDPR+YHYS   C E+R+G  CS GD CE+AHG+FECWLHP++YRT  CKD  NC R+VCFFAH P +LR L
Sbjct:  210 FRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGS-CSRGDTCEYAHGIFECWLHPAQYRTRLCKDETNCSRRVCFFAHKPEELRPL 313          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.166e-40
Identity = 67/103 (65.05%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLR 727
            FRMY FK++ C+R+ SHDWT+CPF HP E ARRRDPRRY YS   C E+R+GG C  GD CE+AHGVFECWLHP++YRT  CKD   C R++CFFAH P +LR
Sbjct:  213 FRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDELR 315          
The following BLAST results are available for this feature:
BLAST of DY262450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
C3H2_ARATH6.156e-5869.08Zinc finger CCCH domain-containing protein 2 OS=Ar... [more]
C3H61_ARATH1.676e-5585.98Zinc finger CCCH domain-containing protein 61 OS=A... [more]
C3H49_ARATH5.223e-4975.47Zinc finger CCCH domain-containing protein 49 OS=A... [more]
C3H20_ARATH8.910e-4973.83Zinc finger CCCH domain-containing protein 20 OS=A... [more]
C3H2_ORYSJ1.985e-4874.53Zinc finger CCCH domain-containing protein 2 OS=Or... [more]
C3H35_ORYSJ7.542e-4875.47Zinc finger CCCH domain-containing protein 35 OS=O... [more]
C3H23_ARATH2.866e-4772.64Zinc finger CCCH domain-containing protein 23 OS=A... [more]
C3H67_ORYSJ1.799e-4165.71Zinc finger CCCH domain-containing protein 67 OS=O... [more]
C3H66_ARATH3.069e-4166.67Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H33_ORYSJ1.166e-4065.05Zinc finger CCCH domain-containing protein 33 OS=O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AA10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262450 ID=DY262450; Name=DY262450; organism=Citrus clementina; type=EST; length=1305bp
CCAAAATTTATCACTCCAAAATTCATCACACAACAACAACTAATTCTCTC
TCTTCTAGATTCCCATTCATTTTTCATTTTCTTTTTCTAGGCTTCTAGCT
ATGAGCAGTGCTGCTGATCAGCAACATAAGCTTCTTTCACCAAAGAGTAA
TGGTGCAAAACTCTTATTCAAAGACATTGAAGTCCCTCCAAGAAAGCTTC
TCCTTCAAAACAAGAAATCCCACCACCACCACCACCACCACCATCATCAT
CAAGATATCTGCAGCGGTAGCCCTCGCTCTGGCTCTGGCTCTGACTCAGC
CTCTTACTTATTCTATCCCGATCAACAAGAAATGAACATCCTTCATAATA
AATTCTTACCTTTCAACAACACTGACGCCGACTCAGACCCCGACTCCGAT
CCTTACGCATCTGACCATTTCCGTATGTACGAGTTCAAGATCCGCCGCTG
CACCCGCAGCCGCAGCCACGACTGGACAGACTGTCCTTTCGCCCATCCCA
GCGAGAAGGCCCGCCGCCGTGACCCCCGCCGGTATCATTACTCCGGGGCC
GTTTGCTCCGAGTACCGCCGTGGCGGCGGCTGCAGCCTTGGAGATGACTG
TGAGTTTGCTCACGGAGTCTTCGAGTGCTGGCTTCACCCTTCAAGGTACA
GAACTGAAGCCTGCAAAGATGGCAAGAATTGCAAGCGCAAGGTCTGTTTC
TTTGCTCATTCTCCTCGTCAGCTTCGCATTTTGCCAGAAATTTCATCACA
GTACTCCAGCTCTCCCTCCTCTGTTAACAACAACAATCAGAAGATCAGTA
GCCATTGTTGCATGTATTGTCATCACCACTCTGTCAATTCATCCCCAACA
AGCACTTTGTTGGGCAACATGTCTCATTTATCACGTTCCCCTTCTCTTTC
ACCTCCATTGTCGCCGGTGAAACATGGGTTGATCTCGCCGATTTCTAGGT
ACAGTGCTACTACTCCTGTTCCTGCTGATCGCTTAAGCAAGTTTAGCAAC
TCATCAAAAATGGTCATGAGTTACAAGAATGGGCTCATGACCTGATGACT
TCTATGGAAGCCAATCAGTTTAATGAAATTTCATTCTCCAGGTCCCGGGA
CCCTAAAAAAGGGAGTTTAAGGCTGGTCCCTGGGATTGAAGGAAATTTCA
TCCAAGGTTAAAAAATTACCAACACTTTTGTTTTTTTTCCCCTTCTAAAC
CAAACCCCCCCCAACCGGGGGGTACAATCAGGAGAATCCCGGGTTGGCGG
GGCCCCCCCATGGAAAATTATTATTTTTCTATAAAAAAAGGATCCTTTTT
TTTTT
back to top