DY262453

Overview
NameDY262453
Unique NameDY262453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1305
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262453_ssr255 microsatellite DY262453_ssr255:255..266. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262453 vs. ExPASy Swiss-Prot
Match: RBP9X_DROME (Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.253e-34
Identity = 74/205 (36.10%), Postives = 108/205 (52.68%), Query Frame = 1
Query:  331 VSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFD-----LKEYEAQERMKQQMTIEKISLPPNVSYGLVRSYLQHYGYEDT 930
            +S + L V Y  V     D   V+   P P    +YYFE+ +   G  G + IG T++ F+M R PGW+  S GYHGDDG  +   G G+ +GPTFTT D +G  +N+ +   F+TKNG  +G  ++D+   L+PT+ + +  EEV  NFGQ+ F FD     +KE  +    K       +  P N+   LV +YL H  +  T
Sbjct:  433 LSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIGCCVNFVNNTCFYTKNGVDLGIAFRDLPTKLYPTVGLQTPGEEVDANFGQEPFKFDKIVDMMKEMRSNVLRKIDRYPHLLETPENLMNRLVSTYLVHNAFSKT 637          
BLAST of DY262453 vs. ExPASy Swiss-Prot
Match: RBP10_MOUSE (Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.137e-34
Identity = 74/209 (35.41%), Postives = 111/209 (53.11%), Query Frame = 1
Query:  322 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPN------VSYGLVRSYLQHYGYEDT 930
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD+++Y  + R K Q T+    +         V   +V SYL H+GY  T
Sbjct:   93 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHGFPISARLGEWQAVLQNMVSSYLVHHGYCST 301          
BLAST of DY262453 vs. ExPASy Swiss-Prot
Match: RBP10_HUMAN (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.646e-34
Identity = 73/206 (35.44%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  322 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPN------VSYGLVRSYLQHYGY 921
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD+++Y  + R K Q T+    +         V   +V SYL H+GY
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGY 270          
BLAST of DY262453 vs. ExPASy Swiss-Prot
Match: RBP10_DANRE (Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.646e-34
Identity = 72/206 (34.95%), Postives = 111/206 (53.88%), Query Frame = 1
Query:  322 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPN------VSYGLVRSYLQHYGY 921
            ++ +S + L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD+++Y ++ R K    I +  +         V   +V SYL H+GY
Sbjct:   53 YIGLSQNNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGVAFTDLPPNLYPTVGLQTPGEIVDANFGQQPFVFDIEDYMSEWRAKIHSMIARFPIGERLGDWQAVLQNMVSSYLVHHGY 258          
BLAST of DY262453 vs. ExPASy Swiss-Prot
Match: RBP10_BOVIN (Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.646e-34
Identity = 73/206 (35.44%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  322 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPN------VSYGLVRSYLQHYGY 921
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD+++Y  + R K Q T+    +         V   +V SYL H+GY
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGY 270          
BLAST of DY262453 vs. ExPASy Swiss-Prot
Match: RANB9_MOUSE (Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.061e-33
Identity = 72/206 (34.95%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  322 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLP------PNVSYGLVRSYLQHYGY 921
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD+++Y  + R K Q  I++  +         +   +V SYL H+GY
Sbjct:  102 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSSYLVHHGY 307          
BLAST of DY262453 vs. ExPASy Swiss-Prot
Match: RANB9_HUMAN (Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.061e-33
Identity = 72/206 (34.95%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  322 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLP------PNVSYGLVRSYLQHYGY 921
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD+++Y  + R K Q  I++  +         +   +V SYL H+GY
Sbjct:  177 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSSYLVHHGY 382          
BLAST of DY262453 vs. ExPASy Swiss-Prot
Match: RANB9_XENLA (Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.363e-33
Identity = 72/206 (34.95%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  322 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLP---PNVSYGLVRSYLQHYGYEDT 930
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N      F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD+++Y  + R K Q  IE+  +     ++   +V SYL H+GY  T
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQSPFVFDIEDYIREWRSKIQAQIERFPVAGEWQSMIQRMVSSYLVHHGYCST 237          
BLAST of DY262453 vs. ExPASy Swiss-Prot
Match: RANB9_XENTR (Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.031e-33
Identity = 72/206 (34.95%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  322 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLP---PNVSYGLVRSYLQHYGYEDT 930
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N      F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD+++Y  + R K Q  IE+  +     ++   +V SYL H+GY  T
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQSPFVFDIEDYIREWRTKIQAQIERFPVGGEWQSMIQRMVSSYLVHHGYCST 237          
BLAST of DY262453 vs. ExPASy Swiss-Prot
Match: RANB9_DANRE (Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 5.264e-33
Identity = 72/206 (34.95%), Postives = 109/206 (52.91%), Query Frame = 1
Query:  322 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPN------VSYGLVRSYLQHYGY 921
            ++ +S + L V Y        D   V+A  P P    VYYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD+++Y  + R K Q  I++  +         +   +V SYL H+ Y
Sbjct:   59 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGVYYFEVKIISKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQSQIDRFPIGEREGEWQAMIQKMVASYLVHHSY 264          
The following BLAST results are available for this feature:
BLAST of DY262453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RBP9X_DROME1.253e-3436.10Ran-binding proteins 9/10 homolog OS=Drosophila me... [more]
RBP10_MOUSE2.137e-3435.41Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 ... [more]
RBP10_HUMAN3.646e-3435.44Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 ... [more]
RBP10_DANRE3.646e-3434.95Ran-binding protein 10 OS=Danio rerio GN=ranbp10 P... [more]
RBP10_BOVIN3.646e-3435.44Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE... [more]
RANB9_MOUSE1.061e-3334.95Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE... [more]
RANB9_HUMAN1.061e-3334.95Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE... [more]
RANB9_XENLA2.363e-3334.95Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 ... [more]
RANB9_XENTR4.031e-3334.95Ran-binding protein 9 OS=Xenopus tropicalis GN=ran... [more]
RANB9_DANRE5.264e-3334.95Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AB01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262453 ID=DY262453; Name=DY262453; organism=Citrus clementina; type=EST; length=1305bp
CTCTGACAAGTAACCAAACCCCCCGTCATTTTTGCTAAGTGCTACCCACC
TGAGGCTGAGGTTCCCAATTTCGCAAGTTACGAACTCCGAACTCTCCTGC
TCATGTATGATTCTTTGAAACAAGTGTAGGGTTTCACTTTATGCCAATTC
CAAACAATGAGCACAAACAACACTAACAACATTAAAAATGAAGATCTCGG
CTTGCACTTCCTCGCGCTGGCCCGGGCTTCTTCGAGCTCGATGGGCGGAA
AGCGGGAGGAGGAGGATTTTGAGGAAGAAGAGGTGCCGACGGAGCTGAAC
ACGATCAACAGCTCTGGAGGGTTCCTGGTGGTTTCGCCGGATAAGTTGTC
GGTCAAGTACACTAGCGTCAATCTGCACGGCCATGATGTCGGCGTCGTCC
AAGCTAACAAGCCGGCCCCTGTTAAGCGGCTTGTTTATTACTTTGAGATT
TACGTGGAGGACGCTGGTGCCAAGGGCCAGATTGCCATTGGATTTACCAG
TGAGTCTTTCAAGATGCGGAGGCAACCAGGGTGGGAAGCGAACAGTTGTG
GATACCATGGGGATGATGGATTGCTTTATCGTGGACAAGGAAAGGGAGAG
GCCTTTGGCCCTACGTTTACAACTAATGATACTGTTGGTGGTGGTATTAA
CTATGCTTCACAGGAATTTTTTTTCACTAAAAATGGTTCATTAGTAGGAG
CAGTGTACAAGGACATCAAGGGTCCCTTGTTTCCGACCATTGCTGTTCAC
AGCCAAAACGAGGAGGTTCTTGTCAACTTCGGCCAGAAAAAATTTGCTTT
TGATCTTAAGGAGTACGAAGCACAAGAGAGGATGAAGCAACAAATGACAA
TTGAAAAGATTTCACTACCCCCTAATGTCAGTTATGGACTTGTTCGCTCC
TACTTACAACATTATGGATATGAAGATACACTCAATTCATTTGATTTGGC
TGTAAAACTACTGTTCCTCCTGTCTTTGTTTGCCAAGAAAATGGCTTCAA
TGAACAAAAACATGTGGATGCTTTAATTCACCAAAAAACTCTAAAAAGCT
AAACAGGAATGGTGAAATTGAGGCTGCATTTGAAAAACTTCGAACTGGGC
ATCCCTGGAATGGTCAAGATAAAAAAAAACCAACTGGCTTTTTTCTTCCT
GGCCAAAAGTTTCATTTAAATTGGTTTTGGGTTTGGAGACCGGGGAAAGG
AAGGAAGTGAAAAAAAAGGGGAGGGAAAGGGAAAATACAAAAAAAAATTT
TTTTGGGGGTTTTGGCTGGGGGAAATTTTTTAAAGAAAAGAGTTTGGTTT
TGTTG
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