DY262457

Overview
NameDY262457
Unique NameDY262457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1317
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262457 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 2.563e-27
Identity = 63/125 (50.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   64 MEGLGSDG---AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXXXSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKF*YQTCEAAC 429
            MEG G D    A  V K   +  R +QYYLDK+TP++  RW+GTL    IY LRV+ + GFYI++Y              SP VDPELE  + A+LPT+GSDEFKPF+RRLPEFKF Y   +A C
Sbjct:    1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFC 125          
BLAST of DY262457 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.979e-25
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   64 MEGLGSDG---AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXXXSPSVDPELEALNTA-SLPTKGSDEFKPFVRRLPEFKF*YQTCEAAC 429
            M+  G D    A  V +   +  R +Q+YLDK+TP+   RW+GTL VA IY LRV+Y+QGFYI+ Y              SP VDPE   ++   SLPT+GSDEFKPF+RRLPEFKF Y   +A C
Sbjct:    1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFC 126          
BLAST of DY262457 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.034e-20
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   79 SDGAASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXXXSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKF 402
            S  A +V +    FS++ Q+ LDK+ P+ + RW+  L V  IY++RV++V+GFYI+TY              SP  DPE    +  SLPT+ SDE++PFVRRLPEFKF
Sbjct:   31 SSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKF 138          
BLAST of DY262457 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.709e-18
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  130 FQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXXXSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKF 402
            +Q +LDKSTP+T  RW+ TL ++ IY++RV+ +QG+YIVTY              SP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKF
Sbjct:   29 YQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121          
BLAST of DY262457 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.844e-18
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   97 VMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXXXSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKF 402
            V ++ S   + +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIVTY              SP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKF
Sbjct:   18 VYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121          
BLAST of DY262457 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.844e-18
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   97 VMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXXXSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKF 402
            V ++ S   + +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIVTY              SP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKF
Sbjct:   18 VYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121          
BLAST of DY262457 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.079e-17
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  130 FQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXXXSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKF 402
            +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIVTY              SP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKF
Sbjct:   29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121          
BLAST of DY262457 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.079e-17
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  130 FQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXXXSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKF 402
            +Q +LDKSTP T  RW+ TL ++ +Y++RV+ +QG+YIVTY              SP VDP L  ++ +  SLPTK ++EF+PF+RRLPEFKF
Sbjct:   29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121          
BLAST of DY262457 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.409e-17
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  130 FQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXXXSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKF 402
            +Q +LDKSTP T  RW+ TL ++ IY++RV+ +QG+YIVTY              SP VDP L  ++ +  SLPT+ ++EF+PF+RRLPEFKF
Sbjct:   29 YQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKF 121          
BLAST of DY262457 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.939e-15
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 1
Query:  127 KFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYXXXXXXXXXXXXXXSPSVDPELEALNTAS---LPTKGSDEFKPFVRRLPEFKF 402
            K+QYYLD+ TP+T  RW+  L     +  R+  +QGFYIV Y              +PS+DP LE  +      LP+K +DEF+PF+RRLPEFKF
Sbjct:   22 KYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKF 116          
The following BLAST results are available for this feature:
BLAST of DY262457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RER1B_ARATH2.563e-2750.40Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1A_ARATH6.979e-2548.41Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1C_ARATH3.034e-2044.44Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_BOVIN3.709e-1849.46Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_RAT4.844e-1845.19Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE4.844e-1845.19Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]
RER1_PONAB1.079e-1748.39Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN1.079e-1748.39Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_CHICK1.409e-1748.39Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]
RER1_CAEEL2.939e-1544.21Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AB05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262457 ID=DY262457; Name=DY262457; organism=Citrus clementina; type=EST; length=1317bp
AATCCCTAGCTTACTCATTTGCTTTAACATCAGAAGGAGCAGCGAGTAAC
AGTCTTTATTATCATGGAAGGATTAGGAAGTGATGGTGCCGCGTCTGTTA
TGAAATGGAAAAGCGATTTTTCAAGAAAATTTCAGTATTACTTGGATAAG
TCTACCCCTAATACGATGGAGAGGTGGTTAGGGACATTGGCAGTGGCAGC
TATATATGTTCTGCGTGTTTTCTATGTTCAAGGCTTTTATATTGTTACCT
ATGGTCTTGGGATCTATATATTGAACCTTTTGATTGGGTTTCTGTCACCA
AGTGTTGATCCTGAGCTTGAAGCTCTGAATACGGCTTCATTGCCAACAAA
GGGTTCTGATGAATTCAAGCCTTTCGTTCGACGTTTGCCTGAGTTTAAGT
TTTGATATCAGACCTGCGAAGCAGCATGCAAAAGAACTGGCCAACACTGG
CTTGCCCAAGCGGGAATGGCATAACATTTTAGAATGCTTACATCACTCAC
CTCCACATAACAAATGTCGAACATTATTCATTAAAAAAATAAATTCAACG
AATACCACCTGAAGAGCGCGATCAAGAGCATCCGAGCCAACGGGATGAGG
GCCCAGTTCAGTCAACGCTTTGACGTGCTTGATAGCCTCAAACTCGGAGA
ATCCTCTTTTGCCGGCCTGGTCAGCGGTGAGAGGAGGAGGCATATGCTCG
TACTGATAGTAGTAAACGCCGTAAGTGGCGTAGACGAAGGCCGCAAACGC
AACCGTCCATGCGAGCCCCGATCGCTTGGCGCTTCTCACGTCAACTGTCA
ATACTGCATCGCCATCGGTGAAGGATGGATGGTGGCTGTTGGTGGAGAGA
CGGAGGGAGGAGGTGCCGATTCTGAGACTTGTCGCGAATTCGCGATTTAN
GGTTGGCCCGGTGGGTTTGGGGGAAATTGGGCAAAGGAAAAATGTATTTT
TGTTTTATATTTCCTTTTTTTTTACTAAAAAAAAAAAGCGGGACACGGGT
CCGGTTCCGGGTTTCTGGGTGTTGTGAACGGGACCGTGCCCCGAAACACC
CGGGTATTGAAAAACATGGCCCGGAAACCCTTTTTTTTTTTCTTCCGTCC
GGGTTTTTACGGGAACGAAAGTGGCGGGGTCCGGTTCGGGGGGGGCTTTT
TTTGCCCTCCCTTAATATTGAAAGAAAAAACCCCCTTAAAATTTTTTAGG
GTTTTTTTGGAGGGGGATTTTTGGAAGGAAAAATTCCTTTTATATCTCTT
GGGGCCCCTAAAAAACGTGAAAAAAACCCTCCAAAAAAGAAAACAAACCC
ACACCCCCTCTTTTTTG
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