DY262465

Overview
NameDY262465
Unique NameDY262465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXB2_DICDI (Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.991e-41
Identity = 95/265 (35.85%), Postives = 147/265 (55.47%), Query Frame = 1
Query:  298 IWPLPAQFTSGNDTLSVDPALYLXXXXXXXXXXXXXEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLV--AKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLWKGAYSKWERYTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWGT**PNLWP 1086
            IWP+P +  +G+ T+ + P  +              +A +RY  +IF  + +  +  S+ N              +KI+V S++E LQ+G DESY + +  + ++G  II E      TVYGA+RGLET  Q+  FDY  +   +   PW IQD PR+  RG+++DTSRH+  VDV+K+ IE+++Y K NV H H +D QSFPL   T+P + KG++S  E Y+       +  + E  GI +  ++D+PGH  SWG   P++ P
Sbjct:   59 IWPMPKKVLNGDITVYISP--HFQFTTNLTKSTTLKKAMDRYYKLIFTEDSKSHSGISILNE-------------IKILVKSEDETLQIGFDESYEIYIDDSGDDGGKIIAE------TVYGAIRGLETLYQMIGFDYQREYYQIKHCPWIIQDSPRYPHRGVMLDTSRHFYSVDVLKEFIEALAYNKFNVFHWHAVDSQSFPLTSTTFPKITKGSWSSQEIYSTRDIKEIIQHAKE-YGIRVELEIDMPGHAYSWGIGYPSVLP 301          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXB1_DICDI (Beta-hexosaminidase subunit B1 OS=Dictyostelium discoideum GN=hexb1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.896e-38
Identity = 100/264 (37.88%), Postives = 137/264 (51.89%), Query Frame = 1
Query:  298 IWPLPAQFTSGNDTLSVDPALYLXXXXXXXXXXXXXEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKA-PWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLWKGAYSKWERYTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWGT**PNLWP 1086
            IWP P     GN+++ +                   +   +Y  +IF  +   +NS S  N   K          L I + S NE L+ G DESY L++  NE       + +E NTVYG +RGLETF QL  +++   S  +    P  I DKPRF  RG+++DTSRH+  VD I ++IES+SY K N LH HIID QSFPL   +YPNL  GA+SK E Y+       +    E  GI +  ++D+PGH +SW    P+L P
Sbjct:   48 IWPAPFYGQFGNNSILISKEFNFTIISDSTLLLN--KTLSKYYNLIFTQD-NLINSSS--NTLNK----------LNINLKSKNEILKFGFDESYKLIIKNNEN------SKLEGNTVYGIMRGLETFYQLIKYNFSDNSYFIENCLPLIINDKPRFPHRGVMLDTSRHFYSVDTILKVIESLSYNKFNTLHWHIIDSQSFPLSSKSYPNLINGAWSKSEIYSYHDIKRIIKYGKE-NGIRIQLEIDMPGHAKSWSVGYPDLLP 289          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXA1_DICDI (Beta-hexosaminidase subunit A1 OS=Dictyostelium discoideum GN=hexa1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.912e-30
Identity = 68/186 (36.56%), Postives = 112/186 (60.22%), Query Frame = 1
Query:  523 LKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLWKGAYSKWERYTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWGT**PNL 1080
            L + ++SD+E LQLG+DESY+L + +       G   ++A  +YGA+RGLETF QL  ++    S  +      I D PR+ +RG ++D++RHY+P ++I  +I+S+ ++K N LH H++D  +FP+E  TYP+L KGA+S    ++      ++    +  GI +  + D+PGH  +WG   P L
Sbjct:   84 LSVTIYSDDETLQLGIDESYSLSIEQ-------GSYQLKATNIYGAMRGLETFKQLIVYNELENSYSIVCVS--ISDSPRYPWRGFMVDSARHYIPKNMILHMIDSLGFSKFNTLHWHMVDAVAFPVESTTYPDLTKGAFSPSATFSHDDIQ-EVVAYAKTYGIRVIPEFDIPGHAAAWGIGYPEL 259          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXA2_DICDI (Beta-hexosaminidase subunit A2 OS=Dictyostelium discoideum GN=hexa2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.702e-28
Identity = 81/224 (36.16%), Postives = 120/224 (53.57%), Query Frame = 1
Query:  409 AFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLWKGAYSKWERYTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWGT**PNL 1080
            +  RY+++ F           V NN  K  S   +   L +++ SD+E L+LG+DESY LLV ++          I+ANT+YGA+RGLETF Q+  +D    S  +  A   + D P + +RGLL+D +RH+LP +++  II+SM Y K N +H H+ID  +FP+E  TYP L +         T      ++    +  GI +  + DVPGH  SWG   P L
Sbjct:   66 SISRYQSLFFPF---------VSNNVLKDSSSNIE---LSLIIASDDETLELGIDESYFLLVNQDT-------YQIKANTIYGAMRGLETFKQMVVYDVVENSYSLTCAE--VVDYPTYQWRGLLVDNARHFLPKNMVLHIIDSMGYNKFNTMHWHLIDTVAFPVESKTYPKLTEALLGPGAIITHDDIL-EVVAYAKTYGIRVIPEFDVPGHSASWGVGYPEL 267          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXB_HUMAN (Beta-hexosaminidase subunit beta OS=Homo sapiens GN=HEXB PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.103e-27
Identity = 77/166 (46.39%), Postives = 102/166 (61.45%), Query Frame = 1
Query:  571 DESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLW-KGAYSKWERYTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWG 1062
            DESYTLLV +         A ++AN V+GALRGLETFSQL   D Y T ++        I D PRF+ RG+LIDTSRHYLPV +I + +++M++ K NVLH HI+D+QSFP + +T+P L  KG+YS    YT       +  +    GI +  + D PGH  SWG
Sbjct:  146 DESYTLLVKEPV-------AVLKANRVWGALRGLETFSQLVYQDSYGTFTINEST----IIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYA-RLRGIRVLPEFDTPGHTLSWG 299          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXB_RAT (Beta-hexosaminidase subunit beta OS=Rattus norvegicus GN=Hexb PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.882e-27
Identity = 78/166 (46.99%), Postives = 101/166 (60.84%), Query Frame = 1
Query:  571 DESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLW-KGAYSKWERYTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWG 1062
            DESY+LLV +   L       ++AN V+GALRGLETFSQL   D Y T ++        I D PRF  RG+LIDTSRHYLPV  I + +++M++ K NVLH HI+D+QSFP + +T+P L  KG+YS    YT       L  +    GI +  + D PGH QSWG
Sbjct:  124 DESYSLLVQEPVAL-------LKANEVWGALRGLETFSQLVYQDAYGTFTINEST----IADSPRFPHRGILIDTSRHYLPVKTIFKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDIHMVLEYA-RLRGIRVIPEFDSPGHTQSWG 277          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXB_MOUSE (Beta-hexosaminidase subunit beta OS=Mus musculus GN=Hexb PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 5.476e-27
Identity = 78/182 (42.86%), Postives = 106/182 (58.24%), Query Frame = 1
Query:  523 LKIVVHSDNEDL-QLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLW-KGAYSKWERYTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWG 1062
            + I + S+ E    L  DE+Y+LLV +         A ++AN+V+GALRGLETFSQL   D      +   +   I D PRF  RG+LIDTSRH+LPV  I + +++M++ K NVLH HI+D+QSFP +  T+P L  KG+YS    YT       L  +    GI +  + D PGH QSWG
Sbjct:  108 VSITLESECESFPSLSSDETYSLLVQEPV-------AVLKANSVWGALRGLETFSQLVYQDSFGTFTINESS---IADSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLHWHIVDDQSFPYQSTTFPELSNKGSYSLSHVYTPNDVRMVLEYA-RLRGIRVIPEFDTPGHTQSWG 278          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXB_FELCA (Beta-hexosaminidase subunit beta OS=Felis catus GN=HEXB PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.220e-26
Identity = 92/228 (40.35%), Postives = 124/228 (54.39%), Query Frame = 1
Query:  406 EAFERYKAIIFEHEVEGVNSHSVFNNFRKRR----SWGFDIGTLKIVVHSDNE-DL--QLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLW-KGAYSKWERYTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWG 1062
            EAF RY   IF  +             R+RR    +   ++  L + V  D+E DL   +  DESYTLLV +         A ++AN V+G LRGLETFSQL   D Y T +V        I D PRF  RG+LIDT+RH+LPV  I + +++M++ K NVLH HI+D+QSFP + +T+P L  KG+YS    YT       +  +    GI +  + D PGH QSWG
Sbjct:   70 EAFRRYHEYIFGFDK------------RQRRPAKPNSAIELQQLLVTVVLDSECDLFPNITSDESYTLLVKEPV-------AFLKANRVWGVLRGLETFSQLIYQDSYGTFTVNESD----IIDSPRFPHRGILIDTARHFLPVKSILKTLDAMAFNKFNVLHWHIVDDQSFPYQSVTFPELSNKGSYSLSHVYTPNDVHTVIEYA-RLRGIRVIPEFDSPGHTQSWG 273          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXA_RAT (Beta-hexosaminidase subunit alpha OS=Rattus norvegicus GN=Hexa PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.055e-26
Identity = 82/227 (36.12%), Postives = 120/227 (52.86%), Query Frame = 1
Query:  406 EAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLW-KGAYSKWER-YTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWGT**PNL 1080
            EAF RY++++F     G  S    +  +K++  G +I  + +V    NE   L   E+YTL +  ++ L       + + TV+GALRGLETFSQL    + +     +     I D PRF  RG+L+DTSRHYLP+  I   ++ M+Y K NV H H++D+ SFP E  T+P L  KG+++     YT       +  +    GI + A+ D PGH  SWG   P L
Sbjct:   63 EAFRRYRSLLF-----GSGSWPRPSFSKKQQPLGKNILMVSVVTAECNEFPNLESVENYTLTINDDQCL-------LSSETVWGALRGLETFSQLV---WKSAEGTFFINKTKITDFPRFPHRGILLDTSRHYLPLSSILNTLDVMAYNKFNVFHWHLVDDSSFPYESFTFPELTRKGSFNPVTHIYTAQDVKEVIEYA-RLRGIRVLAEFDTPGHTLSWGAGVPGL 273          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXA_MOUSE (Beta-hexosaminidase subunit alpha OS=Mus musculus GN=Hexa PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.908e-26
Identity = 83/227 (36.56%), Postives = 121/227 (53.30%), Query Frame = 1
Query:  406 EAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLW-KGAYSKWER-YTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWGT**PNL 1080
            EAF RY+ ++F     G      F+N  K+++ G +I  + +V    NE   L   E+YTL +  ++ L       + + TV+GALRGLETFSQL    + +     +     I+D PRF  RG+L+DTSRHYLP+  I   ++ M+Y K NV H H++D+ SFP E  T+P L  KG+++     YT       +  +    GI + A+ D PGH  SWG   P L
Sbjct:   63 EAFRRYRNLLFG---SGSWPRPSFSN--KQQTLGKNILVVSVVTAECNEFPNLESVENYTLTINDDQCL-------LASETVWGALRGLETFSQLV---WKSAEGTFFINKTKIKDFPRFPHRGVLLDTSRHYLPLSSILDTLDVMAYNKFNVFHWHLVDDSSFPYESFTFPELTRKGSFNPVTHIYTAQDVKEVIEYA-RLRGIRVLAEFDTPGHTLSWGPGAPGL 273          
The following BLAST results are available for this feature:
BLAST of DY262465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
HEXB2_DICDI2.991e-4135.85Beta-hexosaminidase subunit B2 OS=Dictyostelium di... [more]
HEXB1_DICDI6.896e-3837.88Beta-hexosaminidase subunit B1 OS=Dictyostelium di... [more]
HEXA1_DICDI6.912e-3036.56Beta-hexosaminidase subunit A1 OS=Dictyostelium di... [more]
HEXA2_DICDI1.702e-2836.16Beta-hexosaminidase subunit A2 OS=Dictyostelium di... [more]
HEXB_HUMAN1.103e-2746.39Beta-hexosaminidase subunit beta OS=Homo sapiens G... [more]
HEXB_RAT1.882e-2746.99Beta-hexosaminidase subunit beta OS=Rattus norvegi... [more]
HEXB_MOUSE5.476e-2742.86Beta-hexosaminidase subunit beta OS=Mus musculus G... [more]
HEXB_FELCA1.220e-2640.35Beta-hexosaminidase subunit beta OS=Felis catus GN... [more]
HEXA_RAT6.055e-2636.12Beta-hexosaminidase subunit alpha OS=Rattus norveg... [more]
HEXA_MOUSE7.908e-2636.56Beta-hexosaminidase subunit alpha OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AC02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262465 ID=DY262465; Name=DY262465; organism=Citrus clementina; type=EST; length=1278bp
ACCGCCATTACGGCTAAAAGAACAGCTTAAAAGAGTAAAAACTGTAACTA
CTTTTTGTCCTGTCTTTATGAGTTCATTCACCTGACTAACTGGTATCTCT
CCTCCACTTTCGCTTCGCTGCAGCTGTTCATCAGATCACTTTGGTTTTCC
AAAGGAATCTCCGTAAACCAAACCACAATGTTGCTCAAATCCCAAGAACA
TCTCTCAGTTCTCAAAGTTATAATCATCACCGCACTTCTCATCATTTTCA
CTTCCTCCCTTTCTGTCTCCACCGACGTGGACGATTCCCTCGCTTACATC
TGGCCTTTGCCAGCGCAATTCACTTCCGGTAACGACACGCTCTCCGTTGA
CCCAGCTCTTTATCTCTCCGTTTCGGGAAAAGGGTCGGGCTCGAAGATTG
TTAAAGAAGCGTTCGAGAGATACAAAGCTATTATTTTCGAGCACGAAGTC
GAAGGGGTTAATTCCCATTCTGTGTTTAATAATTTTAGAAAGAGGAGATC
GTGGGGTTTTGATATTGGAACATTGAAGATTGTTGTTCATTCGGATAATG
AAGACTTGCAGCTTGGTGTTGATGAGAGTTACACTTTGTTGGTGGCTAAG
AATGAGGGGCTGTCAATTATTGGAGAGGCAACAATAGAGGCAAATACAGT
TTATGGTGCTCTGCGAGGATTGGAGACATTCAGCCAATTGTGTTCTTTTG
ACTATGATACTAAATCCGTACTAGTATATAAAGCACCGTGGTACATCCAA
GACAAACCAAGATTTGCATTTCGTGGCCTTCTGATTGATACATCAAGGCA
CTATTTACCAGTAGATGTCATTAAGCAGATAATTGAATCTATGTCATATG
CAAAACTTAATGTCCTTCATTGNCATATCATAGACGAGCAGTCATTTCCT
CTTGAAGTGCTTACATATCCAAATTTGTGGAAGGGCGCATATTCAAAGTG
GGAGCGCTACACGGGTTGAGGATGCCCATGAAAATTGTCGGTTTCGCCAG
AATGAGAAGGCATCATGTTATGGGCGAAATTAGATGTTCCTGGTCATTGC
CAATCATGGGGAACTTGATAACCTAACCTTTGGCCTTTTTCCATCTTGTA
AAAGACCCCTTGGATGTTTCCAAAAATTTTTATTTTTAAAATGATTTTCC
GGCTTTCTTACCAAATTTTAAAAAAATTTTTTCCCCTTTTGAACCTGTTT
TTCCCTTGGGGGGGGGGGAAAAGGAGGGAAAAAACCGGGAGTGGGGCGGG
GAACCCCCTTCCTTCCCCCACGGTTGAG
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