DY262542

Overview
NameDY262542
Unique NameDY262542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1084
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262542_ssr162 microsatellite DY262542_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262542 vs. ExPASy Swiss-Prot
Match: ADT1_ARATH (ADP,ATP carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=ANT1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.321e-23
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 2
Query:  608 AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQLVLF 826
            AGLASYPIDTVRRRMMMTSGEAVKYKSSL AF++I+KNEG KSLFKGAGANILR          YDKLQL++F
Sbjct:  300 AGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQILKNEGAKSLFKGAGANILRAVAGAGVLSGYDKLQLIVF 372          
BLAST of DY262542 vs. ExPASy Swiss-Prot
Match: ADT2_SOLTU (ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.907e-22
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  608 AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQLVLF 826
            AGLASYPIDTVRRRMMMTSGEAVKYKSS  AF +I+KNEG KSLFKGAGAN+LR          YDKLQ+++F
Sbjct:  305 AGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFNQILKNEGPKSLFKGAGANVLRAVAGAGVLAGYDKLQVIVF 377          
BLAST of DY262542 vs. ExPASy Swiss-Prot
Match: ADT2_ARATH (ADP,ATP carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=ANT2 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.907e-22
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 2
Query:  608 AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQLVLF 826
            AGLASYPIDTVRRRMMMTSGEAVKYKSS  AF +I+K EG KSLFKGAGANILR          YDKLQL++F
Sbjct:  304 AGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFSQIVKKEGAKSLFKGAGANILRAVAGAGVLAGYDKLQLIVF 376          
BLAST of DY262542 vs. ExPASy Swiss-Prot
Match: ADT1_WHEAT (ADP,ATP carrier protein 1, mitochondrial OS=Triticum aestivum GN=ANT-G1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.491e-22
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  608 AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQLVLF 826
            AGLASYPIDTVRRRMMMTSGEAVKYKSSL AFQ+I+K EG KSLFKGAGANILR          YD+LQ++ F
Sbjct:  250 AGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFQQILKKEGAKSLFKGAGANILRAIAGAGVLSGYDQLQILFF 322          
BLAST of DY262542 vs. ExPASy Swiss-Prot
Match: ADT_ORYSJ (ADP,ATP carrier protein, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0718900 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.253e-22
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  608 AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQLVLF 826
            AGLASYPIDTVRRRMMMTSGEAVKYKSS+ AF +I+KNEG KSLFKGAGANILR          YD+LQ++ F
Sbjct:  301 AGLASYPIDTVRRRMMMTSGEAVKYKSSMDAFSQILKNEGAKSLFKGAGANILRAIAGAGVLSGYDQLQILFF 373          
BLAST of DY262542 vs. ExPASy Swiss-Prot
Match: ADT2_MAIZE (ADP,ATP carrier protein 2, mitochondrial OS=Zea mays GN=ANT2 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 3.253e-22
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  608 AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQLVLF 826
            AGLASYPIDTVRRRMMMTSGEAVKYKSSL AFQ+I+K EG KSLFKGAGANILR          YD+LQ++ F
Sbjct:  306 AGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFQQILKKEGPKSLFKGAGANILRAIAGAGVLSGYDQLQILFF 378          
BLAST of DY262542 vs. ExPASy Swiss-Prot
Match: ADT1_SOLTU (ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.253e-22
Identity = 54/72 (75.00%), Postives = 59/72 (81.94%), Query Frame = 2
Query:  608 AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQLVL 823
            AGLASYPIDTVRRRMMMTSGEAVKYKSSL AF +I+KNEG KSLFKGAGANILR          YDKLQ+++
Sbjct:  305 AGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGPKSLFKGAGANILRAVAGAGVLAGYDKLQVLV 376          
BLAST of DY262542 vs. ExPASy Swiss-Prot
Match: ADT1_MAIZE (ADP,ATP carrier protein 1, mitochondrial OS=Zea mays GN=ANT1 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 3.253e-22
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  608 AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQLVLF 826
            AGLASYPIDTVRRRMMMTSGEAVKYKSSL AFQ+I+K EG KSLFKGAGANILR          YD+LQ++ F
Sbjct:  306 AGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFQQILKKEGPKSLFKGAGANILRAIAGAGVLSGYDQLQILFF 378          
BLAST of DY262542 vs. ExPASy Swiss-Prot
Match: ADT_CHLRE (ADP,ATP carrier protein OS=Chlamydomonas reinhardtii GN=ABT PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.249e-22
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 2
Query:  608 AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQLVL 823
            AGLASYPIDT+RRRMMMTSG AVKY SS H FQEI+KNEG KSLFKGAGANILR          YD+LQ++L
Sbjct:  227 AGLASYPIDTIRRRMMMTSGSAVKYNSSFHCFQEIVKNEGMKSLFKGAGANILRAVAGAGVLAGYDQLQVIL 298          
BLAST of DY262542 vs. ExPASy Swiss-Prot
Match: ADT1_GOSHI (ADP,ATP carrier protein 1, mitochondrial OS=Gossypium hirsutum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.465e-22
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  608 AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQLVLF 826
            A LASYPIDTVRRRMMMTSG+AVKYKSSL AF +I+KNEG KSLFKGAG+NILR          YDKLQL++F
Sbjct:  305 AALASYPIDTVRRRMMMTSGKAVKYKSSLDAFSQILKNEGGKSLFKGAGSNILRAIAGAGVLAGYDKLQLIVF 377          
The following BLAST results are available for this feature:
BLAST of DY262542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
ADT1_ARATH1.321e-2376.71ADP,ATP carrier protein 1, mitochondrial OS=Arabid... [more]
ADT2_SOLTU1.907e-2272.60ADP,ATP carrier protein, mitochondrial (Fragment) ... [more]
ADT2_ARATH1.907e-2273.97ADP,ATP carrier protein 2, mitochondrial OS=Arabid... [more]
ADT1_WHEAT2.491e-2273.97ADP,ATP carrier protein 1, mitochondrial OS=Tritic... [more]
ADT_ORYSJ3.253e-2272.60ADP,ATP carrier protein, mitochondrial OS=Oryza sa... [more]
ADT2_MAIZE3.253e-2273.97ADP,ATP carrier protein 2, mitochondrial OS=Zea ma... [more]
ADT1_SOLTU3.253e-2275.00ADP,ATP carrier protein, mitochondrial OS=Solanum ... [more]
ADT1_MAIZE3.253e-2273.97ADP,ATP carrier protein 1, mitochondrial OS=Zea ma... [more]
ADT_CHLRE4.249e-2272.22ADP,ATP carrier protein OS=Chlamydomonas reinhardt... [more]
ADT1_GOSHI9.465e-2272.60ADP,ATP carrier protein 1, mitochondrial OS=Gossyp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100BB01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262542 ID=DY262542; Name=DY262542; organism=Citrus clementina; type=EST; length=1084bp
TGAACTAATAAAACAAAACCAAAAACGCAAAATCCCATCCTCTTCTTTCC
TTTTACTCTCCAAATCCTCACTGCTAGTTACACTTCGAATTCCAATCCTG
CCCTTCCTCCAAACCCAAATTCACATGCAAGCCCTTATGTCTCTGTAATA
TTTATTTATGGATTTATTTATTTTTTCCAATTCTCTTCTAAGCATTATTT
TTTAGGGTTTAATCTGGATTCTTTCTGTACTTGTAAAGCTAGCTTTAGTT
TTTTTTCTTATTATTGTATTTATAGCTTTTTATTTGCATTGAATTCATTC
CTCTCTTATGTAATAATGAAAGTGATCATAAAGTGAGCCAACGATTTAGA
TGATTTAGGGTTAGGGTTAGTGTCTTTTTTATATTTTATTGTAATTCAAT
GGAAATGGAGAATCCGCGTAGACCGTTTGATAGATCGAGAGAACACGGTC
TGGTGAAAAAACCGCGATTAACTGAGGATCCGACTCGGCCATTTACTCAG
AGATCAGCTTTAGCAGCTGCAGCTCCGAGATATAACAGTGCAACTAGAGA
CTCTGACGTGGAGGAGCGAGGCGGTGGCGCGTATCAGCCACAGCAACCGC
ACCATGAGCTGGTTTGGCTTCTTACCCAATTGATACGGTGCGTAGAAGGA
TGATGATGACCTCTGGAGAAGCTGTGAAGTACAAGAGCTCTTTGCATGCA
TTCCAGGAAATTATAAAGAATGAAGGCACTAAATCACTCTTCAAAGGTGC
TGGTGCAAACATTCTGCGTGCTGTGGCAGGTGCTGGTGTGCTTGCCGGTT
ATGACAAGCTGCAGCTGGTTCTATTTGGCAAGAAATACGGATCCGGTGGT
GGCGGTTATACTTGTACAAGATGTTGGTGAAAATCTATAGGTGCTCTTCT
CNAGTTTGAATATTTTTGGATGATCGATAGGTGTATAATAATTATCCGGT
TTTTAGGGATTTGATAAAGAAAAGATATAGTCGTCAAAGAACTGTTTGAT
TTTGAGTGTTTTTGTGCTGGACCATAAAACTCATTGTTGGAAAATAAATA
AAATAGTTTTCACTTAAATTATTATCTGCTGGGG
back to top