DY262543

Overview
NameDY262543
Unique NameDY262543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1296
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262543_ssr54 microsatellite DY262543_ssr54:54..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262543 vs. ExPASy Swiss-Prot
Match: GT3_ARATH (Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1)

HSP 1 Score: 433.335 bits (1113), Expect = 1.474e-120
Identity = 215/351 (61.25%), Postives = 262/351 (74.64%), Query Frame = 3
Query:  126 QDNFTPLKRSSTGA-AAGGVLPTTNAASAANGRTGRGAMPRGRQIQKTFNNIKITILCGFVTILVLRGTIGVNFSSPDEETINQQLIEEANRVLAEIRXXXXXXXXXXXXXXXTNPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDKELSGYWAKLPLLRKLMLSHPEIEWIWWMDSDAMFTDMVFELPMDKYKDYNLVVHGYHDLMFIRSHGL-LEYGEVLVRDCQWSLDLLDAWAHMDRRGD-RKQAGKIWTLI*K-ETAFEVDDPSALNYLWLTQKENGMEKGLLKRSSFCRGYW 1166
            +D F   KR ST + AA GVLPTT A+        R   PRGRQIQKTFNN+K+TILCGFVTILVLRGTIG+NF + D + +NQ +IEE NR+LAEIR                + N TY+LGPKI++WD  RK WL+ N +FPS ++GK K+LL+TGS PKPCDNPIGDHYLLKSVKNKIDYCR+HGIEI+YNMAHLDKEL+GYWAKLP++R+LMLSHPEIEWIWWMDSDA+FTDMVFE+P+ +Y+++NLV+HGY DL+F +   + L  G  L R+CQWSLDLLDAWA M  +G  R++AGKI T   K   AFE DD SAL YL L+QKE  MEK  ++   +  G+W
Sbjct:    4 EDGFRTQKRVSTASSAAAGVLPTTMASGGV-----RRPPPRGRQIQKTFNNVKMTILCGFVTILVLRGTIGINFGTSDADVVNQNIIEETNRLLAEIRSDSDPTDSNEPPDSDLDLNMTYTLGPKITNWDQKRKLWLTQNPDFPSFINGKAKVLLLTGSPPKPCDNPIGDHYLLKSVKNKIDYCRIHGIEIVYNMAHLDKELAGYWAKLPMIRRLMLSHPEIEWIWWMDSDALFTDMVFEIPLSRYENHNLVIHGYPDLLFDQKSWIALNTGSFLFRNCQWSLDLLDAWAPMGPKGPIREEAGKILTANLKGRPAFEADDQSALIYLLLSQKETWMEKVFVENQYYLHGFW 349          
BLAST of DY262543 vs. ExPASy Swiss-Prot
Match: GT5_ARATH (Putative glycosyltransferase 5 OS=Arabidopsis thaliana GN=GT5 PE=2 SV=1)

HSP 1 Score: 431.024 bits (1107), Expect = 7.316e-120
Identity = 218/354 (61.58%), Postives = 261/354 (73.73%), Query Frame = 3
Query:  120 MGQDNFTPLKRSSTGAAAGGVLPTTNAASAANGRTGRGAM-PRGRQIQKTFNNIKITILCGFVTILVLRGTIGV-NFSSPDEETINQQLIEEANRVLAEIRXXXXXXXXXXXXXXXTNPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDKELSGYWAKLPLLRKLMLSHPEIEWIWWMDSDAMFTDMVFELPMDKYKDYNLVVHGYHDLMFIRSHGL-LEYGEVLVRDCQWSLDLLDAWAHMDRRGD-RKQAGKIWTLI*K-ETAFEVDDPSALNYLWLTQKENGMEKGLLKRSSFCRGYW 1166
            MGQD     KR S    +GG LPTT   +   GR GRG + PRGRQ+QKTFNNIKITILCGFVTILVLRGTIGV N  S   + +NQ +IEE NR+LAEIR                NPNATY LGPKI+ WD  RK WL+ N EFPS V+GK +ILL+TGS PKPCDNPIGDHYLLKSVKNKIDYCRLHGIEI+YNMAHLDKEL+GYWAKLP++R+LMLSHPE+EWIWWMDSDA+FTD++F++P+ +Y+ +NLV+HGY DL+F +   + L  G  L+R+CQWSLDLLDAWA M  +G  R +AGK+ T   K   AFE DD SAL YL L+QK+  MEK  ++   +  G+W
Sbjct:    1 MGQDGSPAHKRPS---GSGGGLPTTTLTNGG-GRGGRGGLLPRGRQMQKTFNNIKITILCGFVTILVLRGTIGVGNLGSSSADAVNQNIIEETNRILAEIRSDSDPTDLDEPQEGDMNPNATYVLGPKITDWDSQRKVWLNQNPEFPSTVNGKARILLLTGSPPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIVYNMAHLDKELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDALFTDILFQIPLARYQKHNLVIHGYPDLLFDQKSWIALNTGSFLLRNCQWSLDLLDAWAPMGPKGPIRDEAGKVLTAYLKGRPAFEADDQSALIYLLLSQKDTWMEKVFVENQYYLHGFW 350          
BLAST of DY262543 vs. ExPASy Swiss-Prot
Match: XT1_ARATH (Xyloglucan 6-xylosyltransferase OS=Arabidopsis thaliana GN=XT1 PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 3.430e-85
Identity = 168/341 (49.27%), Postives = 220/341 (64.52%), Query Frame = 3
Query:  243 RGRQIQKTFNNIKITILCGFVTILVLRGTIGVN-FSSPDE--ETINQQLIE-----EANRVLAEIRXXXXXXXXXXXXXXX--------------------TNPNATYSLGPKISSWDLDRKAWLSHNAEFPSHV-DGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDKELSGYWAKLPLLRKLMLSHPEIEWIWWMDSDAMFTDMVFELPMDKYKDYNLVVHGYHDLMFIRSHGL-LEYGEVLVRDCQWSLDLLDAWAHMDRRGD-RKQAGKIWTLI*KE-TAFEVDDPSALNYLWLTQKENGMEKGLLKRSSFCRGYWG 1169
            R R++Q+     K+TILC  +T++VLRGTIG   F +P++  E I +         E +RVL E+                                       N  YSLGPKIS WD  R+ WL  N  FP+ V   KP++LLVTGS PKPC+NP+GDHYLLKS+KNKIDYCR+HGIEI YNMA LD E++G+WAKLPL+RKL+LSHPEIE++WWMDSDAMFTDMVFELP ++YKDYNLV+HG++++++ + + + L  G  L+R+ QWSLDLLDAWA M  +G  R++AGK+ T   K+  AFE DD SA+ YL  T++E    K  L+   +  GYWG
Sbjct:   10 RFRRLQRFMRQGKVTILCLVLTVIVLRGTIGAGKFGTPEKDIEEIREHFFYTRKRGEPHRVLVEVSSKTTSSEDGGNGGNSYETFDINKLFVDEGDEEKSRDRTNKPYSLGPKISDWDEQRRDWLKQNPSFPNFVAPNKPRVLLVTGSAPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEIEFLWWMDSDAMFTDMVFELPWERYKDYNLVMHGWNEMVYDQKNWIGLNTGSFLLRNSQWSLDLLDAWAPMGPKGKIREEAGKVLTRELKDRPAFEADDQSAMVYLLATEREKWGGKVYLESGYYLHGYWG 350          
BLAST of DY262543 vs. ExPASy Swiss-Prot
Match: GT2_ARATH (Putative glycosyltransferase 2 OS=Arabidopsis thaliana GN=GT2 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 2.904e-84
Identity = 163/342 (47.66%), Postives = 220/342 (64.33%), Query Frame = 3
Query:  243 RGRQIQKTFNNIKITILCGFVTILVLRGTIGVN-FSSPDEET------INQQLIEEANRVLAEIRXXXXXXXXXXXXXXX----------------------TNPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVD-GKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDKELSGYWAKLPLLRKLMLSHPEIEWIWWMDSDAMFTDMVFELPMDKYKDYNLVVHGYHDLMFIRSHGL-LEYGEVLVRDCQWSLDLLDAWAHMDRRGD-RKQAGKIWTLI*KE-TAFEVDDPSALNYLWLTQKENGMEKGLLKRSSFCRGYWG 1169
            R R+IQ+    +K+TILC  +T++VLR TIG   F +P+++        + +   E +RVL EI+                                      +PN  Y+LGPKIS WD  R  WL+ N  FP+ +   KP++LLVTGS PKPC+NP+GDHYLLKS+KNKIDYCRLHGIEI YNMA LD E++G+WAKLPL+RKL+LSHPEIE++WWMDSDAMFTDM FELP ++YKDYNLV+HG++++++ + + + L  G  L+R+ QW+LDLLD WA M  +G  R++AGK+ T   K+   FE DD SA+ YL  TQ++    K  L+   +  GYWG
Sbjct:   10 RCRRIQRALRQLKVTILCLLLTVVVLRSTIGAGKFGTPEQDLDEIRQHFHARKRGEPHRVLEEIQTGGDSSSGDGGGNSGGSNNYETFDINKIFVDEGEEEKPDPNKPYTLGPKISDWDEQRSDWLAKNPSFPNFIGPNKPRVLLVTGSAPKPCENPVGDHYLLKSIKNKIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEIEFLWWMDSDAMFTDMAFELPWERYKDYNLVMHGWNEMVYDQKNWIGLNTGSFLLRNNQWALDLLDTWAPMGPKGKIREEAGKVLTRELKDRPVFEADDQSAMVYLLATQRDAWGNKVYLESGYYLHGYWG 351          
BLAST of DY262543 vs. ExPASy Swiss-Prot
Match: GT4_ARATH (Putative glycosyltransferase 4 OS=Arabidopsis thaliana GN=GT4 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 3.792e-84
Identity = 147/237 (62.03%), Postives = 188/237 (79.32%), Query Frame = 3
Query:  465 NPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDKELSGYWAKLPLLRKLMLSHPEIEWIWWMDSDAMFTDMVFELPMDKYKDYNLVVHGYHDLMF-IRSHGLLEYGEVLVRDCQWSLDLLDAWAHMDRRGD-RKQAGKIWTLI*K-ETAFEVDDPSALNYLWLTQKENGMEKGLLKRSSFCRGYW 1166
            +PNATY+LGPKI++WD  RK WL+ N EFP+ V+GK +ILL+TGS+P PCD PIG++YLLK+VKNKIDYCRLHGIEI+YNMA+LD+ELSGYW KLP++R LMLSHPE+EWIWWMDSDA+FTD++FE+P+ +Y+++NLV+HGY DL+F  +S   L  G  L+R+CQWSLDLLDAWA M  +G  R + GKI T   K   AFE DD SAL YL L+QKE  +EK  ++   +  G+W
Sbjct:  172 SPNATYTLGPKITNWDSQRKVWLNQNPEFPNIVNGKARILLLTGSSPGPCDKPIGNYYLLKAVKNKIDYCRLHGIEIVYNMANLDEELSGYWTKLPMIRTLMLSHPEVEWIWWMDSDALFTDILFEIPLPRYENHNLVIHGYPDLLFNQKSWVALNTGIFLLRNCQWSLDLLDAWAPMGPKGKIRDETGKILTAYLKGRPAFEADDQSALIYLLLSQKEKWIEKVYVENQYYLHGFW 408          
BLAST of DY262543 vs. ExPASy Swiss-Prot
Match: GMGT1_CYATE (Galactomannan galactosyltransferase 1 OS=Cyamopsis tetragonoloba GN=GMGT1 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 4.831e-55
Identity = 109/241 (45.23%), Postives = 152/241 (63.07%), Query Frame = 3
Query:  465 NPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDKELSGYWAKLPLLRKLMLSHPEIEWIWWMDSDAMFTDMVFELPMDKYKDYNLVVHGYHDLMFI-RSHGLLEYGEVLVRDCQWSLDLLDAWAHMDRRGDRKQAGKIWTLI*KET-----AFEVDDPSALNYLWLT-QKENGMEKGLLKRSSFCRGYW 1166
            +P  +Y++   + +WD  RK WL H+  F +    + KILLVTGS PK C NPIGDH LL+  KNK+DYCRLH  +IIYN A L  +++ YWAK P++R  M++HPE+EW+WW+DSDA+FTDM F+LP+ +YK++NLVVHG+  L+ +  S   L  G  L+R+CQWSL+ +D W  M   G +    + W    +ET       + DD +AL YL  T  K+   EK  L+   +  GYW
Sbjct:   84 DPETSYTMDKPMKNWDEKRKEWLLHHPSFGAAA--RDKILLVTGSQPKRCHNPIGDHLLLRFFKNKVDYCRLHNYDIIYNNALLHPKMNSYWAKYPVIRAAMMAHPEVEWVWWVDSDAVFTDMEFKLPLKRYKNHNLVVHGWEGLVRLNHSWTGLNAGVFLIRNCQWSLEFMDVWVSM---GPQTPEYEKWGERLRETFKDKVLPDSDDQTALAYLIATDNKDTWREKIFLESEYYFEGYW 319          
BLAST of DY262543 vs. ExPASy Swiss-Prot
Match: GT6_ARATH (Glycosyltransferase 6 OS=Arabidopsis thaliana GN=GT6 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.007e-52
Identity = 107/241 (44.40%), Postives = 151/241 (62.66%), Query Frame = 3
Query:  465 NPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDGKP----KILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDKELSGYWAKLPLLRKLMLSHPEIEWIWWMDSDAMFTDMVFELPMDKYKDYNLVVHGYHDLMFIR-SHGLLEYGEVLVRDCQWSLDLLDAWAHMDR-RGDRKQAGKIWTLI*KETAF-EVDDPSALNYLWLTQKENGMEKGLLKRSSFCRGYW 1166
            +P+ +YS+   I+ WD  R  W      F SH   KP    +I++VTGS   PC NPIGDH LL+  KNK+DY R+HG +I Y+ + L  +++ YWAKLP+++  ML+HPE EWIWW+DSDA+FTDM F+ P+ +Y+ +NLVVHG+ ++++ + S   L  G  L+R+CQWS+DL+D W  M     D K+ G I   I K+  F E DD +AL YL    KE    K  L+   + +GYW
Sbjct:   72 DPDLSYSIEKPITKWDEKRNQW------FESHPSFKPGSENRIVMVTGSQSSPCKNPIGDHLLLRCFKNKVDYARIHGHDIFYSNSLLHPKMNSYWAKLPVVKAAMLAHPEAEWIWWVDSDAIFTDMEFKPPLHRYRQHNLVVHGWPNIIYEKQSWTALNAGVFLIRNCQWSMDLIDTWKSMGPVSPDYKKWGPIQRSIFKDKLFPESDDQTALIYLLYKHKELYYPKIYLEAEYYLQGYW 306          
BLAST of DY262543 vs. ExPASy Swiss-Prot
Match: GT7_ARATH (Putative glycosyltransferase 7 OS=Arabidopsis thaliana GN=GT7 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.232e-51
Identity = 103/238 (43.28%), Postives = 151/238 (63.45%), Query Frame = 3
Query:  465 NPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDG-KPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDKELSGYWAKLPLLRKLMLSHPEIEWIWWMDSDAMFTDMVFELPMDKYKDYNLVVHGYHDLMF-IRSHGLLEYGEVLVRDCQWSLDLLDAWAHMDR-RGDRKQAGKIWTLI*KETAF-EVDDPSALNYLWLTQKENGMEKGLLKRSSFCRGYW 1166
            +P+ TY++   + +WD  R+ WL+ +   PS + G + + ++VTGS   PC NPIGDH LL+  KNK+DYCR+HG +I Y+ A L  +++ YWAKLP ++  M++HPE EWIWW+DSDA+FTDM F  P  +YK++NLVVHG+  +++  RS   L  G  L+R+CQWS++L+D W  M     +  + G+I   I K+  F E DD +AL YL    +E    K  L+   +  GYW
Sbjct:   89 DPDLTYTIEKPVKNWDEKRRRWLNLH---PSFIPGAENRTVMVTGSQSAPCKNPIGDHLLLRFFKNKVDYCRIHGHDIFYSNALLHPKMNSYWAKLPAVKAAMIAHPEAEWIWWVDSDALFTDMDFTPPWRRYKEHNLVVHGWPGVIYNDRSWTALNAGVFLIRNCQWSMELIDTWTGMGPVSPEYAKWGQIQRSIFKDKLFPESDDQTALLYLLYKHREVYYPKIYLEGDFYFEGYW 323          
The following BLAST results are available for this feature:
BLAST of DY262543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GT3_ARATH1.474e-12061.25Putative glycosyltransferase 3 OS=Arabidopsis thal... [more]
GT5_ARATH7.316e-12061.58Putative glycosyltransferase 5 OS=Arabidopsis thal... [more]
XT1_ARATH3.430e-8549.27Xyloglucan 6-xylosyltransferase OS=Arabidopsis tha... [more]
GT2_ARATH2.904e-8447.66Putative glycosyltransferase 2 OS=Arabidopsis thal... [more]
GT4_ARATH3.792e-8462.03Putative glycosyltransferase 4 OS=Arabidopsis thal... [more]
GMGT1_CYATE4.831e-5545.23Galactomannan galactosyltransferase 1 OS=Cyamopsis... [more]
GT6_ARATH1.007e-5244.40Glycosyltransferase 6 OS=Arabidopsis thaliana GN=G... [more]
GT7_ARATH4.232e-5143.28Putative glycosyltransferase 7 OS=Arabidopsis thal... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100BB02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262543 ID=DY262543; Name=DY262543; organism=Citrus clementina; type=EST; length=1296bp
TTCGAAAAACCACGTATAACTTAAAAGAGTCACTCCATGAACTCCGGATA
ACGGAAAGAAAGAAAAAGAAACTAAAAACTAAATTATAATTAATTATATA
TATCTCTCTGAGATTGCACATGGGGCAAGACAATTTCACGCCTCTGAAGA
GATCCTCAACGGGCGCTGCAGCAGGCGGCGTTCTTCCCACCACCAACGCA
GCCTCCGCCGCCAACGGCAGGACCGGACGTGGAGCCATGCCGCGTGGCAG
GCAGATCCAGAAGACCTTCAACAACATCAAGATCACCATCCTCTGTGGCT
TCGTTACCATTCTCGTCCTACGTGGCACCATCGGTGTCAACTTCAGCAGC
CCCGACGAAGAAACCATCAACCAGCAGCTCATCGAGGAGGCCAACCGTGT
CCTCGCCGAGATCCGCTCCGACGTCGACCCGGACGATCCGGATGAACCCT
CCGACTCGGAGACCAACCCCAATGCCACTTACTCTCTGGGTCCCAAAATA
TCCTCCTGGGACCTGGATCGTAAGGCTTGGCTGAGTCATAACGCTGAGTT
TCCGAGCCATGTTGACGGTAAGCCTAAGATTTTGCTCGTTACCGGCTCCA
CTCCTAAGCCTTGTGATAATCCAATTGGCGATCATTACTTGCTGAAATCT
GTTAAGAATAAGATTGACTATTGTAGGCTTCATGGGATTGAGATTATTTA
TAATATGGCTCATTTAGATAAGGAGTTATCTGGGTACTGGGCGAAATTGC
CTTTGCTAAGGAAATTGATGTTGTCTCATCCTGAGATTGAATGGATTTGG
TGGATGGATAGTGATGCTATGTTTACCGATATGGTGTTTGAGCTTCCTAT
GGACAAGTATAAGGATTATAATTTGGTGGTTCATGGGTACCACGATTTGA
TGTTTATCAGAAGTCATGGATTGCTTGAATACGGGGAAGTTCTTGTTAGG
GATTGTCAGTGGTCGTTGGATTTACTTGATGCTTGGGCGCATATGGACCG
AAGGGGTGATAGAAAACAGGCTGGAAAAATATGGACGCTTATTTGAAAGG
AAACCGCTTTTGAAGTTGATGATCCGTCGGCTCTAAATTATTTGTGGTTA
ACCCAAAAGGAAAATGGGATGGAAAAAGGTTTATTGAAAAGGAGTTCCTT
TTGCCGGGGGTATTGGGGTTGGGTGGGTTTAAAGAGTATAAGAGGAAAAA
GGGGGAAAAAATATCCCCCCCGGGGGTAAAGGGAAGAAAGAGGGGGCCCC
TTTTTGGGCCCCCTTTTTTTTGTTGGTGGGGACCCCCCCTCTTCCC
back to top