DY262545

Overview
NameDY262545
Unique NameDY262545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1300
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262545_ssr179 microsatellite DY262545_ssr179:179..188. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262545_ssr52 microsatellite DY262545_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262545 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 9.966e-101
Identity = 192/304 (63.16%), Postives = 225/304 (74.01%), Query Frame = 3
Query:  273 THHYPMGFPANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVXMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPFSLRW-QRETHWNWDFTTPGV*AQ*D-LEIYRST*TP--LHLKILL*KTRKGDCCPRTNNELEAVKLKTEFLNFCPFEKSLPQKVFKPKTK 1169
            TH       +NG+    KP LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRV MPISSDL+NPRNFITKI+RY KVVNIPNSMT+LDELLP S+   +R     W+FT PGV +  + LE+YR    P        L +  K    PR+NNE++A KLK EF      ++SL +  + P  K
Sbjct:  367 THMVVPSQRSNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKK 668          
BLAST of DY262545 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 1.302e-100
Identity = 189/322 (58.70%), Postives = 233/322 (72.36%), Query Frame = 3
Query:  216 LTDPNSNRNPIQSHLSFAFTHHYPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVXMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPFSLRW-QRETHWNWDFTTPGV*AQ*D-LEIYRST*TP--LHLKILL*KTRKGDCCPRTNNELEAVKLKTEFLNFCPFEKSLPQKVFKPKTK 1169
            L+D +S +  + S+    FT    +  P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRV MPISSDL+NPRNFITKI+RY KVV+IPNSMT+LDELLP S+   +R     W+FT PGV +  + LE+Y++   P        + +  K     R+NNE++  KL  EF      ++SL + VF+P  +
Sbjct:  349 LSDGSSEKKDVSSNTVQTFT----VVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKR 666          
BLAST of DY262545 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.700e-100
Identity = 185/292 (63.36%), Postives = 220/292 (75.34%), Query Frame = 3
Query:  306 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVXMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPFSLRW-QRETHWNWDFTTPGV*AQ*D-LEIYRST*TP--LHLKILL*KTRKGDCCPRTNNELEAVKLKTEFLNFCPFEKSLPQKVFKPKTK 1169
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRV MPISSDL+NPRNFITKI+RY KVVNIPNSMTILDELLP S+   +R     W+FT PGV +  + LE+Y+S   P        L +  K    PR+NNE++  KL  EF      + SL + VF+P  +
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKR 663          
BLAST of DY262545 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.792e-33
Identity = 82/220 (37.27%), Postives = 125/220 (56.82%), Query Frame = 3
Query:  330 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPN---VDWCESHK--VETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVXMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPFSLRWQR-ETHWNWDFTTPGV 968
            +K+LI+G  GWIG ++ K+ + Q         R ++ +++E +I+ +KP  V +  G T  P    +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS  K   + L+  F+N V  LR+ MPI+ +  NPR+FITKI  Y ++ +IPNSMTILD+++P  +   R +T   ++FT PG+
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGL 218          
The following BLAST results are available for this feature:
BLAST of DY262545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM1_ARATH9.966e-10163.16Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM2_ARATH1.302e-10058.70Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM3_ARATH1.700e-10063.36Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
YL780_MIMIV1.792e-3337.27Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100BB04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262545 ID=DY262545; Name=DY262545; organism=Citrus clementina; type=EST; length=1300bp
CCCCTCCAAAATTTAAAGATAAAAAACCTGAAAATATTTTTTTACAAGAA
AAAAATAAAATAAAATGAATTTCTGATATGATATCAGTATCAGGTTACTT
GTGTATATAAATTTACATAAATAAAATACCACACACACTTTCAGCTTCTT
ACATGAATTGAAAGCTGAAAGCCACCCAACACACACACATAGATTCCAAT
CAATAGTACGAAATTCTAACAGATCCAAATTCAAATCGAAATCCGATCCA
GTCTCATCTCTCCTTTGCATTCACTCACCATTACCCAATGGGTTTCCCAG
CCAACGGCTCCGACGCCGGCTCCAAGCCGCTCAAGTTTCTCATCTACGGC
CGCACTGGCTGGATCGGGGGCTTGCTCGGCAAGCTCTGCCAAGCTCAGTC
CATTGACTTCACCTACGGCTCCGGCCGCCTCGAGAACCGCGCCTCCCTCG
AAGCCGACATCGCCGCCGTCAAGCCCACCCACGTCTTCAACGCGGCCGGG
GTGACCGGTAGGCCTAACGTCGACTGGTGCGAATCGCATAAGGTCGAGAC
CATACGGACTAATGTCGTCGGCACCCTTACGCTTGCTGACGTCTGCAGAG
ACAAAGGTTTGATTCTCATTAATTACGCCACCGGCTGCATCTTCGAGTAC
GATTCCGGTCACCCCCTCGGATCCGGCATCGGCTTCAAGGAGGAGGATAC
TCCGAATTTTGTCGGATCTTTCTACTCCAAGACTAAGGCCATGGTGGAAG
AGTTGCTCAAGAATTTTGAGAATGTCTGTACTTTGCGTGTCANGATGCCG
ATCTCATCAGATTTATCCAATCCTCGCAACTTCATCACAAAGATCACTCG
ATATGAAAAGGTAGTCAACATTCCAAACTCAATGACTATCTTGGATGAGC
TTCTTCCATTTTCATTGAGATGGCAAAGAGAAACTCACTGGAATTGGGAC
TTTACGACCCCCGGTGTGTGAGCACAATGAGATCTGGAGATTTATCGCAG
TACATAAACCCCACTTCACTTGAAAATTTTACTTTGAAAAACAAGGAAAG
GTGATTGTTGCCCAAGGACCAACAACGAACTTGAAGCCGTTAAATTAAAA
ACGGAATTCCTGAACTTTTGTCCCTTTGAGAAATCCCTCCCCCAAAAAGT
TTTTAAACCCAAAACAAAAAACCCCGGGAAGGGGGAAACCCTTTTAAGGT
TTTAGAGGTTTTTTATTTTCCCCATATTATTTAAAATTTTGTGTTTCCCC
CGGGGGGGAAGAGGGATATCCCCAAAGGTTATTTTTTTTCCCCTCCCCCC
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