DY262546
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY262546 vs. ExPASy Swiss-Prot
Match: GCP4_MOUSE (Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 1.360e-36 Identity = 100/335 (29.85%), Postives = 157/335 (46.87%), Query Frame = 1 Query: 4 KHLWTVAVEEAQLMHELRLLKDFYXXXXXXXXXXXXXXTAHKLDKPTTRTSTRDMNHAFQLAARAVFLSSHPDIEKFSFDLPY---------VKPNLXXXXXXXXXXXXXXXXXXIILKYNFKWPLHLLFTPEVLARYNDMFRLLLRIKKTQHDLHALWKTHKQSSSFQMCQ-------LHSKLMFLVDNLQHYLQADVLETNFARLTEQLANTKDFERLKAAHANFLDDVTTQSFLTVNPNTEPESSGDALDCLSNPVLANIMSLVQLCDSFCSLTSTD------------DYXLTGYSDRFDRLVQQLTSLLAGLRRGAPPPRLLVRLDYNRW 924 +HLW + VEE+ L+ +L+++KDFY H L P T + D+N AFQ +A V L + + Y +P + L Y +WPLH+LFTP VL +YN +F+ LL +++ Q +L W Q + Q L + + FLVDNLQ+YLQ DVLE+ F++L Q+ +T+DFE ++ AH +FL ++ QSF+ + P CL+ ++ LC SFCSL S + + G+S R L+ ++ S + + + +LL+RLDYN++ Sbjct: 338 EHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKDHKADATQPREVPSRETSPREAPSSGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAVKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKP---------VFHCLN--------EILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFS-RQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKY 654
BLAST of DY262546 vs. ExPASy Swiss-Prot
Match: GCP4_HUMAN (Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 1.151e-35 Identity = 99/335 (29.55%), Postives = 156/335 (46.57%), Query Frame = 1 Query: 4 KHLWTVAVEEAQLMHELRLLKDFYXXXXXXXXXXXXXXTAHKLDKPTTRTSTRDMNHAFQLAARAVFLSSHPDIEKFSFDLPY---------VKPNLXXXXXXXXXXXXXXXXXXIILKYNFKWPLHLLFTPEVLARYNDMFRLLLRIKKTQHDLHALWKTHKQSSSFQMCQ-------LHSKLMFLVDNLQHYLQADVLETNFARLTEQLANTKDFERLKAAHANFLDDVTTQSFLTVNPNTEPESSGDALDCLSNPVLANIMSLVQLCDSFCSLTSTD------------DYXLTGYSDRFDRLVQQLTSLLAGLRRGAPPPRLLVRLDYNRW 924 +HLW + VEE+ L+ +L+++KDFY H L P T + D+N AFQ +A V L + + Y + + L Y +WPLH+LFTP VL +YN +F+ LL +++ Q +L W Q + Q L + + FLVDNLQ+YLQ DVLE+ F++L Q+ +T+DFE ++ AH +FL ++ QSF+ + P CL+ ++ LC SFCSL S + + G+S R L+ ++ S + + + +LL+RLDYN++ Sbjct: 338 EHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKADATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKP---------VFHCLN--------EILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFS-RQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKY 654
BLAST of DY262546 vs. ExPASy Swiss-Prot
Match: GCP4_DROME (Gamma-tubulin complex component 4 homolog OS=Drosophila melanogaster GN=Grip75 PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 3.712e-26 Identity = 88/321 (27.41%), Postives = 151/321 (47.04%), Query Frame = 1 Query: 19 VAVEEAQLMHELRLLKDFYXXXXXXXXXXXXXXTAHKLDKPTTRTST-RDMNHAFQLAARAVFLSSHPDIEKFSFDLPYVKPNLXXXXXXXXXXXXXXXXXXIILKYNFKWPLHLLFTPEVLARYNDMFRLLLRIKKTQHDLHALW--KTHKQSS------SFQMCQLHSKLMFLVDNLQHYLQADVLETNFARLTEQLANTKDFERLKAAHANFLDDVTTQSFLTVNPNTEPESSGDALDCLSNPVLANIMSLVQLCDSFCSLTSTDDYXLTGYSDRFDRL-------VQQLTSLLAGLRRGA---PPPRLLVRLDYNRW 924 +AV E L ++ L+KDF+ ++ T R +++ +F+LAA ++ D++KFS + LKY ++WPL+LLF+P + RYN++FR LL I+ Q+++ +W +T + S + ++ L + LMF ++N+Q+Y+Q DVLE+ F L + + DFE ++ AH FL +V + FL T+ +G NP+ ++ L +C+ F +T T D D D+L + L LL ++ + P +LL+RLD+N W Sbjct: 336 IAVNEVDLERQMGLIKDFFLLGRGEFYLEFCSQMVGTME--TYREERFKNVTRSFELAATVTGITD--DLDKFSLICQ-------RSTSEPDDTSDFNFLQGLSLKYEYEWPLNLLFSPTTIERYNNIFRFLLIIRTYQYEIQRVWAKQTWRAKSAKDVPPNNKIITLRNYLMFFLNNMQYYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLANVLSHCFLLNESETQLNVTGSQ---NRNPIYGTLLKLFGICEKFAHMTQTKD-PSDDLEDEVDQLNESFGVQIASLIQLLVDVKSASCLGPLSQLLLRLDFNCW 641
BLAST of DY262546 vs. ExPASy Swiss-Prot
Match: GCP4_MEDTR (Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.784e-20 Identity = 95/371 (25.61%), Postives = 153/371 (41.24%), Query Frame = 1 Query: 7 HLWTVAVEEAQLMHELRLLKDFYXXXXXXXXXXXXXXTAHKLDKPTTR-TSTRDMNHAFQLAARAVFLSSHPDIEKFSFDLPY----VKPNLXXXXXXXXXXXXXXXXXXI---------------ILKYNFKWPLHLLFTPEVLARYNDMFRLLLRIKKTQHDLHALWKT--HKQSSSF----------------------QMCQLHSKLMFLVDNLQHYLQADVLETNFARLTEQLANTKDFERLKAAHANFLDDVTTQSFLTVNPNTEPESSGDALDCLSNPVLANIMSLVQLCDSFC-SLTSTDDYXLTG----YSDRFDRLVQQL-----TSLLAGLRRGAPPPRLLVRLDYNRWLXHRAQLTRSV 957 HLW + V A L L+ LKD++ + + P + T+ D+ FQLA+ K S +P VKP+L I L+Y+ +WPLHL FT EVL+RY +F+ LLR+K+TQ +L LW + H+ S F M ++ + FL+ NLQ Y+Q DV+E+ + L + ++ DF L H +L + +Q+FL + S LD +++LC FC ++ + D++ T ++ F++ L +S LAG +R R L+RL+ N + A+ +V Sbjct: 373 HLWQLVVVRADLNGHLKALKDYFLLAKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLASLKTIGEEDKYFSKVSLRMPSYGITVKPSLLNVPKATSAAADGISGASISNASSEMSVDGWDGIALEYSIEWPLHLFFTQEVLSRYLKVFQYLLRLKRTQMELEKLWASVMHQYHSIFAKNKKSDQDKSPITQQRDQRFRSMWRVREHMAFLIRNLQFYIQVDVIESQWNILQSHIQDSHDFTELVGFHQEYLSALISQTFLDIG------SVSRILD-----------GIMKLCLQFCWNIENQDNFSNTSELEHIAEEFNKKSNSLYTILRSSRLAGSQRTPFLRRFLLRLNLNSFFESTAKEVMNV 726
BLAST of DY262546 vs. ExPASy Swiss-Prot
Match: GCP4_ARATH (Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana GN=At3g53760 PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 1.083e-17 Identity = 84/351 (23.93%), Postives = 141/351 (40.17%), Query Frame = 1 Query: 7 HLWTVAVEEAQLMHELRLLKDFYXXXXXXXXXXXXXXTAHKLDKPTTR-TSTRDMNHAFQLAARAVFLSSHPDIEKFSFDLPYVKPNLXXXXXXXXXXXXXXXXXX-------------IILKYNFKWPLHLLFTPEVLARYNDMFRLLLRIKKTQHDLHALW-----KTHKQSSSFQ------------------MCQLHSKLMFLVDNLQHYLQADVLETNFARLTEQLANTKDFERLKAAHANFLDDVTTQSFLTVNPNTEPESSGDALDCLSNPVLANIMSLVQLCDSFC-----SLTSTDDYXLTGYSDRFDRLVQQL-----TSLLAGLRRGAPPPRLLVRLDYN 918 HLW + V A L L+ LKD++ + + P + T D+ FQLAA + S +P + I L+Y+ WP+ L FT EVL++Y +F+ L+R+K+TQ +L W + H +S+ + M ++ + FL+ NLQ Y+Q DV+E+ + L + +++DF L H +L + +QSFL + S LD S+++LC FC ++ + L ++ F++ L +S LAG +R R L+RL++N Sbjct: 390 HLWQLVVVRADLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTGESDLMVPFQLAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVSLTGKANLTSDTSVDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQMELEKSWASVMHQDHIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQVDVIESQWKVLQTHIHDSQDFTELVGFHQEYLSALISQSFLDIG------SVSRILD-----------SIMKLCLQFCWNIENQESNPNTSELENIAEEFNKKSNSLYTILRSSKLAGSQRAPFLRRFLLRLNFN 723 The following BLAST results are available for this feature:
BLAST of DY262546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262546 ID=DY262546; Name=DY262546; organism=Citrus clementina; type=EST; length=1321bpback to top |