DY262546

Overview
NameDY262546
Unique NameDY262546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1321
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2325 contig Ccv1_Contig2325:1..1321. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262546 vs. ExPASy Swiss-Prot
Match: GCP4_MOUSE (Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.360e-36
Identity = 100/335 (29.85%), Postives = 157/335 (46.87%), Query Frame = 1
Query:    4 KHLWTVAVEEAQLMHELRLLKDFYXXXXXXXXXXXXXXTAHKLDKPTTRTSTRDMNHAFQLAARAVFLSSHPDIEKFSFDLPY---------VKPNLXXXXXXXXXXXXXXXXXXIILKYNFKWPLHLLFTPEVLARYNDMFRLLLRIKKTQHDLHALWKTHKQSSSFQMCQ-------LHSKLMFLVDNLQHYLQADVLETNFARLTEQLANTKDFERLKAAHANFLDDVTTQSFLTVNPNTEPESSGDALDCLSNPVLANIMSLVQLCDSFCSLTSTD------------DYXLTGYSDRFDRLVQQLTSLLAGLRRGAPPPRLLVRLDYNRW 924
            +HLW + VEE+ L+ +L+++KDFY                H L  P T  +  D+N AFQ +A  V L     +      + Y          +P                    + L Y  +WPLH+LFTP VL +YN +F+ LL +++ Q +L   W    Q    +  Q       L + + FLVDNLQ+YLQ DVLE+ F++L  Q+ +T+DFE ++ AH +FL ++  QSF+ + P            CL+         ++ LC SFCSL S +               + G+S R   L+ ++ S +   +  +   +LL+RLDYN++
Sbjct:  338 EHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKDHKADATQPREVPSRETSPREAPSSGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAVKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKP---------VFHCLN--------EILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFS-RQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKY 654          
BLAST of DY262546 vs. ExPASy Swiss-Prot
Match: GCP4_HUMAN (Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.151e-35
Identity = 99/335 (29.55%), Postives = 156/335 (46.57%), Query Frame = 1
Query:    4 KHLWTVAVEEAQLMHELRLLKDFYXXXXXXXXXXXXXXTAHKLDKPTTRTSTRDMNHAFQLAARAVFLSSHPDIEKFSFDLPY---------VKPNLXXXXXXXXXXXXXXXXXXIILKYNFKWPLHLLFTPEVLARYNDMFRLLLRIKKTQHDLHALWKTHKQSSSFQMCQ-------LHSKLMFLVDNLQHYLQADVLETNFARLTEQLANTKDFERLKAAHANFLDDVTTQSFLTVNPNTEPESSGDALDCLSNPVLANIMSLVQLCDSFCSLTSTD------------DYXLTGYSDRFDRLVQQLTSLLAGLRRGAPPPRLLVRLDYNRW 924
            +HLW + VEE+ L+ +L+++KDFY                H L  P T  +  D+N AFQ +A  V L     +      + Y          +                     + L Y  +WPLH+LFTP VL +YN +F+ LL +++ Q +L   W    Q    +  Q       L + + FLVDNLQ+YLQ DVLE+ F++L  Q+ +T+DFE ++ AH +FL ++  QSF+ + P            CL+         ++ LC SFCSL S +               + G+S R   L+ ++ S +   +  +   +LL+RLDYN++
Sbjct:  338 EHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKADATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKP---------VFHCLN--------EILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFS-RQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKY 654          
BLAST of DY262546 vs. ExPASy Swiss-Prot
Match: GCP4_DROME (Gamma-tubulin complex component 4 homolog OS=Drosophila melanogaster GN=Grip75 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 3.712e-26
Identity = 88/321 (27.41%), Postives = 151/321 (47.04%), Query Frame = 1
Query:   19 VAVEEAQLMHELRLLKDFYXXXXXXXXXXXXXXTAHKLDKPTTRTST-RDMNHAFQLAARAVFLSSHPDIEKFSFDLPYVKPNLXXXXXXXXXXXXXXXXXXIILKYNFKWPLHLLFTPEVLARYNDMFRLLLRIKKTQHDLHALW--KTHKQSS------SFQMCQLHSKLMFLVDNLQHYLQADVLETNFARLTEQLANTKDFERLKAAHANFLDDVTTQSFLTVNPNTEPESSGDALDCLSNPVLANIMSLVQLCDSFCSLTSTDDYXLTGYSDRFDRL-------VQQLTSLLAGLRRGA---PPPRLLVRLDYNRW 924
            +AV E  L  ++ L+KDF+                  ++  T R    +++  +F+LAA    ++   D++KFS                            + LKY ++WPL+LLF+P  + RYN++FR LL I+  Q+++  +W  +T +  S      + ++  L + LMF ++N+Q+Y+Q DVLE+ F  L   + +  DFE ++ AH  FL +V +  FL     T+   +G       NP+   ++ L  +C+ F  +T T D       D  D+L       +  L  LL  ++  +   P  +LL+RLD+N W
Sbjct:  336 IAVNEVDLERQMGLIKDFFLLGRGEFYLEFCSQMVGTME--TYREERFKNVTRSFELAATVTGITD--DLDKFSLICQ-------RSTSEPDDTSDFNFLQGLSLKYEYEWPLNLLFSPTTIERYNNIFRFLLIIRTYQYEIQRVWAKQTWRAKSAKDVPPNNKIITLRNYLMFFLNNMQYYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLANVLSHCFLLNESETQLNVTGSQ---NRNPIYGTLLKLFGICEKFAHMTQTKD-PSDDLEDEVDQLNESFGVQIASLIQLLVDVKSASCLGPLSQLLLRLDFNCW 641          
BLAST of DY262546 vs. ExPASy Swiss-Prot
Match: GCP4_MEDTR (Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.784e-20
Identity = 95/371 (25.61%), Postives = 153/371 (41.24%), Query Frame = 1
Query:    7 HLWTVAVEEAQLMHELRLLKDFYXXXXXXXXXXXXXXTAHKLDKPTTR-TSTRDMNHAFQLAARAVFLSSHPDIEKFSFDLPY----VKPNLXXXXXXXXXXXXXXXXXXI---------------ILKYNFKWPLHLLFTPEVLARYNDMFRLLLRIKKTQHDLHALWKT--HKQSSSF----------------------QMCQLHSKLMFLVDNLQHYLQADVLETNFARLTEQLANTKDFERLKAAHANFLDDVTTQSFLTVNPNTEPESSGDALDCLSNPVLANIMSLVQLCDSFC-SLTSTDDYXLTG----YSDRFDRLVQQL-----TSLLAGLRRGAPPPRLLVRLDYNRWLXHRAQLTRSV 957
            HLW + V  A L   L+ LKD++              +   +  P  + T+  D+   FQLA+            K S  +P     VKP+L                  I                L+Y+ +WPLHL FT EVL+RY  +F+ LLR+K+TQ +L  LW +  H+  S F                       M ++   + FL+ NLQ Y+Q DV+E+ +  L   + ++ DF  L   H  +L  + +Q+FL +       S    LD            +++LC  FC ++ + D++  T      ++ F++    L     +S LAG +R     R L+RL+ N +    A+   +V
Sbjct:  373 HLWQLVVVRADLNGHLKALKDYFLLAKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLASLKTIGEEDKYFSKVSLRMPSYGITVKPSLLNVPKATSAAADGISGASISNASSEMSVDGWDGIALEYSIEWPLHLFFTQEVLSRYLKVFQYLLRLKRTQMELEKLWASVMHQYHSIFAKNKKSDQDKSPITQQRDQRFRSMWRVREHMAFLIRNLQFYIQVDVIESQWNILQSHIQDSHDFTELVGFHQEYLSALISQTFLDIG------SVSRILD-----------GIMKLCLQFCWNIENQDNFSNTSELEHIAEEFNKKSNSLYTILRSSRLAGSQRTPFLRRFLLRLNLNSFFESTAKEVMNV 726          
BLAST of DY262546 vs. ExPASy Swiss-Prot
Match: GCP4_ARATH (Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana GN=At3g53760 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.083e-17
Identity = 84/351 (23.93%), Postives = 141/351 (40.17%), Query Frame = 1
Query:    7 HLWTVAVEEAQLMHELRLLKDFYXXXXXXXXXXXXXXTAHKLDKPTTR-TSTRDMNHAFQLAARAVFLSSHPDIEKFSFDLPYVKPNLXXXXXXXXXXXXXXXXXX-------------IILKYNFKWPLHLLFTPEVLARYNDMFRLLLRIKKTQHDLHALW-----KTHKQSSSFQ------------------MCQLHSKLMFLVDNLQHYLQADVLETNFARLTEQLANTKDFERLKAAHANFLDDVTTQSFLTVNPNTEPESSGDALDCLSNPVLANIMSLVQLCDSFC-----SLTSTDDYXLTGYSDRFDRLVQQL-----TSLLAGLRRGAPPPRLLVRLDYN 918
            HLW + V  A L   L+ LKD++              +   +  P  + T   D+   FQLAA            + S  +P     +                               I L+Y+  WP+ L FT EVL++Y  +F+ L+R+K+TQ +L   W     + H +S+  +                  M ++   + FL+ NLQ Y+Q DV+E+ +  L   + +++DF  L   H  +L  + +QSFL +       S    LD           S+++LC  FC       ++ +   L   ++ F++    L     +S LAG +R     R L+RL++N
Sbjct:  390 HLWQLVVVRADLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTGESDLMVPFQLAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVSLTGKANLTSDTSVDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQMELEKSWASVMHQDHIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQVDVIESQWKVLQTHIHDSQDFTELVGFHQEYLSALISQSFLDIG------SVSRILD-----------SIMKLCLQFCWNIENQESNPNTSELENIAEEFNKKSNSLYTILRSSKLAGSQRAPFLRRFLLRLNFN 723          
The following BLAST results are available for this feature:
BLAST of DY262546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GCP4_MOUSE1.360e-3629.85Gamma-tubulin complex component 4 OS=Mus musculus ... [more]
GCP4_HUMAN1.151e-3529.55Gamma-tubulin complex component 4 OS=Homo sapiens ... [more]
GCP4_DROME3.712e-2627.41Gamma-tubulin complex component 4 homolog OS=Droso... [more]
GCP4_MEDTR1.784e-2025.61Gamma-tubulin complex component 4 homolog OS=Medic... [more]
GCP4_ARATH1.083e-1723.93Gamma-tubulin complex component 4 homolog OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100BB05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262546 ID=DY262546; Name=DY262546; organism=Citrus clementina; type=EST; length=1321bp
ACAAAGCACCTGTGGACGGTGGCGGTGGAGGAGGCCCAGCTCATGCATGA
ACTGCGGCTGCTCAAGGACTTCTACCTCCTCGGCCGCGGGGAACTGTTCC
TAGAGCTACTGAGGCTCACCGCACATAAACTGGACAAGCCGACTACCAGG
ACTTCTACTAGAGACATGAACCACGCGTTCCAGCTGGCGGCCCGCGCGGT
GTTCCTGAGCAGCCACCCCGACATTGAGAAGTTCAGCTTCGACCTGCCCT
ACGTCAAACCCAACCTGTCCGTCAACTCGGCCGACGACGACAGCAGTGCT
GTAAGCGACGGCTGGTCCAGCATAATCCTGAAGTACAACTTCAAGTGGCC
CTTGCACCTGTTGTTCACTCCGGAAGTGCTAGCTCGCTACAACGACATGT
TCCGTCTTCTTCTTCGTATTAAGAAAACTCAACACGACTTACACGCGCTA
TGGAAGACGCATAAACAGTCTAGCAGCTTCCAGATGTGTCAGTTGCACAG
CAAGCTGATGTTCTTGGTGGACAACCTTCAGCACTACTTGCAGGCCGACG
TCTTGGAGACCAACTTCGCGCGACTCACCGAACAACTCGCTAACACCAAG
GACTTTGAAAGGCTAAAGGCTGCGCACGCCAACTTCTTAGATGACGTCAC
CACACAGTCTTTTCTTACTGTTAATCCGAACACAGAGCCAGAAAGTTCAG
GCGACGCGCTAGATTGCCTGAGCAACCCGGTGCTGGCCAACATCATGTCC
CTAGTGCAGCTCTGCGACTCATTCTGCTCACTCACTTCCACCGACGACTA
TNACCTCACTGGATATTCTGACAGATTCGACCGCCTAGTGCAGCAGCTGA
CGTCACTCCTGGCGGGTCTGCGGCGCGGCGCCCCCCCTCCGCGGCTGCTC
GTCAGGCTAGACTACAACCGCTGGCTCANCCACAGGGCGCAGCTCACCCG
CTCCGTCACAATATGCTGAAATAAACTTAGACCACTTGCAAGAAAAATTA
CCCTCCAGTTACGTTGACCATGAAGGCCCTGTTTTGTGGGTTTAATGAAT
AACATTTAATGGGGTTTTATAAAAATGGCGAAAAAAACCCAAAAAAAAAG
CTAAATTGGCTTTAAAAAAAAAAAAACTTGCCAAAATAGGTGTTAGGGGC
AGGTTTGGACTTGAACCACAAAAGTAAAAAAGGGGGGGGGGGCCCAAAGG
GGCCCCAATAAAAAGGAAATTTAAAAAACCAAAACTTTTTTTTTTTTTCT
TCCTCTCTTTTTTTTTTTTTCCTTTTTTTTATAAAACCCTTTTTTTTCCC
CCCTCGCCCCCCCCCCCCGAA
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