DY262553

Overview
NameDY262553
Unique NameDY262553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1263
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262553 vs. ExPASy Swiss-Prot
Match: COBL7_ARATH (COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2)

HSP 1 Score: 399.438 bits (1025), Expect = 2.276e-110
Identity = 197/361 (54.57%), Postives = 253/361 (70.08%), Query Frame = 3
Query:  111 ILFTTLPFTISQSXXXXXXXXXXX----NTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCEKRPTIFDLPPTRLMTHPWA-GPFRCRNGNNLPPSRESSKPTFGFSFGGLQKAPLIGKKSKPHPPPKREKYTGTLHP 1178
            +L  ++P T SQS               + CNGVF+SYT+  GSK+PP++  +Q YRFES +TVLN+G ++LK WR FV F H EILVSASNAVL DG+S P SV NGTVFAG+P SDLK+A+ TAGD+TQMQ +V++VGTQFGV   +VP+PKNI+LA DG+ C   T++G + L VCC  D +  +   +D+ FLPR+ GDLTIMYDV R+Y SNY AQVT+ NHNP+GRLDNWKLS+DWM DEFIYTMKGAYP + DSSDC+ GPQ  +Y+DLDF+NVL+C +RPT+ DLPPT+     +   PF CRNG  LP S + SK +  F     +  P +   +    PP+  +  GTL+P
Sbjct:   16 LLIVSIPLTSSQSDANTTNPSPSPPSDSDLCNGVFVSYTHTKGSKIPPNDTANQPYRFESVITVLNHGRDELKSWRVFVKFAHREILVSASNAVLSDGSSLPVSVENGTVFAGYPSSDLKSAIQTAGDVTQMQARVELVGTQFGVAPPNVPLPKNITLATDGWKCPKATQKGTNVLQVCCIPDPDYDNREIIDNEFLPRKDGDLTIMYDVVRSYSSNYMAQVTMENHNPLGRLDNWKLSFDWMRDEFIYTMKGAYPSIVDSSDCVDGPQAKHYQDLDFSNVLSCARRPTVIDLPPTKYNDSTFGLIPFCCRNGTILPRSMDPSKSSSVFQMQVYKMPPDLNISAL--SPPQNWRINGTLNP 374          
BLAST of DY262553 vs. ExPASy Swiss-Prot
Match: COBL8_ARATH (COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 4.157e-104
Identity = 192/362 (53.04%), Postives = 248/362 (68.51%), Query Frame = 3
Query:   96 WVSIFILFTTLPFTISQSXXXXXXXXXXXNTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCEKRPTIFDLPPTRLM-THPWAGPFRCRNGNNLPPSRESSKPTFGFSFGGLQKAPLIGKKSKPHPPPKREKYTGTLHP 1178
            W+ +  LFT +  T SQ            + CNGVF+SYTY +G+K+ P++ K+Q YRFES +TVLNNG ++LK W+ FV F H EILVSA+NAVL DG+S PASV NGT+FAGFP +DLKTA+MTAGD+TQM+ +V++VGTQFGV    VP+PKNI+L NDG+ C   T+QG + L VCCT + N  ++  +   FLPRQ GDLTIMYDVTR Y S+Y AQVT+ NHN +GRLDNW LS+ WM DEF+++ KGAYP + DSSDCI GPQ  YY+DLDF+NV++C +RP I DLP T+   T+    P+ CRNG  LP S +  K    F     +  P +   S    PP+  +  G L+P
Sbjct:   10 WILLSSLFTAIQLTSSQRNTPPPRSKDA-DLCNGVFVSYTYLTGTKIKPNDTKNQPYRFESEITVLNNGRDELKSWQVFVKFAHREILVSATNAVLSDGSSLPASVENGTIFAGFPSADLKTAIMTAGDVTQMEARVELVGTQFGVAPPSVPLPKNITLVNDGWSCPKPTQQGSNVLQVCCTPNPNITTS-KIGQKFLPRQEGDLTIMYDVTRAYQSSYSAQVTIENHNLLGRLDNWDLSFMWMKDEFLFSTKGAYPSVVDSSDCITGPQAKYYKDLDFSNVMSCARRPHIIDLPLTKYNDTNVGRIPYCCRNGTILPRSMDPEKSKSVFQIEVYKMPPDLNISS--ITPPQSWQIKGNLNP 367          
BLAST of DY262553 vs. ExPASy Swiss-Prot
Match: COBL9_ARATH (COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 8.112e-100
Identity = 183/365 (50.14%), Postives = 237/365 (64.93%), Query Frame = 3
Query:  105 IFILFTTLPFTISQSXXXXXXXXXXX------NTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCEKRPTIFDLPPTRLMTHPWAG-PFRCRNGNNLPPSRESSKPTFGFSFGGLQKAPLIGKKSKPHPPPKREKYTGTLHP 1178
            + +LFT  P ++SQ                  + CNG+FLSY +  G K+PP++   Q YRFES LTVLNNG E+LK+WR FVGFQH EIL+SA++A++ +G   PA VGNGT+F G+P+SDLKTA+ TAGDL QM  ++++VGTQF V    VP+P NISL N+G+LC   T Q K EL  CC +DA+   N T+   FLPRQ GDLTIMYDV R YD NY  +VT+ NHNP+GRLD+W+LS+DWM DEFI  M+GAYP + D++ CI+GPQ   Y  LDFA+VL CE+RP I DLPPT+         P  CRNG  LP   + SK    F+    +  P   + +    PP+  +  GTL+P
Sbjct:   11 VLLLFTVTPPSMSQLPPTIMVPAPAPAPISPSDLCNGIFLSYDFILGRKIPPNDTADQPYRFESVLTVLNNGREELKEWRVFVGFQHNEILISATDALIVNGTELPALVGNGTIFGGYPVSDLKTAIQTAGDLKQMTAEIELVGTQFMVAPPAVPLPSNISLVNEGWLCPVPTLQSKRELTTCCIRDASIIVNTTITTKFLPRQPGDLTIMYDVIRAYDQNYLTEVTMENHNPLGRLDHWELSFDWMRDEFIQKMQGAYPTVVDATKCIFGPQSLIYTGLDFADVLTCERRPIIIDLPPTKKDDSTLGNIPSCCRNGTILPRIMDPSKSVSVFTMQVAKMPPDFNRSAL--FPPQNWRIKGTLNP 373          
BLAST of DY262553 vs. ExPASy Swiss-Prot
Match: CBL10_ARATH (COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.031e-78
Identity = 145/333 (43.54%), Postives = 207/333 (62.16%), Query Frame = 3
Query:  189 CNGVFLSYTYNSGSKLPPD--NPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCEKRPTIFDLPPTRLMTHPWAG-PFRCRNGNNLPPSRESSKPTFGFSFGGLQKAPLIGKKSKPHPPPKREKYTGTLHP 1178
            CNG+F+SY + S  +  P   N   Q++ F+ST  ++N G E+LK W+ F+GF+H+E++VSA+ A   DG+ +P    NGT F G P  DLKT++ TAGD TQ+   ++I GT FGV     PMP+ I L NDG+ C    R+G S +HVCC ++   K+   +   F PR+ GDL I+YDV +++DSNY AQVT+ N NP+GRLD W L+++WM  EFI TM+GAY +  D S+C+Y   G YY+DLDF+ V+NC+++P I DLPP +   +     PF C+NG  LPP  + SK    F     +  P + + +    PP+  K  G L+P
Sbjct:   58 CNGIFMSYNFGSREREYPHVKNVTAQSWAFKSTAMIVNAGREELKGWQMFIGFRHKELIVSATGATPMDGD-YPLDASNGTTFVGSPNMDLKTSIETAGDFTQISANIEITGTLFGVSKAVTPMPRTIKLTNDGWECPAAKRKGGS-MHVCCKRNPKIKNKIGLKTKFAPRRYGDLNIVYDVLQSFDSNYLAQVTIDNDNPLGRLDRWNLTFEWMRGEFINTMRGAYTHKKDPSECLYSKAGQYYKDLDFSQVMNCQRKPAISDLPPEKKEDNMTGKLPFCCKNGTLLPPIMDPSKSRSMFQLQVFKLPPDLNRTAL--YPPQHWKIDGVLNP 386          
BLAST of DY262553 vs. ExPASy Swiss-Prot
Match: CBL11_ARATH (COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 4.195e-72
Identity = 142/333 (42.64%), Postives = 200/333 (60.06%), Query Frame = 3
Query:  189 CNGVFLSYTYNSGSKLPP--DNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCEKRPTIFDLPPTRLMTHPWAG-PFRCRNGNNLPPSRESSKPTFGFSFGGLQKAPLIGKKSKPHPPPKREKYTGTLHP 1178
            CNGV++SY+     KL P   N   QA+ F+ST  ++N G+E++K W+ FVGF H EI+VSA+ AV  DG+ FP    NGT F G   +DLKT+++TAGD TQ+   ++I GT FG      PMPK+I L NDG+ C   T +G + + VCC ++   K+   V   F+PRQ GDL I+YDV + Y S+Y AQVT+ N +P+GRLD+W L+W+WM  EFI++M+GAY    ++ +C+    G +Y DLDF+ V NC+K+P I DLP  R   +     PF C+NG  LP   + SK    F     +  P   +      PP+  K  G ++P
Sbjct:   48 CNGVYMSYSSGGREKLYPRTTNATAQAWSFKSTAMIVNTGIEEVKGWQMFVGFHHREIIVSATGAVSSDGD-FPVDATNGTTFIGSQNTDLKTSILTAGDYTQISTNIEITGTVFGGKGTATPMPKSIKLTNDGWQCPAATSKGGT-MQVCCKRNPKFKAKEKVKTKFMPRQHGDLNIIYDVLQAYASSYMAQVTIDNTSPLGRLDHWNLTWEWMRGEFIHSMRGAYAAEKNTLECLSSKAGQFYGDLDFSQVANCQKKPIIKDLPAERKDDNVTGKLPFCCKNGTLLPTHMDPSKSKAIFQLQVYKVPP--DQNRTAFFPPRNWKIDGIVNP 376          
The following BLAST results are available for this feature:
BLAST of DY262553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
COBL7_ARATH2.276e-11054.57COBRA-like protein 7 OS=Arabidopsis thaliana GN=CO... [more]
COBL8_ARATH4.157e-10453.04COBRA-like protein 8 OS=Arabidopsis thaliana GN=CO... [more]
COBL9_ARATH8.112e-10050.14COBRA-like protein 9 OS=Arabidopsis thaliana GN=CO... [more]
CBL10_ARATH1.031e-7843.54COBRA-like protein 10 OS=Arabidopsis thaliana GN=C... [more]
CBL11_ARATH4.195e-7242.64COBRA-like protein 11 OS=Arabidopsis thaliana GN=C... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100BC01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262553 ID=DY262553; Name=DY262553; organism=Citrus clementina; type=EST; length=1263bp
CGCGTTTCCCTTTCCCACAGAGTCTCTACAAAGCCTACTTTCAAAATCCT
TTCGAACAAACAAAATAAAAAAACTCAAAAGCCATGAGTTTGAACTGGGT
TTCAATTTTCATCTTATTTACAACGCTGCCCTTTACGATCTCTCAATCAC
CAGCAACCCCAGAAGCGCCAGCACCGGCAGCCAACACCTGCAACGGCGTT
TTCTTATCGTACACCTACAACTCCGGATCGAAGCTCCCGCCCGACAACCC
GAAGCACCAAGCGTATCGGTTCGAGTCAACGCTGACTGTTCTGAACAACG
GGCTGGAACAGCTGAAGCAATGGAGGGCTTTTGTGGGGTTTCAGCACGAG
GAGATTTTGGTGTCTGCGTCGAACGCGGTGTTGTTTGATGGGAATAGCTT
CCCTGCTAGTGTGGGAAACGGGACCGTTTTTGCAGGGTTTCCGATGTCTG
ACTTGAAGACGGCGGTGATGACGGCGGGTGACTTGACTCAGATGCAGGTC
CAGGTTAAGATTGTGGGGACTCAGTTTGGTGTTGGGTTACGTGATGTGCC
CATGCCGAAGAATATTAGCCTTGCTAATGATGGGTTCTTGTGCTCTCCTG
TGACCAGGCAAGGTAAGAGTGAGCTGCACGTATGCTGCACGAAAGATGCA
AATGCTAAATCAAACTTCACTGTTGATGATAATTTCTTGCCACGCCAAAG
TGGTGATCTTACGATCATGTATGATGTGACTAGAACATATGACTCGAATT
ACTGGGCGCAGGTTACAGTTGCAAACCATAACCCCATTGGCCGTCTTGAT
AATTGGAAATTGAGCTGGGACTGGATGCATGATGAATTTATCTACACTAT
GAAAGGGGCTTACCCTTATCTTGCTGATTCATCCGACTGCATATATGGTC
CACAAGGTACATACTACAGGGACTTAGACTTTGCCAATGTGTTGAATTGC
GAAAAAAGGCCAACCATATTTGACCTGCCTCCTACAAGGCTAATGACCCA
CCCCTGGGCTGGTCCCTTTCGGTGTAGAAATGGGAATAACTTGCCCCCTT
CAAGGGAATCAAGCAAGCCGACTTTCGGTTTTTCGTTTGGCGGTCTTCAA
AAGGCCCCCCTGATCGGAAAAAAATCTAAACCTCACCCCCCTCCAAAAAG
GGAAAAATACACGGGAACCCTCCACCCCTAAAATTAAAGGGCCGCCCCCC
CCAGGGAGAGGGGAAAACCCCCGCCCCCTTTTCCCGGCACCCCCCAGTGG
GGGGGGCCCCCCG
back to top