DY262560

Overview
NameDY262560
Unique NameDY262560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262560_ssr219 microsatellite DY262560_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262560_ssr688 microsatellite DY262560_ssr688:688..720. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5672 contig Ccv1_Contig5672:309..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.004e-44
Identity = 113/258 (43.80%), Postives = 141/258 (54.65%), Query Frame = 1
Query:  157 YAKWFWWRIEQ----------TXXXXXXXXXXXXXXFVFAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV-DVERSNNGNGEPSVEIDIQNSQESLESGYSTD----------------SPPNFPTNVLFWGNENLVSSAGVCVHEGVXXXXXXXXXXXXXXXTEMNNSRRGAEM--LVIDIPVNSMSEHFSSLSPVEETKSPMTT 843
            YA+ FWWR+EQ                         FVFA  Q+  +   AGLD  IL+ I VV F   DFKDGLECAVCLS+L DG+KAR+LP+CNHGFHV+CIDMWFQSHSTCPLCRN V  VE + +G  E   +       ++ ESG+ST+                 P +FPTNVL WG++N V SAG+ V E                  + ++S R  E+  +V+DIP NS SE+ S     EE KSPM T
Sbjct:   45 YARLFWWRVEQHFNLNLIQSDDPGSTVIGRNPRRRRFVFAQSQEDPLH-NAGLDSKILQSIHVVVFKCTDFKDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHGGSEGLPQ------NQNFESGHSTNQHNPSQDQSFVHEFSTEPLSFPTNVLVWGDQNQVRSAGLVVTE---ESPSGNFAASYNDHQQESSSTRSQEVTAVVVDIPDNS-SENLSERIDEEEPKSPMFT 291          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.923e-37
Identity = 104/293 (35.49%), Postives = 133/293 (45.39%), Query Frame = 1
Query:   58 FNNTGSLEITGQIMXXXXXXXXXXXXXXXXXXXYAKWFWWRIEQ------------------TXXXXXXXXXXXXXXFVFAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV-DVERSNNGNGEP----SVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGNENLVSSAGVCVHEGVXXXXXXXXXXXXXXXTEMNNSRRGAEMLVIDIPVNSMSEHFSSLS--------PVEETKSPMTT 843
            F +  + E+T +I+                   YAK +WWRI+Q                  +              F+F PGQD       GL    L  +P+V F Q   KDGLEC++CLSEL  G+KARLLPKCNH FHVECIDMWFQSHSTCP+CRN V   E++++   E     +      N+     S  ST S P FPTNVL WG ++ VS+    V                      N + +  E +V+DI  +S   H  S S          EE KSPMTT
Sbjct:   12 FGDLSTEEVTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPPVVTRRQRRRFIFVPGQD--ALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAENAGTTNNNHDALSQLSTSS-PEFPTNVLVWGRQDQVSTGNTNV-------------GTQEDGAAGNGASQSQEAVVLDISDSSSRNHNVSSSSSSMRFIVEEEEAKSPMTT 288          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.818e-26
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  274 RAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGN--GEPSVEIDIQNSQESLESGYSTDSPPNFPTNVL 618
            R G+ P +LR IP+V FN +DFK  LEC VCLSEL DG+KAR+LP C+H FHVECID W QS+STCP+CR  V +++S      G      +  + Q S    +STD P N  T ++
Sbjct:   61 RVGIKPYVLRSIPIVDFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLKQSRTRPELGGRDKSFNQNHDQTSEHHEFSTDPPTNTDTAII 177          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 6.957e-25
Identity = 56/152 (36.84%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   46 DENGFNNTGSLEITGQIMXXXXXXXXXXXXXXXXXXXYAKWFWWRIEQTXXXXXXXXXXXXXXFVFAPGQDPAVTLRA--GLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 495
            ++N F+ + +  ++G+IM                   YA+W+  R  +               F  A     A ++ A  GLDP +++ +PV  F+ +  KD +ECAVCLSE E+ E  R+LP C H FHV+CIDMWF SHSTCPLCR+ V+
Sbjct:   14 EDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVE 165          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.403e-22
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFN-----------QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 498
            G+DP +LR +PV  ++           +++  DG+ECAVCL+ELEDGE+AR LP+C HGFH EC+DMW  SHSTCPLCR  V V
Sbjct:   98 GVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 181          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.950e-20
Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  277 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLE 570
            +GLD   +  +P   F+  +  K GLEC+VCLS+ ED E  RLLPKC H FH+ CID W + H+TCPLCRN V++E   +  G  S  + I N  E+ E
Sbjct:   97 SGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQSETRE 195          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 5.704e-19
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  256 DPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 495
            DP+ T   GL+P+I++ +P+  F+       +EC+VCLSE +D E  R++P C H FHV CIDMWF SHS+CPLCR+ ++
Sbjct:   44 DPSST-PGGLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIE 122          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 7.450e-19
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  277 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 501
            +G+D +++  +PV  F      KDGLECAVCL+  E  E  RLLPKC H FHVEC+D W  +HSTCPLCR  VD E
Sbjct:  119 SGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.698e-18
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  274 RAGLDPAILRKIPVVAFNQ-QDFKDG---LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEI 540
            R GLD A++   PV A++  ++ K G   LECA+CL+ELED E  RLLP CNH FH++CID W  SH+TCP+CR+ +  + +  G+ +  V +
Sbjct:   92 RGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPL 184          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.698e-18
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  283 LDPAILRKIPVVAFNQQDF---KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPP-NFPT 609
            LD A+L KIP+  ++ ++    ++  EC+VCLSE E+ ++ RLLPKC H FHV+CID WF+S STCPLCR PV          +P  ++        +E+G S+ S P  FPT
Sbjct:   81 LDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV----------QPPFQV--------IETGSSSSSSPLTFPT 175          
The following BLAST results are available for this feature:
BLAST of DY262560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL1M_ARATH3.004e-4443.80RING-H2 finger protein ATL1M OS=Arabidopsis thalia... [more]
ATL1P_ARATH7.923e-3735.49RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL3E_ARATH4.818e-2649.57Putative RING-H2 finger protein ATL3E OS=Arabidops... [more]
ATL3F_ARATH6.957e-2536.84RING-H2 finger protein ATL3F OS=Arabidopsis thalia... [more]
EL5_ORYSJ9.403e-2254.76E3 ubiquitin-protein ligase EL5 OS=Oryza sativa su... [more]
ATL2D_ARATH3.950e-2046.46Putative RING-H2 finger protein ATL2D OS=Arabidops... [more]
ATL4G_ARATH5.704e-1948.75RING-H2 finger protein ATL4G OS=Arabidopsis thalia... [more]
ATL5C_ARATH7.450e-1955.26RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]
ATL4O_ARATH3.698e-1846.24RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
ATL2N_ARATH3.698e-1843.36RING-H2 finger protein ATL2N OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BC08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262560 ID=DY262560; Name=DY262560; organism=Citrus clementina; type=EST; length=1316bp
CTGGGTTTGTTTTGCTTCTAACGAAAAATGAGTGCCTCTGACGGTGATGA
AAATGGATTTAACAACACCGGTTCTCTTGAAATAACGGGACAAATCATGG
TGATAGCAATAATTGTTCTCTTTTTCGTAGTGGTCTTTATTCTGTTTCTT
CACCTGTACGCCAAGTGGTTCTGGTGGCGGATTGAGCAGACGCCGGAACC
TTCTCCCAGTCGTAGCCACCGCCGCCGCCGTCGTTTTGTCTTTGCTCCCG
GGCAGGACCCTGCTGTCACTCTCCGTGCTGGGCTTGATCCTGCAATCCTG
AGGAAAATCCCTGTGGTTGCATTCAACCAGCAGGACTTTAAAGATGGACT
TGAATGTGCAGTGTGCTTAAGCGAGCTTGAAGATGGAGAGAAAGCTAGGC
TGCTGCCGAAATGTAACCATGGGTTTCATGTTGAGTGCATTGACATGTGG
TTTCAGTCTCACTCAACTTGCCCTCTCTGTAGGAACCCCGTTGATGTTGA
ACGCTCAAACAATGGCAACGGTGAACCATCAGTGGAGATTGATATTCAGA
ATTCACAAGAAAGTTTGGAATCTGGGTACTCAACAGATTCACCTCCGAAT
TTCCCTACTAATGTGCTGTTCTGGGGAAATGAAAATCTGGTTAGCTCTGC
TGGTGTTTGCGTGCACGAGGGTGTTTCTTCATCATCATCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTACTGAGATGAATAATAGTCGGCGGGGTGCT
GAAATGTTGGTGATCGATATTCCTGTAAATAGTATGAGTGAGCATTTCTC
ATCATTGTCACCTGTCGAGGAAACAAAGTCGCCTATGACGACAAGATTGA
GGTCATTGAAGAGGCTTTTGAGTAGGGAGAAGAGGGTAAGTCCTTGTGGT
ACTACTGGTACTAGTAGTTCTTGTGATGTTGAACAAGTTAGTAGAGCATA
GATTTCATTTTCAGAGGCAGCTTTTTGTGCCTGAAGATGTGATGGTATAG
TATCTCCGCACATATTGGCCTAATGGTTTGAAAATGATTTCATTCTGGGA
AATCAAAAAACTTGTTGTTCTTCCTGGTGAAAAAGGCAAAGCACCTGGCT
CTATTTTTCTGTTTGAAAAACTTTTTCATTGATTGGTTGTGAAAAAAAAA
AAGTTTTCCCCGTTTTCTAAAAAACTAAAACAATTTTTTTCTTATTTCTT
TCTTTTTTTTGAAAAAAAAATTTTTTTTTAACATATTTAGGTTTTAAGGG
GGAAAAAGACTGGTTAAAAAACAAACCCCTTTAAAAAATTTAAAATTATA
TATATTTTTAGGAAAA
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