DY262560
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 3.004e-44 Identity = 113/258 (43.80%), Postives = 141/258 (54.65%), Query Frame = 1 Query: 157 YAKWFWWRIEQ----------TXXXXXXXXXXXXXXFVFAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV-DVERSNNGNGEPSVEIDIQNSQESLESGYSTD----------------SPPNFPTNVLFWGNENLVSSAGVCVHEGVXXXXXXXXXXXXXXXTEMNNSRRGAEM--LVIDIPVNSMSEHFSSLSPVEETKSPMTT 843 YA+ FWWR+EQ FVFA Q+ + AGLD IL+ I VV F DFKDGLECAVCLS+L DG+KAR+LP+CNHGFHV+CIDMWFQSHSTCPLCRN V VE + +G E + ++ ESG+ST+ P +FPTNVL WG++N V SAG+ V E + ++S R E+ +V+DIP NS SE+ S EE KSPM T Sbjct: 45 YARLFWWRVEQHFNLNLIQSDDPGSTVIGRNPRRRRFVFAQSQEDPLH-NAGLDSKILQSIHVVVFKCTDFKDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHGGSEGLPQ------NQNFESGHSTNQHNPSQDQSFVHEFSTEPLSFPTNVLVWGDQNQVRSAGLVVTE---ESPSGNFAASYNDHQQESSSTRSQEVTAVVVDIPDNS-SENLSERIDEEEPKSPMFT 291
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 7.923e-37 Identity = 104/293 (35.49%), Postives = 133/293 (45.39%), Query Frame = 1 Query: 58 FNNTGSLEITGQIMXXXXXXXXXXXXXXXXXXXYAKWFWWRIEQ------------------TXXXXXXXXXXXXXXFVFAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV-DVERSNNGNGEP----SVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGNENLVSSAGVCVHEGVXXXXXXXXXXXXXXXTEMNNSRRGAEMLVIDIPVNSMSEHFSSLS--------PVEETKSPMTT 843 F + + E+T +I+ YAK +WWRI+Q + F+F PGQD GL L +P+V F Q KDGLEC++CLSEL G+KARLLPKCNH FHVECIDMWFQSHSTCP+CRN V E++++ E + N+ S ST S P FPTNVL WG ++ VS+ V N + + E +V+DI +S H S S EE KSPMTT Sbjct: 12 FGDLSTEEVTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPPVVTRRQRRRFIFVPGQD--ALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAENAGTTNNNHDALSQLSTSS-PEFPTNVLVWGRQDQVSTGNTNV-------------GTQEDGAAGNGASQSQEAVVLDISDSSSRNHNVSSSSSSMRFIVEEEEAKSPMTT 288
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 4.818e-26 Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 1 Query: 274 RAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGN--GEPSVEIDIQNSQESLESGYSTDSPPNFPTNVL 618 R G+ P +LR IP+V FN +DFK LEC VCLSEL DG+KAR+LP C+H FHVECID W QS+STCP+CR V +++S G + + Q S +STD P N T ++ Sbjct: 61 RVGIKPYVLRSIPIVDFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLKQSRTRPELGGRDKSFNQNHDQTSEHHEFSTDPPTNTDTAII 177
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 6.957e-25 Identity = 56/152 (36.84%), Postives = 81/152 (53.29%), Query Frame = 1 Query: 46 DENGFNNTGSLEITGQIMXXXXXXXXXXXXXXXXXXXYAKWFWWRIEQTXXXXXXXXXXXXXXFVFAPGQDPAVTLRA--GLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 495 ++N F+ + + ++G+IM YA+W+ R + F A A ++ A GLDP +++ +PV F+ + KD +ECAVCLSE E+ E R+LP C H FHV+CIDMWF SHSTCPLCR+ V+ Sbjct: 14 EDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVE 165
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 9.403e-22 Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1 Query: 280 GLDPAILRKIPVVAFN-----------QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 498 G+DP +LR +PV ++ +++ DG+ECAVCL+ELEDGE+AR LP+C HGFH EC+DMW SHSTCPLCR V V Sbjct: 98 GVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 181
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 3.950e-20 Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 277 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLE 570 +GLD + +P F+ + K GLEC+VCLS+ ED E RLLPKC H FH+ CID W + H+TCPLCRN V++E + G S + I N E+ E Sbjct: 97 SGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQSETRE 195
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 5.704e-19 Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1 Query: 256 DPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 495 DP+ T GL+P+I++ +P+ F+ +EC+VCLSE +D E R++P C H FHV CIDMWF SHS+CPLCR+ ++ Sbjct: 44 DPSST-PGGLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIE 122
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 7.450e-19 Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 1 Query: 277 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 501 +G+D +++ +PV F KDGLECAVCL+ E E RLLPKC H FHVEC+D W +HSTCPLCR VD E Sbjct: 119 SGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 3.698e-18 Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 274 RAGLDPAILRKIPVVAFNQ-QDFKDG---LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEI 540 R GLD A++ PV A++ ++ K G LECA+CL+ELED E RLLP CNH FH++CID W SH+TCP+CR+ + + + G+ + V + Sbjct: 92 RGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPL 184
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 3.698e-18 Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 283 LDPAILRKIPVVAFNQQDF---KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPP-NFPT 609 LD A+L KIP+ ++ ++ ++ EC+VCLSE E+ ++ RLLPKC H FHV+CID WF+S STCPLCR PV +P ++ +E+G S+ S P FPT Sbjct: 81 LDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV----------QPPFQV--------IETGSSSSSSPLTFPT 175 The following BLAST results are available for this feature:
BLAST of DY262560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262560 ID=DY262560; Name=DY262560; organism=Citrus clementina; type=EST; length=1316bpback to top |