DY262563

Overview
NameDY262563
Unique NameDY262563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1230
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262563_ssr57 microsatellite DY262563_ssr57:57..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY262563 vs. ExPASy Swiss-Prot
Match: GAT14_ARATH (GATA transcription factor 14 OS=Arabidopsis thaliana GN=At5g66320 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.200e-35
Identity = 115/334 (34.43%), Postives = 149/334 (44.61%), Query Frame = 2 
Query:  107 EAALKTSLRKEMALKLSPQAVDEICAVNLP-NGVACXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXHTLTVCSKQDQDLDERLN-------FDDLGPIPTSELAVPTDDVANLEWLSHFVEDSFAEYSSPFPAGTLPVKAKENGAEPEHKPALAI---HCFKTPIPAKARSKRSRTGLRIWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNPGS--LASLRPAEPFIVXXXXXXXXXXXXXEGYNA-GGNISWGQFTRRCSHCGVQKTPQWRTGPLEARLCVTHVGFVIVGAGSF*VP---PRL*PDLFSELHSNHHRKVMENPAQK 1057
            +AALK+S+RKEMALK +    +E  AV    NG +                  A                    + V S++  D  + L         DD G +PTSEL++P DD+ANLEWLSHFVEDSF EYS P   GT   K      + +H P  A+    CFK+P+PAKARSKR+R GL++W                             + P S   +     EP +                 +   G +   Q  R+CSHCGVQKTPQWR GP+ A+      G V   +G   +P   P   P   SELHSNHHRKV+E   +K
Sbjct:    3 QAALKSSVRKEMALKTTSPVYEEFLAVTTAQNGFSVDDFSVDDLLDLSNDDVFADEETDLKAQH--------EMVRVSSEEPNDDGDALRRSSDFSGCDDFGSLPTSELSLPADDLANLEWLSHFVEDSFTEYSGPNLTGTPTEKPAWLTGDRKH-PVTAVTEETCFKSPVPAKARSKRNRNGLKVW---------SLGSSSSSGPSSSGSTSSSSSGPSSPWFSGAELLEPVVTSERPPFPKKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAGPMGAKTLCNACG-VRYKSGRL-LPEYRPACSPTFSSELHSNHHRKVIEMRRKK 316
The following BLAST results are available for this feature:
BLAST of DY262563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GAT14_ARATH5.200e-3534.43GATA transcription factor 14 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100BC11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262563 ID=DY262563; Name=DY262563; organism=Citrus clementina; type=EST; length=1230bp
CTTCCAATTCCACACCTTTACCCCCATTCATCTCTCTGCAACCTCTCTCC
TATCTTCTCCTCCTCCTCCTCCTCCTCCCACTGATTTTCAGGATATGGAA
TGCGTTGAAGCCGCTTTGAAGACCAGTTTGAGGAAGGAAATGGCTCTGAA
ATTAAGCCCACAGGCGGTTGATGAAATTTGTGCCGTTAATTTACCAAACG
GCGTCGCTTGCGACGACTTCTTCGTTGACGACCTTCTTGACTTCTCTAAC
GATGACGTTGTCGCTGAACAACAGCAACTGCAAGAGCCCCAACAAGAGAA
AGGAGAAGAACAGAAGAAACACACCCTCACTGTCTGTTCAAAACAAGACC
AAGACTTGGACGAGAGACTCAATTTTGACGACTTGGGTCCCATACCCACC
AGCGAACTCGCCGTCCCGACGGATGATGTTGCGAACCTTGAATGGTTGTC
TCATTTTGTTGAGGATTCTTTCGCGGAATACTCTTCACCGTTTCCCGCCG
GAACTTTGCCGGTGAAAGCAAAAGAAAACGGGGCTGAACCGGAACATAAA
CCGGCTTTAGCAATTCATTGTTTCAAGACTCCGATTCCAGCCAAGGCCAG
GAGCAAACGCTCGAGAACCGGCCTTCGAATTTGGTCTCTTGGGTCCCCTT
CTTTATCGGACTCATCCTCAACTTCAAGTGCCTCATCTTCGTCATCTCCT
TCGAGCCCTTGGCCAGTTTCCACTAACCCCGGTTCATTGGCCAGCCTTAG
ACCCGCCGAACCGTTCATTGTAAAACCTCCGAAGAAAAAGTTGAAGAAAA
AATCGCCGCCGGAAGGGTATAACGCTGGAGGTAATATCAGTTGGGGTCAG
TTTACTCGCCGGTGCAGCCACTGCGGGGTTCAAAAGACCCCACAGTGGCG
AACCGGACCGCTTGAAGCCAGACTCTGTGTAACGCATGTGGGGTTCGTTA
TAGTCGGGGCCGGCTCTTTCTGAGTACCGCCCCGCTTGTAGCCCGACCTT
TTCAGTGAACTGCATTCGAACCATCACCGTAAAGTGATGGAAAATCCGGC
CCAAAAGGAAAGGGCTGGGTCGGAATGAGCCCGGTCTGGCTCCGGCGGTT
TGGTCCGAGTTTTTAAAGGGAATTTATATTTAAGAAGGGATAAAAAAAAC
CTCAAAAAGGGAAAGTATTTATGGGTTTTTTTTTTTTTTTTTGAACCCCG
GGTTTAAGGGTAGGGGGGCGTCGGGTTTCT
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