DY262566
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY262566 vs. ExPASy Swiss-Prot
Match: ERCC2_ARATH (DNA repair helicase UVH6 OS=Arabidopsis thaliana GN=UVH6 PE=1 SV=1) HSP 1 Score: 479.559 bits (1233), Expect = 1.892e-134 Identity = 229/263 (87.07%), Postives = 249/263 (94.68%), Query Frame = 2 Query: 152 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRTTLEGATRNL 940 MIFK+EDVTVYFPYDNIYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY LS+P++P+KL+YCTRTVHEMEKTL ELKLLH+YQ RHLG AKILA+GLSSRKNLCVN++VLAAENRDSVDAACRKRTASWVRAL+ ENPN+E C+FFENYEKAA A+LPPGVYTL+DLRAFGK +GWCPYFLARHM+QFANV+VYSYQYLLDPKVAG ISKE+QKESVVVFDEAHNIDNVCIEALSVSVRR TLEGA RNL Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYRLSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTKVLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNIDNVCIEALSVSVRRVTLEGANRNL 263
BLAST of DY262566 vs. ExPASy Swiss-Prot
Match: ERCC2_CRIGR (TFIIH basal transcription factor complex helicase subunit OS=Cricetulus griseus GN=ERCC2 PE=1 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 5.236e-76 Identity = 137/263 (52.09%), Postives = 185/263 (70.34%), Query Frame = 2 Query: 152 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRTTLEGATRNL 940 M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++ V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R TL+ NL Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRAFPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDAHGRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNL 263
BLAST of DY262566 vs. ExPASy Swiss-Prot
Match: ERCC2_MOUSE (TFIIH basal transcription factor complex helicase subunit OS=Mus musculus GN=Ercc2 PE=2 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 8.931e-76 Identity = 137/263 (52.09%), Postives = 185/263 (70.34%), Query Frame = 2 Query: 152 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRTTLEGATRNL 940 M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++ V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R TL+ NL Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNL 263
BLAST of DY262566 vs. ExPASy Swiss-Prot
Match: ERCC2_HUMAN (TFIIH basal transcription factor complex helicase subunit OS=Homo sapiens GN=ERCC2 PE=1 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 8.931e-76 Identity = 137/263 (52.09%), Postives = 183/263 (69.58%), Query Frame = 2 Query: 152 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRTTLEGATRNL 940 M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++ V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R TL+ NL Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNL 263
BLAST of DY262566 vs. ExPASy Swiss-Prot
Match: ERCC2_BOVIN (TFIIH basal transcription factor complex helicase subunit OS=Bos taurus GN=ERCC2 PE=2 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 8.931e-76 Identity = 137/263 (52.09%), Postives = 184/263 (69.96%), Query Frame = 2 Query: 152 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRTTLEGATRNL 940 M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++ V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R TL+ NL Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANL 263
BLAST of DY262566 vs. ExPASy Swiss-Prot
Match: ERCC2_DICDI (TFIIH basal transcription factor complex helicase repD subunit OS=Dictyostelium discoideum GN=repD PE=2 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 1.577e-72 Identity = 135/264 (51.14%), Postives = 186/264 (70.45%), Query Frame = 2 Query: 152 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA-KILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRTTLEGATRNL 940 M F +ED+ VYFPY IYPEQYSYM+ LKR+LD G C+LEMP+GTGKT++LLSLI+SY + P +KLIYC+RTV E+E+ E + + Y+ +G + K L + +SSR+NLC+ RV + VDA CR+ T+SW R E+P E C+FFEN+E +L GVY+L+DL+ +G + CPYFL+RHM+ FAN+V++SYQYLLDPK+A +IS S+VVFDEAHNIDNVCI ALS+++ L+ +++N+ Sbjct: 1 MKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQVKNPS--IKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESPKTLCMSMSSRRNLCIQPRVSEERDGKVVDALCRELTSSWNR----ESPTSEKCKFFENFESNGKEILLE-GVYSLEDLKEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNIDNVCINALSINIDNKLLDTSSKNI 257
BLAST of DY262566 vs. ExPASy Swiss-Prot
Match: RAD15_SCHPO (DNA repair helicase rad15 OS=Schizosaccharomyces pombe GN=rad15 PE=1 SV=2) HSP 1 Score: 267.314 bits (682), Expect = 1.476e-70 Identity = 132/264 (50.00%), Postives = 183/264 (69.32%), Query Frame = 2 Query: 152 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRTTLEGATRNLV 943 M F ++D+ + FPY IYPEQY YM +LK +LDA G LLEMP+GTGKTI+LLSLI SY PE+ KLIYC+RT+ E++K LAELK L Y+T LG L +GL+SRKNLC++ V +N + VDA CR TA +VR ++ TCEF +N E +++ GV+TL D+ +G++ CPYF R M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNIDNVCIE+LS+ + ++L A+++++ Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQQHYPEHR-KLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPSVRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDDITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNIDNVCIESLSIDLTESSLRKASKSIL 263
BLAST of DY262566 vs. ExPASy Swiss-Prot
Match: RAD3_YEAST (DNA repair helicase RAD3 OS=Saccharomyces cerevisiae GN=RAD3 PE=1 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 2.064e-64 Identity = 120/263 (45.63%), Postives = 173/263 (65.78%), Query Frame = 2 Query: 152 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENP--NIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRTTLEGATR 934 M F ++D+ V FPY IYPEQY+YM ++K+ LD G+ +LEMP+GTGKT++LLSL +Y + PE+ K+IYC+RT+ E+EK L EL+ L +Y+T+ LG +GL+SRKNLC++ V VD CR+ T + E+P N+E CE+ EN LP GV++ + L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+S+V+FDEAHNIDNVCIE+LS+ + L ATR Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQMHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPEVSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFEKLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHNIDNVCIESLSLDLTTDALRRATR 262
BLAST of DY262566 vs. ExPASy Swiss-Prot
Match: RTEL1_MOUSE (Regulator of telomere elongation helicase 1 OS=Mus musculus GN=Rtel1 PE=2 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 1.767e-23 Identity = 85/283 (30.04%), Postives = 127/283 (44.88%), Query Frame = 2 Query: 164 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL-------------------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 895 L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL L S LS + K+IY +RT ++ + + EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS +C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++ Y YLLD K S ++ K +VV+FDEAHN++ +C E+ S Sbjct: 6 LNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIREL--------RNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS------------RSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESAS 264
BLAST of DY262566 vs. ExPASy Swiss-Prot
Match: RTEL1_RAT (Regulator of telomere elongation helicase 1 OS=Rattus norvegicus GN=Rtel1 PE=2 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 5.143e-23 Identity = 82/283 (28.98%), Postives = 128/283 (45.23%), Query Frame = 2 Query: 164 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL-------------------------SLITSYVLSKPENPV--------------KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 895 L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL L S LS + K+IY +RT ++ + + EL R+ K+ +G SR+ LC++ V E+ + CRK+ AS +C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S Sbjct: 6 LNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLRDAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQVIGEL--------RNTSYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS------------RSCHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDL-KGTVVIFDEAHNVEKICEESAS 264 The following BLAST results are available for this feature:
BLAST of DY262566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262566 ID=DY262566; Name=DY262566; organism=Citrus clementina; type=EST; length=1345bpback to top |