DY262749

Overview
NameDY262749
Unique NameDY262749
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262749_ssr92 microsatellite DY262749_ssr92:92..106. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262749_ssr173 microsatellite DY262749_ssr173:173..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15325 contig Ccv1_Contig15325:43..1270. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262749 vs. ExPASy Swiss-Prot
Match: REM16_ARATH (B3 domain-containing protein REM16 OS=Arabidopsis thaliana GN=REM16 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.013e-38
Identity = 82/192 (42.71%), Postives = 111/192 (57.81%), Query Frame = 1
Query:  214 MGEACNECRSWEEEIYWNHFQCIHFIQYLHTGFEYQLAIPEKVAINLRTKLPVTVSLKAPSGFTWVVGITTRDH-TLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEKAVSYFVKKCGHTEHSNRRETRRKIRETSVEGIPNSSHCDVDITPPEKRSDDDINKIPVGKPIVTPASIKKI 786
            M E C +C  WEEE+YW HFQ +HF Q L  GF  +L IP K + + + KLP  V+LK+PSG T+ VG+   D  T+ F  GW +FVKDH L END+L FK++G S F+VL+FDGQ+ CEK  SYFV+KCGH E       + K   T  E               E+  + DI+      P+++P S  ++
Sbjct:    1 MEENCEDCMKWEEELYWTHFQTLHFTQLLLPGFHNRLVIPRKFSTHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEENDLLVFKFHGVSEFEVLVFDGQTLCEKPTSYFVRKCGHAE-------KTKASHTGYE--------------QEEHINSDIDTASAQLPVISPTSTVRV 171          
BLAST of DY262749 vs. ExPASy Swiss-Prot
Match: Y3221_ORYSJ (B3 domain-containing protein Os03g0622100 OS=Oryza sativa subsp. japonica GN=Os03g0622100 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.329e-22
Identity = 62/173 (35.84%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  214 MGEACNECRSWEEEIYWNHF--QCIHFIQYLHTGFEYQLAIPEKVAINLRTKLPVTVSLKAPSGFTWVVGITTRDH-TLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEKAVSYFVKKCGHTEHSNRRETRRKIRETSVEGIPNSSH-CDVDITPPEKRS 720
            +G+ C+ C+ W+E  YW+H    C HF+ Y+   F   + +P + A N    +   V+LK+PSG TW +G+   D   L    GW EFV  + + END L F+Y+G S FDVL+FD  S CEKA  +FV+  G      R E          +G  N  H   +++TP +  S
Sbjct:    6 IGKNCSVCKEWQEHCYWSHMADDCKHFLTYMVGDFTESMIVPSRFANNFNGHISEVVNLKSPSGKTWSIGVAYSDTGELVLRSGWKEFVDANGVQENDCLLFRYSGVSSFDVLIFD-PSGCEKASPHFVENRGF----GREEKSAGAEGGGRDGDKNGHHQHQLEMTPHKNSS 173          
BLAST of DY262749 vs. ExPASy Swiss-Prot
Match: Y3222_ORYSJ (B3 domain-containing protein Os03g0622200 OS=Oryza sativa subsp. japonica GN=Os03g0622200 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.225e-19
Identity = 51/140 (36.43%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  214 MGEACNECRSWEEEIYWNHF--QCIHFIQYLHTGFEYQLAIPEKVAINLRTKLPVTVSLKAPSGFTWVVGITTRDH-TLYFSHGWPEFVKDHFLGENDILFFKYNG-GSHFDVLMFDGQSQCEKAVSYFVKKCGHTEHSN 621
            +G+ C+ C+ W+E  YW+H      HF++++   F   + +P + A N    +   V+L++PSG TW +G+   D   L    GW EFV  + + E D L F+Y+G  S FDVL+FD  S CEKA  +FV   G     N
Sbjct:    6 IGKNCSVCKEWQEHCYWSHMADHSKHFLKHMVGDFTESMTVPARFANNFNGHISEEVNLRSPSGETWSIGVANSDAGELVLQPGWKEFVDGNGIEEGDCLLFRYSGVSSSFDVLIFD-PSGCEKASPHFVGSHGFGRAEN 144          
BLAST of DY262749 vs. ExPASy Swiss-Prot
Match: Y1223_ORYSJ (B3 domain-containing protein Os12g0592300 OS=Oryza sativa subsp. japonica GN=Os12g0592300 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.164e-18
Identity = 55/135 (40.74%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  214 MGE-ACNECRSWEEEIYWNHFQC--IHFIQYLHTGFEYQLAIPEKVAINLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFF----KYNGGSHFDVLMFDGQSQCEKAVSYFVKK 597
            MGE  C  CR W+E  Y  H     I F + +   F + ++IPEKVA     ++    +LKAPSG TW V +      L    GW +F K H L END+LFF    + NG   FDVL+FD  S CEK   +F+ K
Sbjct:    1 MGEKGCESCREWQEHCYREHMDVSRIRFFRLMTGDFAHGISIPEKVADRFSGQITKGFNLKAPSGETWRVSVEKVADELILMSGWEDFAKAHELQENDLLFFTCNGRCNGSFSFDVLIFDA-SGCEKVSCFFIGK 134          
BLAST of DY262749 vs. ExPASy Swiss-Prot
Match: Y1209_ORYSJ (B3 domain-containing protein LOC_Os12g40090 OS=Oryza sativa subsp. japonica GN=LOC_Os12g40090 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.472e-13
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  280 IHFIQYLHTGFEYQLAIPEKVAINLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSH----FDVLMFDGQSQCEKAVSYFVKK 597
            I F + +   F + ++IPEKVA     ++    +LK+PSG TW VG+      L    GW +F K H L END+LFF  NG  +    FDVL+FD  S CEK   +F  K
Sbjct:    6 IRFFRLMTGDFAHGISIPEKVAEIFSGQITKGFNLKSPSGETWRVGVAKVADELILKSGWEDFAKAHELQENDLLFFTCNGHGNGSCSFDVLIFDA-SGCEKVSCFFTGK 114          
BLAST of DY262749 vs. ExPASy Swiss-Prot
Match: Y3216_ORYSJ (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica GN=Os03g0621600 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.777e-12
Identity = 55/172 (31.98%), Postives = 77/172 (44.77%), Query Frame = 1
Query:  226 CNECRSWEEEIYWN-HFQCIHFIQYLHTGFEYQLAIPEKVAINLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEKAVSYFVKKCGHTEHSNRRETRRKIRETSVEGIPNSSHCDVDITPPEKRSDDDINK 738
            C  CR      +W+   Q  +F + +  GF  Q+ IP K A N R ++  T+ LKA +G T  V +    + L  + GW EF   H +   D L F+Y G S F+V +FD  S C KA S+     G     N +    +I   S E +   S        PEK   D+ NK
Sbjct:  132 CERCRG---RGFWDTDDQDTYFFKVMIGGFRRQMTIPYKFAENFRDQIQGTIKLKARNGNTCSVLVDKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQFEVKIFD-PSGCVKAASHNAVNIGQ-HAQNMQGDPIEILSCSDEHLRAQSLTTERQNQPEKDVIDNCNK 298          
BLAST of DY262749 vs. ExPASy Swiss-Prot
Match: Y3440_ARATH (B3 domain-containing protein At4g34400 OS=Arabidopsis thaliana GN=At4g34400 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.010e-11
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 1
Query:  286 FIQYLHTGFEYQLAIPEKVAINLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEK 573
            F+ +  + F   + IP     ++  + P TV L+ P G +W V    +D  + FS GWP+FV+D+ L + D L F YNG   F+V +F G   C++
Sbjct:   20 FVSHFSSEF---MVIPVSYYDHIPHRFPKTVILRGPGGCSWKVATEIKDDEVLFSQGWPKFVRDNTLNDGDFLTFAYNGAHIFEVSIFRGYDACKE 112          
BLAST of DY262749 vs. ExPASy Swiss-Prot
Match: Y1208_ORYSJ (B3 domain-containing protein LOC_Os12g40080 OS=Oryza sativa subsp. japonica GN=LOC_Os12g40080 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.839e-11
Identity = 49/196 (25.00%), Postives = 86/196 (43.88%), Query Frame = 1
Query:  235 CRSWEEEIYWNHFQCI--HFIQYLHTGFEYQLAIPEKVAINLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEKAVSYFVK------KCGHTEHSNRRETRRKIRETSVEGIPNSSHC--DVDITPPEKRSDDDINKIPVGKPIVTPASIKKIKR 792
            C++     YW H       FI+ + T F+  + IP K A N   ++  TV L+  +G T+ V +    + L    GW  F   + L + DIL F Y+G SHF V ++D  S CEK +   +       +     H+N  + +R  +   +  + +S H     +I P    S     ++P  + +  P  +  +++
Sbjct:    8 CKNCVANHYWLHMDNHGKSFIKVMITDFKNGVTIPAKFARNFGGQMSGTVKLETRNGKTYEVQVAKELNNLVLRSGWERFASAYELEKGDILVFIYSGNSHFKVWIYD-PSACEKGLPCIITEQLPRVQQRSISHNNHTQLKRNAKSAKLY-VDSSGHSKETSEINPANSPSWKPTERVPSSEELDEPVDLANVQK 201          
The following BLAST results are available for this feature:
BLAST of DY262749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
REM16_ARATH1.013e-3842.71B3 domain-containing protein REM16 OS=Arabidopsis ... [more]
Y3221_ORYSJ1.329e-2235.84B3 domain-containing protein Os03g0622100 OS=Oryza... [more]
Y3222_ORYSJ5.225e-1936.43B3 domain-containing protein Os03g0622200 OS=Oryza... [more]
Y1223_ORYSJ1.164e-1840.74B3 domain-containing protein Os12g0592300 OS=Oryza... [more]
Y1209_ORYSJ1.472e-1340.91B3 domain-containing protein LOC_Os12g40090 OS=Ory... [more]
Y3216_ORYSJ2.777e-1231.98Putative B3 domain-containing protein Os03g0621600... [more]
Y3440_ARATH4.010e-1134.38B3 domain-containing protein At4g34400 OS=Arabidop... [more]
Y1208_ORYSJ6.839e-1125.00B3 domain-containing protein LOC_Os12g40080 OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DD04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262749 ID=DY262749; Name=DY262749; organism=Citrus clementina; type=EST; length=1228bp
TCCGCATTAGACACAGTCACAAGGTTGAAGGGGTAACAGCTAATACCTTC
AAGCTTCAACTGCGTCTTTGTCATATCTTTCCTGCAAGAATATCAAATCA
AATCAACTGTTTCGCTTGTGCCTCATCTGTTGTTCTGGAGTAGCTGGTAA
AAAAGTCTCTGAAGTTGAGTTGAGATCAGATCAGATCGGATCCAAAGCTT
CAGGTCGAGGGACATGGGGGAAGCGTGCAACGAATGCAGGAGTTGGGAAG
AGGAAATTTATTGGAACCATTTCCAGTGTATCCATTTCATTCAGTATCTT
CATACTGGTTTTGAATACCAACTTGCTATTCCCGAAAAGGTTGCTATAAA
TTTAAGAACAAAGCTTCCAGTAACCGTCTCTCTGAAGGCTCCCAGCGGTT
TTACATGGGTCGTAGGAATTACAACGAGAGATCATACCTTGTACTTCAGT
CATGGTTGGCCAGAATTTGTCAAAGATCATTTCCTGGGAGAAAATGATAT
CTTGTTCTTTAAGTACAATGGAGGCTCACATTTTGATGTTTTAATGTTTG
ATGGGCAAAGCCAATGTGAAAAAGCTGTTTCGTATTTTGTCAAAAAATGT
GGGCATACGGAGCACAGCAATCGACGTGAAACCAGAAGAAAAATAAGAGA
AACTTCAGTGGAAGGAATTCCCAACTCATCACATTGTGATGTTGACATCA
CTCCACCAGAGAAAAGAAGCGATGATGACATCAACAAAATTCCAGTAGGA
AAGCCAATTGTCACGCCAGCTTCTATCAAAAAAATTAAGAGGGATGATAC
TTCTAACGAGTTTGTTCGTAGCAGGCGAAATTCATATTTTGTCCAAAAAA
CGAAGCATAAAAACCATGGCAGTGTTTCCCAAACAAAAAAAAAAATTGAC
AAAGTTTTGTGAAAGAATTCCTAACTCTTCAAATTGGGATGTTAACTTGA
CTTTGCCAGAAAAGCCAATTAAGGATAATTAAAAAAAAAACAATGGGAAA
GCCAATTGTCCACCTAAAATCTTAAAAAAAAATTTTGAAGGGTTGAAAAA
TTTAATGAACCTTCCCCAAAAAATGAAAAATTAAAAAAAAAAAAACAAGT
TTTACTAAATTGTCTAAAATTTATAAAAACCCAACACTGCCAATGAAAAA
AAAAAAACCCCTCAGTGAAAAAGTGGGCATTTGGAACCCTCCCTTTTTCA
CCTAAATACTAGGGTGGGGGTTCTCACA
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