DY262750

Overview
NameDY262750
Unique NameDY262750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1229
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9372 contig Ccv1_Contig9372:21..1249. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY262750 vs. ExPASy Swiss-Prot
Match: Y4920_ARATH (Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis thaliana GN=At4g37920 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.493e-48
Identity = 87/229 (37.99%), Postives = 140/229 (61.14%), Query Frame = 3 
Query:  171 RLRKSSLAAVARDVSAVYHDSNEPASIREDSVMDGEKRDEKDGSKSLDDGKMIRVCDKLIEVFMVDKPTPTDWRRLLVFSKEWNNLRSNFFKRCQDRADAEVDPEMXXXXXXXXXXXXEIDEDVQRHNELLEVIKAAPSEVSQIVSRRRKDFTQEFFEHLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDIINSPSVDAACRKIDSLAE 857
            ++RKSS    A D   V ++    A ++  SV D  + +  +G        M + CDK+I++F+ +KP    W+  LV   EWN    NF+KRC+ RAD E DP +            +ID+++++HN+LL+ I+  P++++ I ++RR+DFT EFF ++  ++E+  +    +D +A+L   C++AV AYD T ES+E L+ A+ KF+DI+NSPSVD+AC KI SLA+
Sbjct:   41 KIRKSSTITFATDT--VTYNGTTSAEVKS-SVEDPMEVEVAEGYT------MAQFCDKIIDLFLNEKPKVKQWKTYLVLRDEWNKYSVNFYKRCRIRADTETDPILKQKLVSLESKVKKIDKEMEKHNDLLKEIQENPTDINAIAAKRRRDFTGEFFRYVTLLSET-LDGLEDRDAVARLATRCLSAVSAYDNTLESVETLDTAQAKFEDILNSPSVDSACEKIRSLAK 259

HSP 2 Score: 51.9878 bits (123), Expect = 1.493e-48
Identity = 22/60 (36.67%), Postives = 39/60 (65.00%), Query Frame = 2 
Query:  833 QKNRQSGRENQLDSALVLMITKAWSAAKESNMMKEEVKNILYHLYMTARGTFQRLCQKKL 1012
            +K R   +  +LDS+L+L+I  A++AAKES  +  E K+I+YHLY   + + + +  K++
Sbjct:  252 EKIRSLAKAKELDSSLILLINSAYAAAKESQTVTNEAKDIMYHLYKATKSSLRSITPKEI 311
The following BLAST results are available for this feature:
BLAST of DY262750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4920_ARATH1.493e-4837.99Uncharacterized protein At4g37920, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DD05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262750 ID=DY262750; Name=DY262750; organism=Citrus clementina; type=EST; length=1229bp
TTCAGCAGTGCTTTCTAATGGAGTTGGCGCGTGTGGCTTCCCAAGGCTCT
TGCTTTCTCCCTCTCATAAATTTTCGAGCTCGGGCACCTGTCTCTTCCAT
CAGTAGCTCAGTTCCAATTTTATTTTCCTCTCATAAATTTAAATGTTGTC
CTTTGCTGGTTAATCCGGTGAGGCTGCGAAAGTCCTCCCTTGCTGCTGTT
GCTCGTGATGTAAGTGCCGTATATCATGATTCTAATGAGCCTGCTAGTAT
TCGTGAGGATTCCGTGATGGATGGTGAAAAGAGGGATGAAAAAGATGGTT
CTAAGAGCTTGGATGATGGTAAAATGATCCGAGTATGTGACAAGCTCATT
GAGGTTTTCATGGTTGACAAGCCTACACCGACTGACTGGAGAAGGTTGCT
CGTTTTCAGCAAGGAATGGAACAACCTAAGGTCTAATTTCTTCAAGCGTT
GTCAGGACCGAGCAGACGCTGAGGTGGATCCTGAAATGAAGCACAAGCTT
CTCCGGCTTGGAAGGAAGCTGAAAGAGATTGATGAAGATGTGCAAAGACA
CAATGAACTTCTTGAAGTGATCAAGGCAGCACCATCAGAAGTAAGTCAAA
TAGTTTCCAGGCGTCGTAAGGATTTCACTCAAGAATTTTTTGAGCATCTT
CACACTGTAGCAGAATCGTATTACAATGATCCAGCCAAACAAGATGATAT
AGCAAAGCTTGGAAAATTGTGCGTGGCTGCTGTTCAAGCCTATGATACAA
CAACTGAGAGCATTGAAGCACTGAATGCTGCAGAGTTGAAGTTCCAAGAT
ATTATCAATTCACCTTCTGTAGATGCTGCTTGCAGAAAAATAGACAGTCT
GGCCGAGAAAATCAACTTGATTCAGCATTGGTGCTGATGATCACCAAAGC
ATGGTCAGCTGCCAAGGAGTCCAACATGATGAAAGAGGAGGTCAAAAACA
TACTTTATCATTTATACATGACTGCAAGAGGTACCTTTCAAAGGCTCTGC
CAAAAGAAGTTAGGATTCTAAAGTATCTTCTCAAAATTGAGGATCCTGAA
GGAAAAAATGGGGGGGCCTAAAAAAAGGCTTTTACCCCAAAAAAAAAAAA
TTGAAAGGGAAAGAAAGGGGAGAACCTCTTTAACCCAACCCCCAAAAAAG
GCCCCCCGCCCCTGTGGAAAAAAAATTTGGGGGGGAGAGCTTAATAATTT
TTATTCCAAAAAAAGGAGTCCCCCTTTTT
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