DY262751

Overview
NameDY262751
Unique NameDY262751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1302
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262751_ssr43 microsatellite DY262751_ssr43:43..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262751 vs. ExPASy Swiss-Prot
Match: SCAI_MOUSE (Protein SCAI OS=Mus musculus GN=Scai PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.687e-29
Identity = 95/314 (30.25%), Postives = 148/314 (47.13%), Query Frame = 2
Query:  179 FRALIESADRKFARVRDLPLYGHRSQNQHYFQKVFKAYMRLWKYQQENRAKLVAS-GLNRWEIGEIASRIGQLYFNQYMRTSEARFIVEAYVFYEAILSRKYFEGA-KVKQLGVRFKELRFYARFLLVSLILNRTEMVKFLVDRFRDLVDDCNANFRLLFHM-WHVSTPRRF*NLRMQS*QAITEMRXXXXXXXWTLIECCNVWNGSQPDLFTKSALFYPMIILVLQLIIQGTSGVI-------------------DINFVADMTDPSLP---------PNPRKAVLYRPSATHLLTVIATVCEELPPKNIKVL 1027
            F  L++ + + F  +RDLP YG + Q Q YF + F  Y +LWK+QQ++R  L    GL RW+IGEIAS+IGQLY++ Y+RTSE  ++ EA+ FY AI  R Y+    K  +  +  K+LR+YARF++V L+LN+ ++VK LV    D ++D    F     + W         NL +Q   A  E            I   +           +  +    + L   LII   +  +                    +N  + M  P +           NP K +LY+P+ + L T +A   +ELP  ++ ++
Sbjct:   62 FCYLLDKSKQLFNGLRDLPQYGQK-QWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEW---------NLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGIQEPADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLI 365          
BLAST of DY262751 vs. ExPASy Swiss-Prot
Match: SCAI_HUMAN (Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.687e-29
Identity = 95/314 (30.25%), Postives = 148/314 (47.13%), Query Frame = 2
Query:  179 FRALIESADRKFARVRDLPLYGHRSQNQHYFQKVFKAYMRLWKYQQENRAKLVAS-GLNRWEIGEIASRIGQLYFNQYMRTSEARFIVEAYVFYEAILSRKYFEGA-KVKQLGVRFKELRFYARFLLVSLILNRTEMVKFLVDRFRDLVDDCNANFRLLFHM-WHVSTPRRF*NLRMQS*QAITEMRXXXXXXXWTLIECCNVWNGSQPDLFTKSALFYPMIILVLQLIIQGTSGVI-------------------DINFVADMTDPSLP---------PNPRKAVLYRPSATHLLTVIATVCEELPPKNIKVL 1027
            F  L++ + + F  +RDLP YG + Q Q YF + F  Y +LWK+QQ++R  L    GL RW+IGEIAS+IGQLY++ Y+RTSE  ++ EA+ FY AI  R Y+    K  +  +  K+LR+YARF++V L+LN+ ++VK LV    D ++D    F     + W         NL +Q   A  E            I   +           +  +    + L   LII   +  +                    +N  + M  P +           NP K +LY+P+ + L T +A   +ELP  ++ ++
Sbjct:   62 FCYLLDKSKQLFNGLRDLPQYGQK-QWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEW---------NLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLI 365          
BLAST of DY262751 vs. ExPASy Swiss-Prot
Match: SCAI_DICDI (Protein SCAI homolog OS=Dictyostelium discoideum GN=scai PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.509e-29
Identity = 69/157 (43.95%), Postives = 104/157 (66.24%), Query Frame = 2
Query:  167 VSQTFRALIESADRKFARVRDLPLYGHRSQNQHYFQKVFKAYMRLWKYQQENRAKLVAS---GLNRWEIGEIASRIGQLYFNQYMRTSEARFIVEAYVFYEAILSRKYFEGAKV-KQLGVRFKELRFYARFLLVSLILNRTEMVKFLVDRFRDLVDD 625
            + +TF  L+  + R F  +RDLP +G   Q Q +FQK F+ Y +LWK+QQ+ R+ L      GL R EIGEIAS+IGQLY++ Y+RTS+  ++ E+Y+FYEAI  R YF+   + K   +  K+LR+YARF++V L+LN+ ++V  L++     V+D
Sbjct:   61 IIKTFEHLLRKSQRLFIGLRDLPQFGR--QWQPFFQKTFELYTKLWKFQQQYRSILEDKSKYGLKRCEIGEIASKIGQLYYHYYLRTSDTNYLNESYIFYEAIRLRSYFKDVSLDKTPDMMVKQLRYYARFIVVCLLLNKKKVVFDLIEELLKHVND 215          
The following BLAST results are available for this feature:
BLAST of DY262751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SCAI_MOUSE2.687e-2930.25Protein SCAI OS=Mus musculus GN=Scai PE=1 SV=2[more]
SCAI_HUMAN2.687e-2930.25Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2[more]
SCAI_DICDI3.509e-2943.95Protein SCAI homolog OS=Dictyostelium discoideum G... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DD06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262751 ID=DY262751; Name=DY262751; organism=Citrus clementina; type=EST; length=1302bp
TTCACACCACCCAAAAGCGGAGCGTACATCTTCGTCTTCCCGTCTCTCTC
TCTAAGGCTAACTCTAAAACCATATTTCTCATTTCCCGATGGACACCTAG
TAGTTATAGCAGCGGCAAGCATTATTAGGGGGGACTTTTTCGACCTTCAT
GTCTCAAGACGAAGTCGTTTCTCAAACGTTTCGCGCTCTTATCGAAAGCG
CGGACCGCAAGTTCGCCAGAGTCCGCGACCTTCCTTTGTACGGCCACCGA
TCCCAAAACCAACACTACTTCCAGAAGGTGTTCAAAGCTTACATGCGCTT
ATGGAAGTACCAGCAAGAGAACCGGGCTAAGCTCGTTGCCTCCGGTCTGA
ACCGGTGGGAGATTGGCGAGATCGCCAGCCGGATCGGGCAGCTGTACTTC
AACCAGTACATGAGGACGAGCGAGGCCAGGTTTATTGTTGAGGCTTATGT
GTTTTACGAGGCCATTTTGAGTAGGAAATATTTCGAGGGAGCGAAAGTTA
AGCAACTGGGAGTTAGGTTTAAGGAGCTGAGGTTTTATGCTCGGTTTTTG
CTGGTTTCTTTGATTTTAAACCGGACTGAGATGGTCAAGTTTCTCGTCGA
CCGCTTCAGGGACTTGGTCGATGATTGCAACGCCAATTTTCGGCTTCTCT
TCCATATGTGGCACGTTTCCACGCCAAGAAGGTTTTGAAATTTAAGGATG
CAATCTTGACAAGCTATCACCGAAATGAGGTTAAATTTGCTGAACTTACT
TTGGACACTTATAGAATGTTGCAATGTTTGGAATGGGAGCCAACCGGATC
TTTTTACCAAAAGCGCCCTGTTCTACCCAATGATCATTCTGGTGCTTCAA
TTGATCATTCAGGGGACCTCTGGAGTTATAGATATAAACTTTGTGGCAGA
TATGACTGATCCAAGCTTACCTCCAAATCCTAGGAAGGCTGTTCTTTATC
GCCCGTCTGCGACACATTTGTTAACGGTTATTGCAACCGTCTGTGAAGAG
CTCCCTCCAAAGAACATTAAGGTATTAATATCTATCGTCCTTAGGGGAAA
GGCTGGGTCCAAAGTAATGTTCCCTCCGGGGGGAAAATTTCCGGGAAGGA
TTCAAGGAAAAACCTTCCAGGCAACAAAAATTGGTTTTTCTCGGAATTCC
CCCCAAAAAAAAAAAAAAAACTTCTAAAACCTTGAAAAATTTCCGGGTAA
AAGGGGGGAAGAAAAAAAAAAAATCCAGAGGGGAGTGGCCTTTAAAAAAA
AAAAATATTATTTTTTGGTGGGTGTTGTGGGGGTGGCCTCCCCTCCGCAG
GG
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