DY262760

Overview
NameDY262760
Unique NameDY262760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262760_ssr52 microsatellite DY262760_ssr52:52..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_DESDG (5'-nucleotidase surE OS=Desulfovibrio desulfuricans (strain G20) GN=surE PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.673e-30
Identity = 81/196 (41.33%), Postives = 115/196 (58.67%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFK 753
            I +TNDDGI APGLR++ + L     +TVQV AP +E+SAV H++T   P+  +    +G     V GTP DC  LG++ AL    PD+V+SGIN G+N G  ++YSGTV+ A EA   G PS+++SYD      N     +AA A   +   I+  +  Q+ P RC LN++LP D+P    KG  L  Q  +++K
Sbjct:    3 IALTNDDGIQAPGLRAMYKALKEAG-HTVQVVAPVTEQSAVGHAVTIALPLRVKIFAENGFQGMGVYGTPTDCVKLGLN-ALLDKKPDIVVSGINAGANVGPDILYSGTVSAATEAAHMGYPSLAVSYD------NFKPDDIAAHARFAV--EIMESMPWQSLPPRCVLNLNLP-DVPMQQCKGLTLCPQTRAVWK 187          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_AQUAE (5'-nucleotidase surE OS=Aquifex aeolicus GN=surE PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.021e-29
Identity = 78/197 (39.59%), Postives = 108/197 (54.82%), Query Frame = 1
Query:  166 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 753
            PT ++ NDDG  +PG+ +L   L S  R  V V APD   S V HS+T+  P+  R  D D  T   + GTPADC  LG    L    PDLV+SGIN G N G  + YSGTV+GA E    G+PS++ S     G+ N+  +   A+ C+ I+  +L    N+  PE  +LN+++P       KG K+T+QG   +K
Sbjct:    2 PTFLLVNDDGYFSPGINALREALKSLGR--VVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTV--IDGTPADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFS---AFGRENIM-FEEIAKVCVDIVKKVL----NEGIPEDTYLNVNIPNLRYEEIKGIKVTRQGKRAYK 186          

HSP 2 Score: 23.483 bits (49), Expect = 1.021e-29
Identity = 13/41 (31.71%), Postives = 22/41 (53.66%), Query Frame = 3
Query:  846 RYIYPIGRRPSVS*GGKRGHIADPDTDWPFLREGYITVTPI 968
            +YI P G+        + G  A+  TD+  +  GY++VTP+
Sbjct:  191 KYIDPYGKPFYWIAAEEFGWHAEEGTDYWAVLNGYVSVTPL 231          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_DESVV (5'-nucleotidase surE OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=surE PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.021e-29
Identity = 77/208 (37.02%), Postives = 118/208 (56.73%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGG 792
            I +TNDDGI APGLR++ + L+    +TV V AP +E+SAV H++T   P+  +    +G   + V GTP DC  LG+S +L    P+LV+SGIN G+N G  ++YSGTV+ A EA   G  +V++SYD      +++ +   A A LP        I     PERC +NI+ P   + + KG ++  Q  +++   W    ++ +GG
Sbjct:    3 IALTNDDGIQAPGLRAIYKALIEAG-HTVDVVAPVTEQSAVGHAVTIAMPLRVKVFHENGFRGHGVYGTPTDCMKLGLS-SLLEHKPELVVSGINAGANVGPDILYSGTVSAATEAAHMGYRAVALSYDSF-RPEDISAHARHAAALLP-------HIEWAGLPERCVVNINYPAVPVESIKGVRVCPQTRAVWH-DWYEHRTDPRGG 199          

HSP 2 Score: 28.4906 bits (62), Expect = 1.021e-29
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 3
Query:  915 PDTDWPFLREGYITVTPIGALSNADTESL 1001
            P TD   L EGYITVTP+      D+E+L
Sbjct:  215 PGTDRALLTEGYITVTPL-RFDFTDSETL 242          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_CARHZ (5'-nucleotidase surE OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=surE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.523e-29
Identity = 91/246 (36.99%), Postives = 129/246 (52.44%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG--VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTSIF------KMGWRRVTSEMQGGKMLSTMT-MDTDSAVTIETDTS-TPLEEDL 876
            I++TNDDGI APG+++L +VL    +Y + V APD EKSA  H IT   P+ A    F    V   +V GTPADC  L V +AL    PDLV+SGIN G N G  V+YSGTV+ A EA  +G+P+++IS      +    +Y  AAE    I   +L  I    +P    LNI++P   +   KG  +T+ G   +      +   R ++     G+ ++     DTD+A     + S TP+  DL
Sbjct:    3 ILLTNDDGIYAPGIKALRQVLEKEGKYELTVVAPDREKSATGHGITVHRPLRAFDITFKNSKVRGVSVDGTPADCVKLAV-EALLDKPPDLVLSGINSGPNLGTDVLYSGTVSAAIEAMINGIPAIAISMGSFAFED--EEYLRAAE----IFARLLPRILEHPWPRDTILNINIPNVPLEEIKGIAITRLGVRKYINVFEERKDPRGLSYYWMSGEAVNYENGQDTDTAALARKEISITPVHFDL 241          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_DESAA (5'-nucleotidase surE OS=Desulfatibacillum alkenivorans (strain AK-01) GN=surE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.342e-29
Identity = 78/192 (40.62%), Postives = 116/192 (60.42%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA-RPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQG 738
            I+VTNDDGI  PGL +L   L   +R  VQV APD E+SA++H+IT   P+ A    + +G+ ++AV+GTPADC  LGV + L    PDLV+SGIN G N G ++ YSGTV+ AREA   G+P++++S          N Y          +  ++A++  +  P+  FLN++LP D+P  +  G ++ +QG
Sbjct:    3 ILVTNDDGIHHPGLAALRDGLARDHR--VQVVAPDRERSAIAHAITLLTPLRAFSQTNGNGIPSWAVNGTPADCVKLGVLE-LLGEKPDLVVSGINPGPNVGVNLNYSGTVSAAREAALLGIPAIAVSVS--------NPYGTHFSDAARFMQDLVADVAERGLPKGVFLNVNLP-DVPMEEIAGVRICRQG 182          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_THEAB (5'-nucleotidase surE OS=Thermosipho africanus (strain TCF52B) GN=surE PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.252e-28
Identity = 84/197 (42.64%), Postives = 117/197 (59.39%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI-SYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIF 750
            I+VTNDDG+ A G+  L R L  + +Y V V AP++E+SAV H+IT R P+  R  D  +    Y+VSGTPADC  +G+   L    PDL+ISGIN G+N G  VVYSGTV+GA E    GVPS+++ SY +         Y  AA+  L      L E   ++ P    LNI++P+ +P +  KG+KLT+Q   ++
Sbjct:    3 ILVTNDDGVTADGILCLARTL--SKKYKVTVVAPETEQSAVGHAITLRLPLWLRKLDINENFEIYSVSGTPADCVKMGIDVVLGEK-PDLLISGINRGNNLGTDVVYSGTVSGALEGAIAGVPSIAVSSYSFENPM-----YETAAKFILD----FLEEFDVRSIPRFTALNINVPS-VPYDQIKGWKLTRQSKRMY 186          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_SYNFM (5'-nucleotidase surE OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=surE PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.252e-28
Identity = 71/192 (36.98%), Postives = 118/192 (61.46%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG-VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQG 738
            I++TNDDG+ A G+ +L   L+    + V V AP++E+SAV H+ITW  P+  +P   +G    +A++GTPADC  + V++ + P  PD+V+SG+NMG+N G +V+YSGTV+ A EA   G+PS+++S D         D++   E     +  +L  +  +  P    LN+++P ++P +  +G K+T+QG
Sbjct:    3 ILLTNDDGVYAKGIETLYLALIE--EHDVTVVAPETEQSAVGHAITWLDPLRVKPVHRNGHFFGHALTGTPADCVKIAVAELMSPP-PDMVVSGVNMGANVGVNVIYSGTVSAATEAAVMGIPSMAVSID----SFQPTDFSAVTE----FVPRLLRIVAKEGLPPGVCLNVNVP-NLPADRIRGVKVTRQG 182          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_CLOB8 (5'-nucleotidase surE OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=surE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.429e-28
Identity = 75/209 (35.89%), Postives = 121/209 (57.89%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVT--AYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQGTSIFKMGWRRVTSEMQG 789
            I++TNDDGI+APG+ +L + +  +  + V + AP  +KSA SHSI+   PI  +    +G+   AY+VSGTPADC  +G+S        +LVISGIN G N G  ++YSGTV+ A E   +G+PS+++S D   GK +  DY+ A +  + +++      + +       LN+++P  +  + KG K+ K G S +K  +  + S  +G
Sbjct:    3 ILITNDDGINAPGIIALAKEI--SKEHKVTIVAPKDQKSASSHSISIHSPIKIKEEFIEGLDCKAYSVSGTPADCTQVGLS--FLKENIELVISGINKGPNVGTDILYSGTVSAAIEGTIYGIPSIAVSMDVEYGKDD-EDYSKAVKWAIKVLDI----AKEEYLKSDVVLNLNIPNFNERDIKGIKVCKIGRSTYKTEYILLESNEEG 202          

HSP 2 Score: 27.335 bits (59), Expect = 1.429e-28
Identity = 10/26 (38.46%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  891 GKRGHIADPDTDWPFLREGYITVTPI 968
            G R  I + ++D  +L +GY+T+TP+
Sbjct:  209 GTRNAIKEEESDLYYLYQGYVTLTPL 234          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_THEM4 (5'-nucleotidase surE OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=surE PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.636e-28
Identity = 82/197 (41.62%), Postives = 114/197 (57.87%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFK 753
            I+VTNDDG+ A G+  L R L  + ++ V V AP++E+SAV H+IT R P+  R  D  +    YAVSGTPADC  +G+   L    PDL+ISGIN G+N G  VVYSGTV+GA E    GVPS++I        S+ +      E     I   L E   ++ P    LNI++P+ +P    KG+KLT+Q   +++
Sbjct:    3 ILVTNDDGVTADGILCLARYL--SKKHEVTVVAPETEQSAVGHAITLRFPLWLRKIDINEEFEIYAVSGTPADCVKMGIDVVL-KEKPDLLISGINRGNNLGTDVVYSGTVSGALEGAIAGVPSIAI--------SSFSFENPLYETAAKFILEFLEEFDVKSIPRFTALNINVPS-VPYGELKGWKLTRQSKRMYE 187          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_SULDN (5'-nucleotidase surE OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=surE PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.136e-28
Identity = 77/179 (43.02%), Postives = 104/179 (58.10%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTY--PERCFLNIDLPTDI 702
            I+VTNDDG +A GLR+LV+ L       V V AP SEKSA  HS+T   P+  R    D        GTP+DC  L +S     S PDL+ISGIN GSN G  + YSGT AGA E   H VPS++IS   +       D+TLA +    +I  ++ +I+N ++  P+R FLN+++P D+
Sbjct:    5 ILVTNDDGYEAKGLRALVKALKELEDVEVMVVAPASEKSACGHSLTLVRPL--RFVGVDDNFFKLDDGTPSDCVYLALSTIYVDSKPDLLISGINRGSNMGEDITYSGTAAGAMEGVLHDVPSIAIS-QVMDFSDPQGDFTLAQK----VIKELVIKIKNGSFPLPQREFLNVNIPPDL 176          
The following BLAST results are available for this feature:
BLAST of DY262760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_DESDG8.673e-3041.335'-nucleotidase surE OS=Desulfovibrio desulfurican... [more]
SURE_AQUAE1.021e-2939.595'-nucleotidase surE OS=Aquifex aeolicus GN=surE P... [more]
SURE_DESVV1.021e-2937.025'-nucleotidase surE OS=Desulfovibrio vulgaris sub... [more]
SURE_CARHZ2.523e-2936.995'-nucleotidase surE OS=Carboxydothermus hydrogeno... [more]
SURE_DESAA7.342e-2940.635'-nucleotidase surE OS=Desulfatibacillum alkenivo... [more]
SURE_THEAB1.252e-2842.645'-nucleotidase surE OS=Thermosipho africanus (str... [more]
SURE_SYNFM1.252e-2836.985'-nucleotidase surE OS=Syntrophobacter fumaroxida... [more]
SURE_CLOB81.429e-2835.895'-nucleotidase surE OS=Clostridium beijerinckii (... [more]
SURE_THEM41.636e-2841.625'-nucleotidase surE OS=Thermosipho melanesiensis ... [more]
SURE_SULDN2.136e-2843.025'-nucleotidase surE OS=Sulfurimonas denitrificans... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DE03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262760 ID=DY262760; Name=DY262760; organism=Citrus clementina; type=EST; length=1242bp
CTCATTTGTTTTCCCCCATCTTAAGCCAAACGCACGACTAAGGACTAACA
ATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGTCTTGGACCGAA
CAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTATTGTT
AACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGGATCGA
CGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAATCGCT
ACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTAGTCAT
AGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTTGATGG
AGTTACCGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATCGTTGG
GTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGC
ATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGGACAGT
TGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTCTATAT
CATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACACTTGCT
GCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATCAGGAA
TCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTACAGATA
TTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCATATTC
AAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAGATGTT
ATCAACAATGACAATGGACACAGATTCAGCAGTTACTATTGAAACAGATA
CATCTACCCCATTGGAAGAAGACCTTCTGTTTCGTAGGGAGGTAAGAGGG
GCCACATTGCTGATCCTGATACAGATTGGCCATTTCTTCGAGAAGGATAT
ATTACCGTCACTCCTATTGGAGCCCTCTCTAATGCAGATACGGAGTCCCT
ACTCTACTTCCAAAGATTGGCTGCAAGTTGGTGGCTGGACCTGAAATCTT
CTTCTGCTTTGTAATGGTAAAGCCATCCCTAGGCTGAAATATGATGAATA
AAGAAGGTCTTGGCTTTTAAAATGGATTAAATGTTTTGAATCTCCCTTTG
GGGTCAAAAAATTTTTTGTGGTCCCCTCGTTTTAAGGGGAACCCCCGCCC
TCCTCGCCCCCCTTGTATTTGGCGGGTTTTTTTTCGGTGTTT
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