DY262846

Overview
NameDY262846
Unique NameDY262846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1209
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: U533_CAEBR (UPF0533 protein CBG04321 OS=Caenorhabditis briggsae GN=CBG04321 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.695e-25
Identity = 54/175 (30.86%), Postives = 83/175 (47.43%), Query Frame = 2
Query:  137 MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILL-LDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALY 658
            +S++     LA RVMRL RP          DP D                  P    ++   K ++++  SR   HD    + +   L+ PQ F  IYLGETF  Y+++ N S   V +V +K E+QT  QR++L        +ES +  G+   ++ H+VKE+G H L+C+  Y
Sbjct:    5 ISNSSTQQLLALRVMRLARPKFAPLDGFSHDPVD------------------PTGFGELLAGKVAEISKESR---HD----LPIGEYLIAPQMFENIYLGETFTFYVNVVNESESNVVNVSLKCELQTSTQRVVLPCSVQDVTIESTKCDGQ---VISHEVKEIGQHILICSVNY 151          

HSP 2 Score: 58.151 bits (139), Expect = 6.695e-25
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  633 IRLCARHCIVMVGERKYLPQFFKFIVSNPLSVRTKVRVVKEIT----FLEACIENHTKSNLYMDQVEFEPSQNWSATML 857
            I +C+ +   + GE  Y  +FFKF VS P+ V+TK    ++      +LEA IEN + SN+++++VE +PSQ++  T +
Sbjct:  144 ILICSVNYKTLSGENMYFRKFFKFPVSKPIDVKTKFYSAEDNANQDVYLEAQIENTSNSNMFLERVELDPSQHYKVTSI 222          
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: U533_CAEEL (UPF0533 protein C56C10.7 OS=Caenorhabditis elegans GN=C56C10.7 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.714e-25
Identity = 53/174 (30.46%), Postives = 80/174 (45.98%), Query Frame = 2
Query:  140 SSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILL-LDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALY 658
            +S+     LA RVMRL RP          DP D                  P    ++   K S+++  SR         + +   L+ PQ F  IYLGETF  Y+++ N S   V  V +K E+QT  QR++L      + +ES +  G+   ++ H+VKE+G H L+C+  Y
Sbjct:    6 ASSSSQQLLALRVMRLARPKFAPVDGFSHDPVD------------------PTGFGELLAGKVSEISKESR-------QDLPIGEYLIAPQMFENIYLGETFTFYVNVVNESEKTVSSVSLKCELQTSTQRVVLPCSVQDATIESSKCEGQ---VISHEVKEIGQHILICSVNY 151          

HSP 2 Score: 56.6102 bits (135), Expect = 8.714e-25
Identity = 29/87 (33.33%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  633 IRLCARHCIVMVGERKYLPQFFKFIVSNPLSVRTKVRVVKEIT----FLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSD 881
            I +C+ +     GE  Y  +FFKF VS P+ V+TK    ++      +LEA IEN + +N+++++VE +PSQ+++ T +  +    D
Sbjct:  144 ILICSVNYKTSNGENMYFRKFFKFPVSKPIDVKTKFYSAEDNANQDVYLEAQIENTSNANMFLEKVELDPSQHYNVTSIAHEDEFGD 230          
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: CE044_DANRE (UPF0533 protein C5orf44 homolog OS=Danio rerio GN=zgc:73187 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 7.866e-20
Identity = 62/168 (36.90%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  158 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 661
            H LA +VMRL +P+L    P+  +  DL    D+F           L+  D +T K               A+++ L  +L LPQ FG I+LGETF SYIS++N S+  V+D+++KA++QT  QR L L  S S V  ++     D ++ H+VKE+G H LVC   Y+
Sbjct:   10 HLLALKVMRLTKPTLFTNMPVTCEDRDL--PGDLF---------LRLMKDDPSTVKG--------------AETLILGEMLTLPQNFGNIFLGETFSSYISVHNDSSQVVKDILVKADLQTSSQR-LNLSASNSAVSELKPECCIDDVIHHEVKEIGTHILVCAVSYT 151          
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: CE044_XENTR (UPF0533 protein C5orf44 homolog OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.027e-19
Identity = 61/168 (36.31%), Postives = 89/168 (52.98%), Query Frame = 2
Query:  158 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 661
            H LA +VMRL +P+L    P+  +  DL    D+F           L+  D +T K               A+++ L  +L LPQ FG I+LGETF SYIS++N S   V+D+ +KA++QT  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+
Sbjct:   10 HLLALKVMRLTKPTLFTNIPVTCEERDL--PGDLFST---------LMKDDPSTVKG--------------AETLMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDIQVKADLQTSSQR-LNLSASTAVVSELKPDSCIDDVIHHEVKEIGTHILVCAVSYT 151          
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: CE044_XENLA (UPF0533 protein C5orf44 homolog OS=Xenopus laevis PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.342e-19
Identity = 61/168 (36.31%), Postives = 89/168 (52.98%), Query Frame = 2
Query:  158 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 661
            H LA +VMRL +P+L    P+  +  DL    D+F           L+  D +T K +++              + L  +L LPQ FG I+LGETF SYIS++N S   V+DV +KA++QT  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+
Sbjct:   10 HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFST---------LMKDDPSTVKGAEI--------------LMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDVQVKADLQTSSQR-LNLSASSAVVADLKPDSCIDDVIHHEVKEIGTHILVCAVSYT 151          
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: CE044_RAT (UPF0533 protein C5orf44 homolog OS=Rattus norvegicus PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.342e-19
Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  158 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGG 670
            H LA +VMRL +P+L    P+  +  DL    D+F+          L+  D +T   +++              + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++KA++QT  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+  G
Sbjct:   10 HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFNQ---------LMKDDPSTVNGAEI--------------LMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQG 154          
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: CE044_MOUSE (UPF0533 protein C5orf44 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.342e-19
Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  158 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGG 670
            H LA +VMRL +P+L    P+  +  DL    D+F+          L+  D +T   +++              + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++KA++QT  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+  G
Sbjct:   10 HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFNQ---------LMKDDPSTVNGAEI--------------LMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQG 154          
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: CE044_PONAB (UPF0533 protein C5orf44 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.904e-19
Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  158 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 661
            H LA +VMRL +P+L    P+  +  DL    D+F+          L+  D +T               + A+ + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++KA++QT  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+
Sbjct:   10 HLLALKVMRLTKPTLFTNIPVTCEERDL--PGDLFNQ---------LMRDDPSTV--------------NGAEVLMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYT 151          
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: CE044_HUMAN (UPF0533 protein C5orf44 OS=Homo sapiens GN=C5orf44 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 3.904e-19
Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  158 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 661
            H LA +VMRL +P+L    P+  +  DL    D+F+          L+  D +T               + A+ + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++KA++QT  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+
Sbjct:   10 HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFNQ---------LMRDDPSTV--------------NGAEVLMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYT 151          
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: CE044_BOVIN (UPF0533 protein C5orf44 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.904e-19
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  158 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 661
            H LA +VMRL +P+L    P+  +  DL    D+F+          L+  D +T   +++              + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++KA++QT  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+
Sbjct:   10 HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFNQ---------LMRDDPSTVNGAEI--------------LMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYT 151          
The following BLAST results are available for this feature:
BLAST of DY262846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
U533_CAEBR6.695e-2530.86UPF0533 protein CBG04321 OS=Caenorhabditis briggsa... [more]
U533_CAEEL8.714e-2530.46UPF0533 protein C56C10.7 OS=Caenorhabditis elegans... [more]
CE044_DANRE7.866e-2036.90UPF0533 protein C5orf44 homolog OS=Danio rerio GN=... [more]
CE044_XENTR1.027e-1936.31UPF0533 protein C5orf44 homolog OS=Xenopus tropica... [more]
CE044_XENLA1.342e-1936.31UPF0533 protein C5orf44 homolog OS=Xenopus laevis ... [more]
CE044_RAT1.342e-1935.09UPF0533 protein C5orf44 homolog OS=Rattus norvegic... [more]
CE044_MOUSE1.342e-1935.09UPF0533 protein C5orf44 homolog OS=Mus musculus PE... [more]
CE044_PONAB3.904e-1935.71UPF0533 protein C5orf44 homolog OS=Pongo abelii PE... [more]
CE044_HUMAN3.904e-1935.71UPF0533 protein C5orf44 OS=Homo sapiens GN=C5orf44... [more]
CE044_BOVIN3.904e-1935.12UPF0533 protein C5orf44 homolog OS=Bos taurus PE=2... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AE02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262846 ID=DY262846; Name=DY262846; organism=Citrus clementina; type=EST; length=1209bp
AGGAGATGCGTCTGGTCTGAGTCTGATTTTCTCCTCCTACTCTTGGCTAA
CTGTAATAAAATTTTACTTCAATTGATTATCATCGTCAATTCATTCAGAT
TGAGTAAAGAGTGGTTGAGTGAGGAGGGGACTGAGGATGAGCTCGACGCC
AGGAACACACTCGCTAGCCTTCAGAGTGATGAGGCTATGTAGGCCGTCGT
TACACGTGGAGCCTCCTCTTCGCGTAGACCCCACCGATCTCTTCATCGGC
GAGGACATCTTCGACGATCCAATCGCCGCTTCCAACCTCCCTCCACTAAT
ATCTAGCGACGTCACCACCAACAAATCCTCCGATCTCACCTATCGCTCTA
GATTCCTCCTCCACGACTCCGCTGATTCCATCGGCCTCTCCGGCCTCCTC
GTCCTCCCCCAAGCCTTCGGGGCTATTTATCTGGGAGAGACGTTTTGTAG
CTACATTAGTATCAACAACAGTTCCACTTTAGAAGTTAGAGATGTTGTTA
TTAAGGCAGAAATTCAAACGGATAAGCAGAGGATCCTCCTTTTGGATACG
TCAAAATCACCTGTTGAATCAATACGAGCGGGCGGACGTTATGATTTCAT
CGTAGAACATGATGTCAAAGAACTCGGAGCTCATACGCTTGTGTGCACGG
CATTGTATAGTGATGGTGGGAGAGCGGAAATATCTTCCACAGTTTTTCAA
GTTCATTGTCTCCAATCCACTTTCAGTTCGGACCAAGGTCCGTGTTGTTA
AGGAAATAACATTTTTAGAGGCATGCATTGAGAATCATACAAAATCAAAC
CTTTATATGGACCAAGTTGAGTTTGAGCCTTCTCAGAATTGGAGTGCAAC
AATGCTTAAAGCTGATGGACCCCATTCTGATTACAATGCCCAAAGTAGAG
AGATATTTAAGTCACCAGTACTCATCAGATCTGGTGGGAGGGATCACAAC
TATCTATATCAGTTAAAAAGGTTGTCACATGGTTTCTTCCTCCCCAGTGG
AAAGTCCAGGGAAGTAATGTTCTTGGGAAACTTTCAAATACATTGGCGTA
ACAAATTTGGGTGAACCTGGTCCCCCTACCGAACCCACAAAATTTTTGGG
CCCACCCTTCCTATACAAGAAAATTGAACCTAAATGTTGGGGGGGGTTCC
CTTCGTTTTGTCGCCTAAAAAAAACCCTTTTTTTGGTTAAATTAAAAACC
TCCAAAACC
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