DY262848

Overview
NameDY262848
Unique NameDY262848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length902
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2368 contig Ccv1_Contig2368:1..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262848 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.450e-38
Identity = 81/194 (41.75%), Postives = 131/194 (67.53%), Query Frame = 2
Query:  149 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELKAR 730
            NQ+  LKFTSK L++Q                     GNMDGARIYA+N+IR++ + +NYLRLASR+DAV +R++T  +M ++  SMANIVKS+E S+   +L+K+++ MD FE+QF +++VQ+ ++E+AM  +T+LSTP  +V+ L+ QVAD++GL V + +      + P+++ ++ + D+L+ RL  LK +
Sbjct:    3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQM-----GSAPSEKVQQGETDELTERLNRLKQK 191          
BLAST of DY262848 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.149e-35
Identity = 80/200 (40.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:  125 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELK 724
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ    +V T      ++D+LS+RLA L+
Sbjct:    1 MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196          
BLAST of DY262848 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.342e-35
Identity = 79/200 (39.50%), Postives = 127/200 (63.50%), Query Frame = 2
Query:  125 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELK 724
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V T      ++D+LS+RLA L+
Sbjct:    1 MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196          
BLAST of DY262848 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.701e-35
Identity = 77/200 (38.50%), Postives = 130/200 (65.00%), Query Frame = 2
Query:  125 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELK 724
            M + EK    + +LKF +K LQR                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VK ++++L + NL+K+S  M+ FE+QF  ++VQ   ME +M+ +T+L+TP+G+V++LM ++AD+ GL++++ LPQ    +V T      ++D+LS+RLA+L+
Sbjct:    1 MSSMEK---HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLAKLR 196          
BLAST of DY262848 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.445e-35
Identity = 78/200 (39.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:  125 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELK 724
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME+ M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V T      ++D+LS+RLA L+
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196          
BLAST of DY262848 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.270e-34
Identity = 78/200 (39.00%), Postives = 127/200 (63.50%), Query Frame = 2
Query:  125 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELK 724
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V T      ++D+LS+RLA L+
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196          
BLAST of DY262848 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.834e-33
Identity = 76/200 (38.00%), Postives = 125/200 (62.50%), Query Frame = 2
Query:  125 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELK 724
            M N EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V        ++D+LS+RLA L+
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGA-SVASTEQDELSQRLARLR 196          
BLAST of DY262848 vs. ExPASy Swiss-Prot
Match: CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.128e-33
Identity = 76/200 (38.00%), Postives = 126/200 (63.00%), Query Frame = 2
Query:  125 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELK 724
            M + EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V++L+ ++AD+ GL++S+ LPQ    +V T      ++D+LS+RLA L+
Sbjct:    1 MSSMEK---HLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVGT-SVASTEQDELSQRLARLR 196          
BLAST of DY262848 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.969e-33
Identity = 75/200 (37.50%), Postives = 126/200 (63.00%), Query Frame = 2
Query:  125 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELK 724
            M + EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V++L+ ++AD+ GL++++ LPQ    +V T      ++D+LS+RLA L+
Sbjct:    1 MSSMEK---NLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVGT-SVASTEQDELSQRLARLR 196          
BLAST of DY262848 vs. ExPASy Swiss-Prot
Match: CHM1A_PONAB (Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.899e-32
Identity = 74/191 (38.74%), Postives = 118/191 (61.78%), Query Frame = 2
Query:  155 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDEDDLSRRLAELK 724
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L+T +LQK+S  MD FE+Q  N++V    ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q P   +   +   +  ED LSRRLA L+
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALR 195          
The following BLAST results are available for this feature:
BLAST of DY262848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CHMP1_DICDI1.450e-3841.75Charged multivesicular body protein 1 OS=Dictyoste... [more]
CHM1B_BOVIN1.149e-3540.00Charged multivesicular body protein 1b OS=Bos taur... [more]
CHM1B_HUMAN3.342e-3539.50Charged multivesicular body protein 1b OS=Homo sap... [more]
CHM1B_DANRE5.701e-3538.50Charged multivesicular body protein 1b OS=Danio re... [more]
CHM1B_CHICK7.445e-3539.00Charged multivesicular body protein 1b OS=Gallus g... [more]
CH1B1_MOUSE1.270e-3439.00Charged multivesicular body protein 1b-1 OS=Mus mu... [more]
CH1B2_MOUSE1.834e-3338.00Charged multivesicular body protein 1b-2 OS=Mus mu... [more]
CHM1B_XENLA3.128e-3338.00Charged multivesicular body protein 1b OS=Xenopus ... [more]
CHM1B_XENTR6.969e-3337.50Charged multivesicular body protein 1b OS=Xenopus ... [more]
CHM1A_PONAB5.899e-3238.74Charged multivesicular body protein 1a OS=Pongo ab... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AE05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262848 ID=DY262848; Name=DY262848; organism=Citrus clementina; type=EST; length=902bp
AAAATAATAGAGGAAGAAAAGGCGAAAGAAGTATCTCAATAACACAAAAA
GTCGTCTTCGATCAAAATCCCCAATTCTTTGAAACCCTTGCTTGATTCAA
TTCTCAGATCCGAAACATTTCGCGATGGGAAACACGGAGAAGCTGTTGAA
TCAGATCATGGACTTGAAATTCACCTCAAAATCTCTTCAACGCCAGGCGA
GAAAATGCGAGAAGGAAGAGAAAGCCGAGAAATTGAAGGTGAAAAAGGCC
ATCGAGAAAGGCAACATGGACGGCGCCAGAATCTACGCCGAGAACTCCAT
CCGCAAGCGCACCGAACAGATGAATTATCTCCGCCTCGCTTCTCGTCTCG
ACGCCGTCGTGGCTCGTCTCGACACCCAGGCCAAAATGACCACCATTAAT
AAGTCCATGGCTAACATCGTCAAGTCCCTTGAATCCTCTCTCGCTACCGG
TAATTTGCAGAAGATGTCAGAGACTATGGACTCATTTGAGAAGCAGTTTG
TGAACATGGAGGTTCAAGCAGAGTTCATGGAGAGTGCTATGGCAGGGTCA
ACCTCATTATCCACACCAGAAGGGGAGGTCAACAGTTTGATGCAACAGGT
TGCTGATGATTATGGACTGGAGGTTTCAGTTGGGCTCCCACAACCGGCTG
CACATGCTGTGCCAACCAAGCAACAAGAGAAAGTTGATGAGGACGATTTA
TCAAGGCGTCTTGCCGAGCTCAAGGCTAGAGGTTAATCTAGAGTTGGCTC
ATTCATATTTGATGTGTAGTCATATATATGGTCTCCAGGATCATGTTAAA
AGTTGGATAAAACTTACTATTTGTAAATTTGACTGAATTTCGATTTGTGA
TTTTATGTACACCTTATGGTTGGTGCCTATGGATGCCGATGCCGGTTATT
TT
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