DY262849

Overview
NameDY262849
Unique NameDY262849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1314
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262849 vs. ExPASy Swiss-Prot
Match: CPRF2_PETCR (Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 4.947e-39
Identity = 113/296 (38.18%), Postives = 148/296 (50.00%), Query Frame = 3 
Query:   78 MNRSQSEWELEKFLQEVTXXXXXXXXXXXXXXXXXXXIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDQYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-DSVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPCF 959
            MNRS SEW  + FLQ+                        S +  S+       D V +    ++     PV   +  PVDS+ Y+AYLK++LDLACAAVAL R + +KP+D ++L++N +QA+  S+L SQ        + HD      K       +  L                                       D  D KR RRML            KQAH+ ELETQ  QLR E+SSLLK LTD++Q+Y+++AV+NR+LKADIET+RAKVKMAEETVKRVTGLNP F
Sbjct:   28 MNRSDSEWAFQSFLQQA-----------------------SALESSQPLP---SDPVPVAGDVKN-----PVEIPANVPVDSEDYQAYLKSRLDLACAAVALTRASSLKPQDSAALLDNGSQASNTSQLVSQVPPK---GSGHDLSKEEDKEALAATATPLLPALQKKSAIQVKSTTSGSSRDHSDDDDELEGETETTRNGDPSDAKRVRRMLSNRESARRSRRRKQAHMTELETQVSQLRVENSSLLKRLTDISQRYNDAAVDNRVLKADIETMRAKVKMAEETVKRVTGLNPMF 289
[Close]
BLAST of DY262849 vs. ExPASy Swiss-Prot
Match: OP2_MAIZE (Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.472e-14
Identity = 38/64 (59.38%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:  747 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 938
            K AHL ELE Q  QL+AE+S LL+ +  +NQKY+++ V+NR+L+AD+ETLRAKVKM E+++KRV
Sbjct:  246 KAAHLKELEDQVAQLKAENSCLLRRIAALNQKYNDANVDNRVLRADMETLRAKVKMGEDSLKRV 309
The following BLAST results are available for this feature:
BLAST of DY262849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CPRF2_PETCR4.947e-3938.18Light-inducible protein CPRF2 OS=Petroselinum cris... [more]
OP2_MAIZE2.472e-1459.38Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AE06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262849 ID=DY262849; Name=DY262849; organism=Citrus clementina; type=EST; length=1314bp
TGTTTTCTGCCGATGATTTCTCTGACTCTTTTTTGTCGTCGCCATCTCCG
CCTCCGGCATCGTTTCATGCTTTGCCGATGAACCGGAGCCAATCGGAATG
GGAGTTGGAGAAGTTTCTACAAGAGGTGACGGTTTCTCCGAGGGCGATTT
CCTCTTCGTCGGCTAGCGACAATTCAGTTCCTGCAGTTATTGGTCCTTCT
GTTATGTCGAAATCAAGGGCTTATGAAATTGGAGATGATGACGTGGTGGA
GATAAAAAAGTCTCATCGAGATCAATCTCTTGACCCACCGGTGATTCCTT
CCTCAACGGCTCCGGTTGATTCCGATCAGTATCGAGCTTATTTAAAAACC
AAACTCGATCTAGCGTGCGCTGCTGTTGCTCTCAGGACAGCGCCTGTGAA
GCCAGAAGATAAATCTTCTTTAATTGAGAATCAAACGCAGGCGGCCAAGC
CTTCTGAGTTGGGATCCCAAGCTATGGCTACCGTCAATGTAAGCACTGCT
CATGATGCGCTAGGAACACACCCTAAGGCTGATTTCAGACCACTTGGCTC
AGCTGACTTACCAGCTGTCCAGGCAAGACCAGCAGCGCAAGTCAGGCAAT
CAACGAGTGGGTCATCGCGAGAAGATTCAGACGATGATGAGCTTGAAGGA
GATACAGAAACCATAGAGGGTTTGGACTCGGTGGATGATAAACGTGCAAG
AAGGATGCTGTCAAATCGAGAGTCAGCAAGACGCTCTAGGAGAAGAAAAC
AAGCACATCTGAATGAATTAGAAACACAGGCTGGTCAATTACGAGCTGAA
CATTCTTCGTTACTAAAAGGTCTGACCGACGTGAACCAGAAATATGATGA
ATCTGCTGTCAATAACAGAATATTGAAAGCTGATATTGAGACATTAAGAG
CAAAGGTGAAAATGGCTGAAGAAACAGTTAAGCGAGTGACTGGGTTGAAT
CCCTGCTTTTAACCCGATCCGATGTGCCCGGTGGTGGGCTGGCATTAATC
CAAGGTCCACTCGAGGCCTCCAGAATGCTACTCATCCAATGCACCCAACC
CCAACCAGTTCTTCCCCAGCAATTCCAGTATTAATACTCCCCCCCCAAAT
CACCAAACTTGGAACGCAGTTTCCCCAATAAAATCCACTTCCTTAGGGTT
GGAAACCCTCAAAGGGTAAAGGGGGGGCAAAAAAAGGAAAAAAACATCTC
CCCTTGCACCCTGCCCGTGGGTTTTAAAACGGTGGCCCCCCGGGGGGGGG
GGGGCCAAAAAAAAATCCCTTCCCCCCTTGGGGGGGGCTGTGTCCCGGGC
GGGGGGGGGGGAAC
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