DY262855

Overview
NameDY262855
Unique NameDY262855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1329
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262855_ssr2 microsatellite DY262855_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262855 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 6.502e-71
Identity = 160/307 (52.12%), Postives = 195/307 (63.52%), Query Frame = 2
Query:  278 LPPHGGVASAF-KMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQA------RYLEADNRDWRTRSTTSG-----QEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGA--GPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFSSDEAGGKKSPLSG-SFETLPGGIEGAEHPRAEI-------RKRMPRKKNGTYGSRTKG---LAGEL 1123
            L PHGG AS   ++GDL  E  ERVRY+R+QLL L+++  +TE IL+++QEIE+E +G+ QSW     N  LQ+Q Q       R+ E DNRDWR R+         +EKS +  +E  E     G+   QF     S++Q A  GP PALIKA+VPWSARRGNLSEKDRVLKTVKGILNKLTPEKFD+LKGQL+DSGITT DILK VI LIF+KAV EPTFCPMYA LCS+LN+ LP F S+E GGK+               EGA+  R EI       ++   R K   +  RT G   L GEL
Sbjct:   40 LRPHGGGASGVSRIGDLHSESRERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRNDSNVQLQTQAQPQVQAQNRFTETDNRDWRARTEKPPAPAVQEEKSWDNIREVKEQYNASGRQQEQFNRQDQSSSQKAQVGPPPALIKADVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLLDSGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSELNDNLPTFPSEEPGGKEITFKRVLLNNCQEAFEGADSLRVEIASLTGPDQEMEKRDKERIFKLRTLGNIRLIGEL 346          
BLAST of DY262855 vs. ExPASy Swiss-Prot
Match: C3H43_ORYSJ (Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.158e-35
Identity = 90/222 (40.54%), Postives = 131/222 (59.01%), Query Frame = 2
Query:  338 HERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEAN----QEKMEFGAHEGQLNSQFASAQISTNQG-------AGPAPA-LIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFSSDE 967
            H+R+ YTR+QLLQL +  ++ +DILK  Q+I  E +GE +  G  AE +++Q+    R+   D+RDW + S  +  E+    N    +E    G  + + N    S+    ++          P  + LIKAEVP S +RG +S KD VLKT+K ILN  +P+ FD+ KGQLI++ I++ DILK VI LIF+K V EP FC  YA LC+ LN+ L PF  ++
Sbjct:  235 HQRISYTRDQLLQLCQNVEVPKDILKFCQDINVELNGEDKISGFGAEKDHVQTPSYKRFDATDSRDWHSWSAQTNWEQKFWDNFSEAKEPYSLGWKQEKFNKPDQSSFHFDSKDQWLKFIKCTPCKSTLIKAEVPLSIQRGIISGKDEVLKTLKSILNTFSPKMFDLQKGQLIETRISSADILKDVINLIFEKVVAEPAFCSTYAQLCTYLNQNLTPFPPED 456          
BLAST of DY262855 vs. ExPASy Swiss-Prot
Match: IF4G2_RABIT (Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.126e-13
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  710 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFSSDEAGGK 979
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E  P F    A G+
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQ 154          
BLAST of DY262855 vs. ExPASy Swiss-Prot
Match: IF4G2_PONAB (Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.126e-13
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  710 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFSSDEAGGK 979
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E  P F    A G+
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQ 154          
BLAST of DY262855 vs. ExPASy Swiss-Prot
Match: IF4G2_MOUSE (Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.126e-13
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  710 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFSSDEAGGK 979
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E  P F    A G+
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQ 154          
BLAST of DY262855 vs. ExPASy Swiss-Prot
Match: IF4G2_HUMAN (Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.126e-13
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  710 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFSSDEAGGK 979
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E  P F    A G+
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQ 154          
BLAST of DY262855 vs. ExPASy Swiss-Prot
Match: IF4G2_BOVIN (Eukaryotic translation initiation factor 4 gamma 2 OS=Bos taurus GN=EIF4G2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.126e-13
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  710 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFSSDEAGGK 979
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E  P F    A G+
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQ 154          
BLAST of DY262855 vs. ExPASy Swiss-Prot
Match: IF4G_DICDI (Eukaryotic translation initiation factor 4 gamma OS=Dictyostelium discoideum GN=eif4g PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.932e-12
Identity = 65/242 (26.86%), Postives = 108/242 (44.63%), Query Frame = 2
Query:  341 ERVRYTREQLLQLK--EVAQLTEDILKIKQEIES-----EFDGEGQSWGGRAENNNL-----------QSQFQARYLEADNRDWRTRSTTS---GQEKSLEAN------------QEKMEFGAHEGQLNSQFASAQIST---NQGAGPAPALIKA----EVPWSARRGN-LSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPD-ILKGVIELIFDKAVLEPTFCPMYALLCSDLNE 940
            E++ Y++E ++ LK   + + T  +  +K +IE+     + +  G   GG  +N N+             Q   +Y    N  +  ++  +   GQ++  + N            Q++++ G     L       Q +T        P    I +    E  W   + N L +  +VL+    ILNK+TPEKFDVL  +L++ GI   + + KG I+LIFDKA+ E  FC MY  LC  + E
Sbjct:  593 EKIVYSKELMMSLKPKSMEEPTGPLKDLKNQIETNTNQNQLNRSGNKIGGNQQNKNMGMGGMNMNPNYPPQMNMKYPPQMNMKYPPKNYNNQVQGQQQQQQGNPNFNKYAPGYQYQQQIQQGMPPPTLQPNPYQPQQATYGITFSRDPVQPSISSQPVNEKRWVPTKVNALDDSQKVLRKANFILNKITPEKFDVLTEELLELGIVDDEKVHKGTIDLIFDKALNESKFCTMYTNLCKKIFE 834          
BLAST of DY262855 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.790e-11
Identity = 56/179 (31.28%), Postives = 81/179 (45.25%), Query Frame = 2
Query:  674 PAPALIKAEVPWSARRGNLSEKDRVL-KTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFS-----------------SDEAGGKKSPLSGSFETLPGGIEGAEHPRAEIRKRMPRKKNGTYGSRTKGLAGELGGKNPFMGEIL 1156
            P   + KAE  +    G ++++++   + +K ILNKLTP+ F+ L  Q+    I     L GVI  IFDKA++EPTFC MYA  C  L+  LP F+                  +   G+K     S     G +E  E  R E R ++ R+  G        L GEL  K     +I+
Sbjct: 1070 PMQVMHKAERKYQV--GTIADEEQAKQRQLKSILNKLTPQNFEKLFEQVKSVNIDNAVTLSGVISQIFDKALMEPTFCEMYADFCFHLSGALPDFNENGEKITFKRLLLNKCQEEFERGEKEEEEASRVAEEGQVEQTEEEREEKRLQVRRRMLGNI-----RLIGELYKKRMLTEKIM 1241          
The following BLAST results are available for this feature:
BLAST of DY262855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
IF41_WHEAT6.502e-7152.12Eukaryotic initiation factor iso-4F subunit p82-34... [more]
C3H43_ORYSJ1.158e-3540.54Zinc finger CCCH domain-containing protein 43 OS=O... [more]
IF4G2_RABIT2.126e-1347.31Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_PONAB2.126e-1347.31Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_MOUSE2.126e-1347.31Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_HUMAN2.126e-1347.31Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_BOVIN2.126e-1347.31Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G_DICDI8.932e-1226.86Eukaryotic translation initiation factor 4 gamma O... [more]
IF4G1_ARATH5.790e-1131.28Eukaryotic translation initiation factor 4G OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AF02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262855 ID=DY262855; Name=DY262855; organism=Citrus clementina; type=EST; length=1329bp
AAAATAAATAAATAAAATTTCAAAATAACATTAATTAAGAATTAAGAATT
AAAAAAAAAAAAAAAACCCCACACACAAATCACAGCCTCTCTTAAAAACC
CTAATTTTGCTCATTTCTCTTTTATCACAACGGAAGCCTTTTTCTGGAGG
TATTATGCAGGCAGCAGATCAGACGGTGATAAGCTTGAGACCCGGTGGCG
GCGGCGGTCCACGTGGCACCAGATTGTTCACTCATCGCTTCGATTCCTCA
TCAACACCCTCGTCTGATTCTCAAACTCTTCCCCCTCATGGCGGCGTCGC
TTCCGCTTTCAAGATGGGGGACTTGCGGTTTGAAGGTCATGAACGTGTTC
GATACACCCGAGAGCAGCTGTTACAACTTAAGGAGGTTGCTCAACTAACT
GAAGACATTTTGAAGATAAAGCAAGAAATTGAGTCTGAGTTTGATGGCGA
AGGTCAAAGCTGGGGTGGTCGTGCAGAAAATAACAATCTGCAATCTCAAT
TCCAAGCTCGTTACTTGGAGGCAGACAATCGTGATTGGCGTACTCGATCA
ACCACCTCTGGACAAGAGAAATCCTTGGAAGCAAATCAAGAAAAGATGGA
ATTTGGTGCTCATGAGGGCCAACTTAATTCCCAGTTCGCAAGTGCTCAAA
TCTCCACTAACCAAGGGGCAGGACCTGCTCCAGCTCTAATTAAGGCTGAA
GTTCCATGGTCAGCAAGACGAGGAAATCTCTCAGAGAAGGATCGTGTTCT
TAAGACTGTTAAAGGAATACTGAATAAATTGACTCCAGAGAAGTTTGATG
TTCTCAAGGGTCAGCTAATAGACTCTGGAATTACAACCCCAGATATTCTG
AAGGGTGTTATTGAACTTATATTTGATAAGGCTGTCTTGGAGCCTACATT
TTGTCCCATGTATGCACTTTTATGCTCTGACCTTAACGAGAAGCTTCCTC
CATTTTCTTCTGATGAAGCTGGTGGGAAAAAATCACCTTTAAGCGGATCT
TTTGAAACATTGCCAGGAGGCATTGAAGGTGCTGAACACCCGAGGGCAGA
AATAAGGAAAAGAATGCCCCGAAAAAAAAATGGAACGTATGGATCAAGAA
CGAAGGGGTTAGCCGGCGAACTTGGGGGAAAAAACCCCTTTATGGGGGAA
ATTTTGAAACAAAAAAAAGGGGGCTGAAAAAAAATTGCCCACCATATTTG
TGTTCGGGGACTTTTTTGAAAAAAAGGGGGGAAAAAACAGGCCCCCCCTG
GAGGGAAAAAAGAGGGGGGGGGAAAAAAATTGTTTTAATTTTTTTTTTTA
AAACCCCCTGTGTGGGAGAAGAAAAACCC
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