DY262859

Overview
NameDY262859
Unique NameDY262859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1205
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262859 vs. ExPASy Swiss-Prot
Match: C3H13_ORYSJ (Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=Os02g0161200 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.040e-45
Identity = 109/276 (39.49%), Postives = 150/276 (54.35%), Query Frame = 3
Query:  144 YKTRICVLYQKGRCSRPTCSFAHGDAELRRP------FRSHHGGPDYRVGDLRDKLDRRLSPQKIYSPGRDTRGR---------NRFRGLSPSRSPENKSDRKRWKKQHLDGPREFSASLKISDGINDRVKERKFTPSDSXXXXXXXXXXXXXDINVLEDRKLQLETNEEEKGQEADILSSRIXXXXXXXXXXXXXXXRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSINIMSDEETTNYHLVDPQNDKQTIPF 926
            YKT++C L+Q+G C+R TCSFAHG  ++RRP      F  H G  DYR GD R ++DRR SP++ +SPGR++RG          +R R  S SRSP  KS+R+  KK   DG    S SL +SD  ND  K+ KF+  D              D+  L D K Q+E   +EK  E   +SS++               R+ SK+KKF+KAH R  + Q+++KRSQAR ++LG  L  D  K G NEE SS+N   +E + N         K++IP+
Sbjct:   11 YKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAGDFRGRIDRRFSPRRRHSPGRESRGHRPLYDRRPSSRERDSSYSRSPSRKSERRHEKKTD-DGETNSSRSLSLSDN-NDEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEKIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLLASDILKRGANEEGSSVNEDLNERSPN----TAATKKRSIPY 280          
BLAST of DY262859 vs. ExPASy Swiss-Prot
Match: C3H40_ARATH (Zinc finger CCCH domain-containing protein 40 OS=Arabidopsis thaliana GN=At3g21810 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 6.589e-43
Identity = 110/290 (37.93%), Postives = 150/290 (51.72%), Query Frame = 3
Query:  144 YKTRICVLYQK-GRCSRPTCSFAHGDAELRRPFRSHHGGPDYRV------------GDLRDKLDRRLSPQKIYSPGRDTRGRNRFRGLSPSRSPENKSDRKRWKKQHLDGPREFSASLKISDGINDRVKERKFTPSDSXXXXXXXXXXXXXDINVLEDRKLQLETNEEEKGQEADILSSRIXXXXXXXXXXXXXXXRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSINIMSDEETTNYHL---VDPQNDKQTIPFPEQKKLHVDRDTT 965
            YKT++C+L+ K G CSRP C+FAHG+AELRRP  S   G  + +             DLRD+L R+ SP++  S  R  R   RF G   S   EN+ D+   + +  D  R+++  LK+ + I DR ++ +                   D+ +L D KL+LE + E K  E DIL+SRI               RI S  KKFVK +NR  + QDDLKRS+ARLQKLG  L        GN  D  ++I+SDEET   +L    DP N+ Q      +KK +VD+ TT
Sbjct:    7 YKTKLCILFNKTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHNMDSDLRDRLGRQFSPERRPSLDRSGRRVQRFSGHDNSMPFENRRDKDYRENRRFDERRDYAGGLKVGNRIEDRAEDGRNKFHGYNNVLEEQLKDVEMDVKMLTDDKLRLEASVERKAHEVDILTSRIQELETQLDREKDECRRITSSSKKFVKEYNRFLRAQDDLKRSEARLQKLGNQLSTYLAGSEGNNRDVGLDIVSDEETNGRNLRTACDPHNELQNTSSLSRKKHYVDQYTT 296          
The following BLAST results are available for this feature:
BLAST of DY262859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H13_ORYSJ7.040e-4539.49Zinc finger CCCH domain-containing protein 13 OS=O... [more]
C3H40_ARATH6.589e-4337.93Zinc finger CCCH domain-containing protein 40 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AF06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262859 ID=DY262859; Name=DY262859; organism=Citrus clementina; type=EST; length=1205bp
CTTTTCTTCTCGTCGACACAGACTGCCACAATTCTTAATTCAACTCTCAG
TTTACTGCAAGCGGCGGGTTCTTTATTTTGCTGCTTGCTGCTCATATTTT
AGTAGCTTTGAGTTGACGATCAAAAATGTTTGAACGGAAGTTCTACAAAA
CGAGGATTTGCGTTTTGTATCAAAAGGGTCGCTGCTCGCGCCCCACTTGC
TCCTTCGCTCATGGAGACGCTGAGCTTCGCCGCCCTTTCCGCTCCCATCA
CGGTGGGCCGGACTACCGAGTTGGTGACTTGAGGGATAAGCTTGACAGAA
GGCTGTCTCCACAGAAAATTTATTCCCCTGGAAGAGATACTAGAGGCCGG
AATAGATTTCGTGGACTTAGCCCTTCGAGGTCCCCTGAGAATAAAAGTGA
TAGAAAACGCTGGAAGAAACAGCACCTTGATGGGCCAAGAGAATTTTCTG
CAAGTCTGAAAATCTCAGATGGGATTAATGATAGAGTTAAAGAACGAAAA
TTTACACCTTCTGATTCCAAAGTTGTTCTTCTGGAGCAGTTAAAAGAAGT
GCAGTTGGATATCAACGTGCTTGAGGACCGCAAACTTCAATTGGAGACTA
ACGAGGAGGAGAAGGGTCAAGAAGCAGATATTCTTTCTTCTAGAATAAAG
GAGCTCGAGACTCAATTGCAGAAAGAGAAAGAGGAATCTAAAAGGATAGC
TTCAAAAATCAAGAAGTTTGTCAAAGCACATAATCGTCACTCACAGATGC
AAGATGATCTTAAGAGGTCACAAGCTCGACTTCAGAAGTTGGGATATCAT
CTTGGCTTAGATGCCACTAAAGTTGGTGGTAATGAAGAGGATTCAAGCAT
CAATATCATGAGTGATGAGGAGACCACTAATTACCATCTAGTCGACCCAC
AGAATGATAAGCAGACTATACCTTTTCCCGAACAGAAAAAACTGCATGTT
GATAGGGATACTACTAATGGATTTGTGCCAAAACCCAATTTAACAAAGAG
GGAAGACAAGTGGCTGAATCTGTTCCCTTAAGGAAGGTTCCTGGGTGGAA
CAACATCCCACTAAACATGGATTCGGTGGGTGATGAAAACCAGCTGAAAG
GGAAAAAAGGTCCCACCCACCTGGTTTTCGGCCCAGGGAAAAAAATGGGA
AAATAACCAAATGCCTTAGCCTTCCCCCAAAACTGGGAAAAAGCTTGCCC
CGGTC
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