DY262944

Overview
NameDY262944
Unique NameDY262944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1015
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262944_ssr780 microsatellite DY262944_ssr780:780..791. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10348 contig Ccv1_Contig10348:542..1556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262944 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.445e-45
Identity = 115/250 (46.00%), Postives = 146/250 (58.40%), Query Frame = 3
Query:    3 DIVNFGEDD-EGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQDVT--MTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQSE 743
            DIVNFGEDD E   +KLEALL AVNNND SH+VHVP G NALSDVLLSTP+FTGD                     ++FGVDPN+DPELALALRVSM                            S+SQ+     TD+++ P  E          D  LL +AIAMS         D NMSE A++D +LALALQ+SM  G + + +    + LL +QAF+SS+L+SLPGVDP DP+VK++L S+ ++S+
Sbjct:  140 DIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVFTGD--EGASGYVSAAAAAAAAGGDFDFGVDPNIDPELALALRVSMEEERARQEAAAKKAADEAGQKDKDGDTASASQETVARTTDKNAEPMDE----------DSALLDQAIAMSV-------GDVNMSEAADEDQDLALALQMSM-SGEESSEATGAGNNLLGNQAFISSVLSSLPGVDPNDPAVKELLASLPDESK 369          
BLAST of DY262944 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.531e-22
Identity = 86/267 (32.21%), Postives = 126/267 (47.19%), Query Frame = 3
Query:    3 DIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSS-TPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHS-----------------DMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQSE 743
            DIV+FG D   N E L A + A+N  D   SHLV VP G + LSD LLS+PI  G+                     +EFGVDPN DPELALALRVSM                                 V+ +   +  ++ A+++  T   +E +LQ A+A+S+ TP        NM+E    + ++A A+Q+SMQD   D+ +                   D S+++ D AF+ S+L +LPGVDP+  +V+D + S+    +
Sbjct:  139 DIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDALLSSPIIQGED---------GMGGAGLGGNVFEFGVDPNEDPELALALRVSMEEQRQRQESEQRRANPDGAPPTGGDAGGGGG--VSGSGPGNEESAGAENEANT---EEAMLQRALALSTETPEDNLPDFANMTE----EEQIAFAMQMSMQDAPDDSVTQQAKRPKTDEANAPMDVDEDYSEVIGDPAFLQSVLENLPGVDPQSEAVRDAVGSLNKDKD 385          
BLAST of DY262944 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.609e-20
Identity = 83/267 (31.09%), Postives = 124/267 (46.44%), Query Frame = 3
Query:    3 DIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQDVTMTDQDSVPASEADDKKKTTK-HDEGLLQEAIAMS--STPSYPSGRDTNMSEVAEDDPELALALQLSMQD----------------GTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 740
            DI+NFGE+ E NTEKL A +  +N  D   SHLV VPPGP+ L+D L+S+PI  G+G                    +EFGVDP+ DPELALALRVSM                               Q+       +  A+EA      T+  D+ LL+  I       P  P     ++S + E++ ++A A+Q+S+Q                  T D     D   ++ D  F+ S+L +LPGVDP + +++ V+ ++ +Q+
Sbjct:  139 DIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS-LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM-------------------------EEQRQRQEEEARRAAAASAAEAGIATPGTEDSDDALLKMTINQQEFGRPGLP-----DLSSMTEEE-QIAYAMQMSLQGTEFSQESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQA 362          
BLAST of DY262944 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.744e-20
Identity = 84/266 (31.58%), Postives = 127/266 (47.74%), Query Frame = 3
Query:    3 DIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQDVTMTDQDSVPASEADDKKKTTK-HDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQ--------DGTKDAPSHSDMSQ---------LLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 740
            DI+NFGE+ E NTEKL A +  +N  D   SHLV VPPGP+ L+D L+S+PI  G+G                    +EFGVDP+ DPELALALRVSM                               Q+       +  A+EA      T+  D+ LL+  I   S   +      ++S + E++ ++A A+Q+S+Q            DA S  D S+         ++ D  F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct:  139 DIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS-LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM-------------------------EEQRQRQEEEARRAAAASAAEAGIATAGTEDSDDALLKMTI---SQQEFGRTGLPDLSSMTEEE-QIAYAMQMSLQGAEFGQAESADMDASSAMDTSEPTKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 363          
BLAST of DY262944 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.681e-20
Identity = 84/266 (31.58%), Postives = 127/266 (47.74%), Query Frame = 3
Query:    3 DIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQDVTMTDQDSVPASEADDKKKTTK-HDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQ--------DGTKDAPSHSDMSQ---------LLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 740
            DI+NFGE+ E NTEKL A +  +N  D   SHLV VPPGP+ L+D L+S+PI  G+G                    +EFGVDP+ DPELALALRVSM                               Q+       +  A+EA      T+  D+ LL+  I   S   +      ++S + E++ ++A A+Q+S+Q            DA S  D S+         ++ D  F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct:  139 DIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS-LADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM-------------------------EEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKMTI---SQQEFGRTGLPDLSSMTEEE-QIAYAMQMSLQGAEFGQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 363          
BLAST of DY262944 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.381e-18
Identity = 81/266 (30.45%), Postives = 123/266 (46.24%), Query Frame = 3
Query:    3 DIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQDVTMTDQDSVPASEADDKKKTTK-HDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQ--------DGTKDAPSHSDMSQ---------LLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 740
            DI+NFGE+ E NTEKL A +  +N  D   SHLV VPPGP+ L+D L+S PI  G+G                    +EFGVDP+ DPELAL LRV M                               Q+       +  A+EA      T+  D+ LL+  I   S   +      ++S + E++ ++  A+Q+S+Q            DA S  D S+         ++ D  F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct:  624 DIINFGEE-EVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS-LADALISFPILAGEG----------GAMMGLGASDFEFGVDPSADPELALVLRVFM-------------------------EEQRQRQEEEARQAAAASAAEAGIATTGTEDSDDALLKMTI---SQQEFGHTGLPDLSSMTEEE-KIVCAMQMSLQGAEFGLAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAVGSLASQA 848          
BLAST of DY262944 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.722e-18
Identity = 80/269 (29.74%), Postives = 120/269 (44.61%), Query Frame = 3
Query:    3 DIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIF-TGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEA---IAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSM-------QDGT-----------KDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQSE 743
            DI+NFGE  E N++KLEA +  VNNND SHL+ VPPGP+ LSD++L +PI  +G G+                    EF ++ + DP+LA+AL++S+                                               +++K+  + +    +EA      S T +  +  ++NM    EDDPELA AL LSM       Q  T           +  P+    S+   DQ F++S L SLPGVDP    +K+ L ++  + E
Sbjct:  140 DIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGPHILSDIILQSPIVESGSGQFGS-----------------EF-INADTDPDLAMALKLSL-----------------------------------------------EEEKQRQERERKAREEANGGSTNSGTTTTTAPTESNMDVNFEDDPELAEALALSMATDKMEVQSSTTNTDSQPPQQQQQPPTDDTSSEAFKDQDFLNSTLNSLPGVDPN--RIKNALENLSKKDE 340          
BLAST of DY262944 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 4.243e-13
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    3 DIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 290
            DI+NFGE ++ NTE L+  +AAVNN   ++SHL+ V PGP  L + + S+PI   +G                     +FGVDP++DPELA+ALR+SM
Sbjct:  140 DIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236          
The following BLAST results are available for this feature:
BLAST of DY262944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSMD4_ARATH1.445e-4546.0026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_DROME6.531e-2232.2126S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_MOUSE1.609e-2031.0926S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_BOVIN2.744e-2031.5826S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_HUMAN4.681e-2031.5826S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PIPSL_HUMAN4.381e-1830.45Putative PIP5K1A and PSMD4-like protein OS=Homo sa... [more]
PSMD4_DICDI5.722e-1829.7426S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_YEAST4.243e-1342.8626S proteasome regulatory subunit RPN10 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BF01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262944 ID=DY262944; Name=DY262944; organism=Citrus clementina; type=EST; length=1015bp
TTGACATTGTCAACTTTGGTGAAGACGATGAGGGGAATACGGAGAAGCTT
GAAGCACTTCTTGCTGCTGTGAACAACAATGACAGTAGCCACCTTGTTCA
CGTTCCTCCTGGTCCAAATGCCCTTTCTGATGTGCTTCTTAGTACGCCTA
TCTTCACTGGGGATGGTGAGGGAGGGAGTGGTTTTGCGGCAGCTGCAGCT
GCTGCTGCAGCCAGTGGTGCTTCTGGTTATGAATTTGGGGTGGACCCCAA
CCTAGATCCTGAACTGGCCCTTGCTCTCAGAGTTTCAATGGAAGAGGAGA
GAGCCAGACAAGAAGCAGCAGCTAAGAGAGCAGCAGAGGAAGCGGCTAAA
AAGGAAAAACAAGGGGAACAGCAATCTAGCTCGCAGGATGTAACTATGAC
TGATCAAGACAGTGTTCCAGCTTCTGAAGCTGATGATAAGAAGAAGACTA
CGAAGCATGACGAGGGTTTGCTACAGGAGGCCATTGCAATGTCATCAACT
CCTAGTTATCCCTCTGGGCGAGATACGAATATGTCAGAGGTAGCTGAAGA
TGATCCAGAGTTGGCATTAGCTCTTCAATTATCCATGCAAGATGGCACGA
AAGACGCACCAAGCCATAGTGACATGAGCCAGTTGTTGGCTGACCAGGCT
TTTGTGTCCTCCATCCTTGCATCGCTTCCAGGGGTTGATCCAGAAGATCC
TTCTGTTAAAGATGTGCTTACTTCCATGCAAAACCAGTCTGAGCCCCAAG
AGAAGAAGGATGAAGACAAGGCGTCAAAAGAGGAGGAGGAGAAATAATTC
TCTGCAGTTGCTTTTCAATGTCAGGTTTAGACTTCTGAATTCACCCAGTT
CATGATCTTTATCAGCTTCTGGGGTACAAGATGTTTCAAATTTGATAAAT
TCTTGTAAATTTCTTACTTTTTGGGAATCTCCAGGTTACTAATATTTGTG
AAAACGGTAGGGATTATTACATGAAGTTTTTATTATCGCAAGTCACTAAC
CTCTTCATTGGGGGC
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