DY262957

Overview
NameDY262957
Unique NameDY262957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1194
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262957_ssr760 microsatellite DY262957_ssr760:760..771. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of DY262957 vs. ExPASy Swiss-Prot
Match: FIBL_GALME (Fibroin light chain OS=Galleria mellonella GN=FIBL PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 5.698e-47
Identity = 108/268 (40.30%), Postives = 153/268 (57.09%), Query Frame = 1
Query:   19 MLPIVLVLLVAQGAFSA-SIPVSVVPRSQVGPIYDNGNAINRYVTNGAFGVVDGGELSVYISNIEEVINDLTNGGSA-SQALALGQTIGTLSELVNGVPGDACEYANLIDTYAGYLSGARNSAALRQALNGYVARLSSSIGAISNYANNPESARFTTXXXXXXXXXXRNYNIEPVWDAILSNANVQSIGPLNEQYCVAKRLYNSFSSLHNNVGAAVTSASIXXXXXXXXXXXXXXXNFLRVLGQGGNXXXXXXXXXXXLRTAVNNVVL 816
            MLP VLVLLVA  A +A S+ +S    + + P   NG  I+  + + AF +VDGG+ ++YI  I++++NDL +     SQ+LA+ Q +  L EL  GVPG++CE A +ID YA  +    NSA L  A+  Y+ RLSS+IG IS  A+NP+S R+++          R+Y  E  WDA+L+NAN   IG +NE+YC A+RLYN+F+S  NNVGAA+T+ ++               N L  +  GGN           L  A  NV L
Sbjct:    1 MLPFVLVLLVATSALAAPSVVISQDNINNIAPRVGNGRPISSALIDRAFEIVDGGDTNIYILTIQQILNDLADQPDGLSQSLAVTQAVAALGELATGVPGNSCEAAAVIDAYANSVRTGDNSA-LSIAVANYINRLSSNIGLISQLASNPDSLRYSSGPAGNCAGGGRSYQFEAAWDAVLNNANPYQIGLINEEYCAARRLYNAFNSRSNNVGAAITAGAVVAQTQAAQIILPSLVNVLSAVAAGGNVAGAAAQAGQALANAAANVQL 267          
BLAST of DY262957 vs. ExPASy Swiss-Prot
Match: FIBL_BOMMO (Fibroin light chain OS=Bombyx mori GN=FIBL PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.266e-30
Identity = 84/248 (33.87%), Postives = 134/248 (54.03%), Query Frame = 1
Query:   19 MLPIVLVLLVAQGAFSA-SIPVSVVPRSQVGPIYDNGNAINRYVTNGAFGVVDGGELSVYISNIEEVINDLTNGGS-ASQALALGQTIGTLSELVNGVPGDACEYANLIDTYA-GYLSGARNSAALRQALNGYVARLSSSIGAISNYANNPESARFTTXXXXXXXXXXRNYNIEPVWDAILSNANVQSIGPLNEQYCVAKRLYNSFSSLHNNVGAAVTSASIXXXXXXXXXXXXXXXNFLRVLGQGGN 753
            M PI LVLLVA  A++A S+ ++    +++    D+G A +  V + A+  VD  + S+ I N++E++ D+ + G  ASQA A+ QT G ++ L  G+PGDAC  AN+I++Y  G  SG  N A  RQ+L  +   +  ++  I+    NP   R++           R Y+ E  WDAIL++++      LNE+YC+ KRLYNS +S  NN+ A +T+  +               + LR +G G +
Sbjct:    1 MKPIFLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASS--VISRAWDYVDDTDKSIAILNVQEILKDMASQGDYASQASAVAQTAGIIAHLSAGIPGDACAAANVINSYTDGVRSG--NFAGFRQSLGPFFGHVGQNLNLINQLVINPGQLRYSVGPALGCAGGGRIYDFEAAWDAILASSDSSF---LNEEYCIVKRLYNSRNSQSNNIAAYITAHLLPPVAQVFHQSAGSITDLLRGVGNGND 241          
The following BLAST results are available for this feature:
BLAST of DY262957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FIBL_GALME5.698e-4740.30Fibroin light chain OS=Galleria mellonella GN=FIBL... [more]
FIBL_BOMMO8.266e-3033.87Fibroin light chain OS=Bombyx mori GN=FIBL PE=1 SV... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BG03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262957 ID=DY262957; Name=DY262957; organism=Citrus clementina; type=EST; length=1194bp
CCGAAATAGACCATCAAAATGCTGCCCATTGTTTTGGTACTGTTGGTCGC
TCAAGGCGCGTTCAGCGCTTCCATCCCAGTCAGCGTCGTGCCTCGCTCGC
AGGTCGGCCCCATCTACGACAATGGCAACGCTATTAACCGGTATGTAACA
AACGGAGCTTTCGGCGTCGTCGACGGCGGAGAGCTCAGCGTCTACATTTC
TAACATTGAAGAGGTGATCAACGACTTGACCAACGGAGGATCTGCAAGCC
AGGCGCTCGCTCTTGGTCAGACCATCGGTACACTTTCAGAGCTCGTCAAC
GGCGTCCCCGGAGATGCCTGCGAATACGCTAACCTCATCGATACCTACGC
CGGCTACCTGAGCGGCGCTCGTAACTCCGCCGCTTTGCGTCAGGCCCTCA
ACGGGTACGTCGCCCGGCTCTCCAGCAGCATCGGCGCCATCTCCAACTAC
GCCAACAACCCTGAAAGTGCTAGATTCACCACCGGATCATCAAGTGGATG
CGCCGCTGGAGGAAGGAACTACAACATCGAGCCAGTCTGGGACGCCATCC
TCAGCAACGCTAACGTTCAGTCCATCGGACCACTGAACGAGCAATACTGC
GTGGCCAAGCGCCTGTACAACTCATTCAGCTCCCTGCACAACAACGTGGG
AGCCGCCGTGACCAGCGCCTCCATCCCCCCCGTGGCCCAGCTCGTCCAGC
AAGCCGCTGCTCCACTTGCTAACTTCCTGAGAGTCCTCGGCCAAGGTGGA
AACGCGTCAGCCGCCGCCGCCTCCGCGCAAGCTGCCCTCAGAACCGCCGT
CAACAACGTCGTCTTGTAAACGCAAACAATTTGACACCACCATATAATAT
AGTATCCCTATATACACCTCATATACAAGAAAAAACACCAATAAAACTGT
GACGATGATGCAAAACTGAACATTAATACTGGCTAATAAAGTCTATTTGC
TCAACGATTCATTTATATATGTATTAATATGGGGTGATAACAATGGCGGT
TAGCGCCGAATCCCTTTAAAAAATTAATAAAAATGGAACTCTTTATTAAT
TTTATTCCAAAAAACTTTTTTATTTCCAAAACCTTTACAACCGGCTTTTT
CTTCCCGGGACAACCAAAATGGTTTTTGTTTTTTAAAAAAAAAAGGTTTT
TTTTTTTTTTTTAAATTTAAAAAAAAAAGTCCCAAAAGTTTCCC
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