DY262959

Overview
NameDY262959
Unique NameDY262959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1354
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262959 vs. ExPASy Swiss-Prot
Match: QRT3_ARATH (Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 1.580e-96
Identity = 181/277 (65.34%), Postives = 208/277 (75.09%), Query Frame = 2 
Query:  167 SGRADHFHEKVRQMQEFKASFSRRDLXXXXXXXXXXXXXXQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLXXXXXXXXYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARF-TSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGHDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKPQDFGGLAL 994
            SG        + +MQ  KAS  RR+L              Q   GPRVY VISYGADPTGK DST+AILKA+ +AF+GP  G LM+GI++LGGA I L+GG+YLIS+PLR P AG GNL+I GGTLRAS+DFP D YLI+L        Y +EYITL DL+ D NYRGGAI+VINSLRTSIDNCYI RF  +NGILV+SGHETYIRNSFLGQHITAGGD GER+F+GTAINLMG+DNAVTD VIFSA +G+MVSGQAN  SGVHCYNK   FGG  +
Sbjct:   31 SGSMSPHDRALAEMQALKASLVRRNLPALVSPPPTPP---QAVPGPRVYQVISYGADPTGKLDSTDAILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTLRASNDFPVDRYLIELKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVTDTVIFSARIGVMVSGQANLLSGVHCYNKATGFGGTGI 304
The following BLAST results are available for this feature:
BLAST of DY262959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QRT3_ARATH1.580e-9665.34Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BG05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262959 ID=DY262959; Name=DY262959; organism=Citrus clementina; type=EST; length=1354bp
TTTCTTTCACTCTTTTGACGTGAAGGAAGTGAAGAGAAAGAGGACTTGGA
GTTTTAAAACAATGGCTAGGAAAACCCTAGGTTTACTTTCTTTGATGACA
GGCTTGGCCAGCCTGATCATCATGCATGCTTACGGCGAATCTGTCCCTGT
AACCACTCCTTTTTCCAGTGGCCGTGCCGACCATTTTCATGAAAAAGTAC
GCCAAATGCAAGAGTTTAAGGCCTCCTTTAGTCGTCGTGATTTGGCAGCT
GCAGCTACTCCTGGCTACGCTCCTGCTCCTTCTCCTCAGGTTACGTCCGG
GCCACGTGTGTACGGGGTGATATCATACGGTGCAGATCCCACGGGGAAAT
CAGACAGCACGGAAGCTATTCTGAAAGCACTTTCTGATGCATTTAATGGG
CCCAGGGAAGGGTCTTTGATGGAGGGCATTTCTAATCTCGGTGGTGCAGA
GATTCATCTTGAAGGTGGGAATTACTTGATCAGCAAGCCTCTGCGGTTGC
CGGATGCCGGCGTAGGGAATCTTATGATTCATGGAGGCACACTACGAGCC
TCAGATGATTTTCCAACCGATGGCTATCTGATTGATTTGTCTGCTTCAAA
ATCTTCGTCATCATATAACTATGAGTACATAACGCTAGAAGACCTGATGT
TTGATTCAAACTACAGGGGAGGGGCAATTTCGGTCATCAATTCCCTTAGG
ACTAGCATAGACAATTGCTACATTGCACGTTTTACCTCCAACGGCATTTT
AGTCCAGAGCGGGCACGAAACCTACATCCGGAACTCGTTCCTCGGGCAGC
ACATCACCGCCGGTGGTGATCCGGGTGAGCGGAACTTTACAGGCACGGCA
ATTAACCTAATGGGGCACGACAATGCTGTTACGGACGTGGTAATTTTTTC
GGCTGCCGTAGGGATAATGGTTTCAGGTCAAGCCAACACATTTTCCGGGG
TGCATTGCTATAACAAGCCACAGGATTTTGGCGGCCTGGCATTAACTTGA
ACCTGCCAGGTAACCACAAACTAGGATCGTGAATTCTAACCTGGATTAAC
CAGGAAATTGTTGTTGAGGAACCCCGGGCGCTTTCACATTCTCAAGCATT
TTCTTCCTTGGGGAAGGCTTTTATGTGTTTGAAAATCTTAAAACGGGGGT
CCCCAAAAGGGGGTAAAATTTTTCAAACCACTGTTTTTTCCGGCCAAAAA
AAACAACGGGGTGTAAAAAATCCTTATAATTTGATTAAATATCCACAAGG
GGAAGCTTTCTAAAACAAAAAATTTTTTAAAATTTTTTTTTTTGTTGTTT
AAAAAAGAAACAACGTGTTTTCTATAAAGGGGAAGAAAGAACACAAACAA
AAGG
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