DY263042

Overview
NameDY263042
Unique NameDY263042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1355
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263042_ssr89 microsatellite DY263042_ssr89:89..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY263042 vs. ExPASy Swiss-Prot
Match: AAPC_CENCI (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 463.381 bits (1191), Expect = 1.416e-129
Identity = 219/281 (77.94%), Postives = 246/281 (87.54%), Query Frame = 2
Query:  149 EFCKGNNGLDKIVLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASHGSLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAVEKPITLKP---WGG 982
            E  K  +GL+K+VLR +R   AE+YLYGG VTSWKND+GEELLF+SSKA FKPPKAIRGGIPIC PQF +HG+LE HGFARNRFWSID DPP  P N + KA++DLILRP+EEDLKIWPHSFEFRLRVAL P GDL L SR+RNT+TDG+PFS+TFAYHTYF VSDISEVRVEGLET+DYLDNL+ KERFTEQGDAI FESEVDK+YL+ P+KIAI+DHEKK+TFV+ K+GLPDAVVWNPWDKKAKAM DFGD EYK+MLCVE AAVEKPITLKP   W G
Sbjct:   25 ELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAIKAFVDLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETMDYLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAKAMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRG 305          
BLAST of DY263042 vs. ExPASy Swiss-Prot
Match: YMY9_YEAST (Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae GN=YMR099C PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 9.139e-28
Identity = 89/268 (33.21%), Postives = 128/268 (47.76%), Query Frame = 2
Query:  206 SSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASHGS------LESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRP---SEEDLKIWPHSFEFRLRVALTPGGDLMLIS-RVRNTSTDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKK-RTFVIRKDGLPDAVVWNPWDKKAKAMADFGDDE-YKHMLCVEAAAVEKPITLKP 973
            +S  +  YG  V SWK    EE L++S+ A     K +RGGIP+ FP F  + +      L  HG ARN  W         P        +   L+P   + E  K+WP  +   L V L  G D +  +  V NTS+  K   F + +HTYF + DI    V  L  +   D L  KE + ++   +TF  E D IY +   + AI   +K  +   +++  LPD VVWNPW +K++ MADF     Y+ M+C+E   V   I+L P
Sbjct:   20 TSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPPT------VQFGLKPEIANPELTKLWPMDYLLILTVEL--GSDYLKTAIEVENTSSS-KELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAP 276          
BLAST of DY263042 vs. ExPASy Swiss-Prot
Match: YEAD_ECOLI (Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.536e-27
Identity = 91/281 (32.38%), Postives = 130/281 (46.26%), Query Frame = 2
Query:  113 FKIMSTEKFLPVEFCKGNNGLDKIVLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQF--ASHGSLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEF--RLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAA 943
            F +   E+  PV   +  + LD IV+   +   A   L G H+ SWK    EE+L++S+   FK   AIRGG+P+C+P F  A+   L +HGFARN  W++ +         +    +   L  SEE  K WPH F      RV  T   DL          + G+ F  T A HTYF+V DI++V V GL    ++D + + +         TF    D++YL+      I D    R   +      + V WNP    + +M D  DD YK  +CVE A
Sbjct:    6 FALPVIEQISPVLSRRKLDELDLIVVDHPQ-VKASFALQGAHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLPWTLKSH-----HEDADGVALTFELTQSEETKKFWPHDFTLLAHFRVGKTCEIDL---------ESHGE-FETTSALHTYFNVGDIAKVSVSGLGD-RFIDKVNDAKENVLTDGIQTFPDRTDRVYLNPQDCSVINDEALNRIIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYKTFVCVETA 269          
BLAST of DY263042 vs. ExPASy Swiss-Prot
Match: Y1317_HAEIN (Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae GN=HI1317 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.617e-16
Identity = 69/237 (29.11%), Postives = 102/237 (43.04%), Query Frame = 2
Query:  266 EELLFVSSKATFKPPKAIRGGIPICFPQFASHGSLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLI-SRVRNTSTDGKPFSFTF--------AYHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV 949
            +++L++S    FK   AIRGG+PIC+P F       +HG AR R W +            S  YI +                  ++R+      DL +I ++V    TD    +FT         A HTYF++ DI++V V+GL    +    Q +E              VD IY +   +  ILD    RT  +        V+WNPW KK   M++ G   Y+ MLC+E A +
Sbjct:   53 QDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVKQ-PAHGTARIRLWQL------------SHYYISV-----------------HKVRLEFELFSDLNIIEAKVSMVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCFNSLNQQQENVPSPRH---ISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHKKTSGMSETG---YQKMLCLETARI 253          
The following BLAST results are available for this feature:
BLAST of DY263042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AAPC_CENCI1.416e-12977.94Putative glucose-6-phosphate 1-epimerase OS=Cenchr... [more]
YMY9_YEAST9.139e-2833.21Glucose-6-phosphate 1-epimerase OS=Saccharomyces c... [more]
YEAD_ECOLI4.536e-2732.38Putative glucose-6-phosphate 1-epimerase OS=Escher... [more]
Y1317_HAEIN1.617e-1629.11Putative glucose-6-phosphate 1-epimerase OS=Haemop... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10CF06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263042 ID=DY263042; Name=DY263042; organism=Citrus clementina; type=EST; length=1355bp
CTGAAGTGAGCTAACACTAAGTGAGAGAGATTTCATTTTCATATCGAATG
CTGTGAATTTTCACATCAAACGAAGAGTAGAAAATCTTGGCGGCGGCGGC
GGCGGCAGCGGCTTCAAAATCATGTCGACGGAGAAGTTTCTTCCAGTTGA
GTTCTGCAAGGGCAATAACGGCCTCGACAAGATCGTTCTCCGCGAGTCAC
GCGGCAGCTCCGCTGAGGTGTATTTGTACGGGGGTCATGTGACGTCTTGG
AAGAATGATCATGGAGAGGAATTGCTTTTTGTCAGTAGTAAGGCTACATT
CAAGCCTCCCAAAGCGATTCGCGGAGGAATTCCAATCTGCTTTCCTCAGT
TTGCAAGTCATGGCTCTCTGGAGTCGCATGGGTTTGCTAGAAATCGGTTT
TGGAGTATTGACACTGACCCGCCTGCTTTTCCAACTAATTCCTCGAGTAA
GGCTTATATTGATTTGATACTAAGGCCCTCGGAAGAAGATCTGAAGATCT
GGCCTCACAGTTTTGAGTTCCGTCTCAGGGTAGCTTTGACTCCTGGTGGT
GATCTGATGTTGATCTCTCGCGTTAGGAATACTAGCACTGATGGAAAGCC
ATTTTCGTTCACATTTGCATATCATACCTATTTCTCTGTTTCAGACATCA
GTGAAGTTCGTGTTGAAGGATTGGAGACACTGGATTACCTCGACAACTTG
CAGAATAAGGAGCGTTTTACTGAACAAGGGGATGCAATAACATTTGAATC
AGAAGTGGACAAGATATACCTCAGTACTCCTACAAAGATTGCAATTCTGG
ATCATGAAAAGAAGAGAACGTTTGTCATTCGTAAAGATGGGCTTCCAGAT
GCTGTGGTGTGGAATCCATGGGATAAGAAAGCAAAAGCTATGGCTGATTT
TGGGGATGATGAGTATAAGCATATGTTGTGCGTGGAAGCAGCTGCTGTTG
AAAAACCGATTACATTGAAACCTTGGGGAGGAATGGAAAGGAAGGCTGGG
AACTTTCTGGTGTTCCGTCTAGTTTATGGAATGGGGGAACTTGATTCCCA
GAAAGTTTCCCCCAGCAACTGAAGGGTCCATCAATTGGGGCAAAATTCGG
GACAGGGAAACCCGAATTGGTTGCCGCCACCCGGTGGGATGGGATGTGAG
GCGTGCGCCAATAATTTTTGTTTTTTTTCCCGGGGGAATTTCCATTAATC
GGGGCCAAAAAAAAGGGGATTCTGGGGAATAAAAAGGGGGGTGGGAAAAA
AAATGGTAACCCCTTAAAAACAAAAAAAAGGGGTGTGAAAAGAAAGGGAG
GGGGAATTAATACCCTCTCGCGGGTTTGGGGTGGTCCCAAAAAGGAAAAA
GACAA
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