DY263043

Overview
NameDY263043
Unique NameDY263043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1321
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 8.947e-89
Identity = 158/251 (62.95%), Postives = 185/251 (73.71%), Query Frame = 3
Query:  342 CIFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQN 1094
            C+FDV  +GAVGDGS                VE+GVVLAP   VFKITSTIFSGPCKP LVFQLDGVLMPPDGP+ WP+ D++ QWLVFY+LD  TF+GKGT+EGNGQ WWDLPCKPHRGP+GS+SSGPC SP +IRFFMS+N+ V GL IQNSPQFHMKFDGC+GV+I+++ ISSPKLSPNTDGIH+ NT+SVGIY    +   +   +  G    DI  V  G SHGI  G+ G  NSQA V  I  +N
Sbjct:   78 CVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWDLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRN 328          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 5.152e-36
Identity = 89/259 (34.36%), Postives = 129/259 (49.81%), Query Frame = 3
Query:  345 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQA--------GVPKIKSQNG 1097
            IF+V  YGAVGDG                   + ++L P +  F + +  F+GPC+P   F++DG++     P +W    + + WL F KL   T  GKG I+G G+ WW   CK     NG       D P  I+F  S+ L++ GL + NSP+FH+ F  CEGV I  +SI++P+ SPNTDGI I  +K+  +      T  +   +  G+    I ++  G  HGI  G+ G  NS+A        G   I +QNG
Sbjct:   58 IFNVEKYGAVGDGKHDCTEAFSTAWQAACKKPSAMLLVPGNKKFVVNNLFFNGPCQPHFTFKVDGIIAAYQNPASWK---NNRIWLQFAKLTGFTLMGKGVIDGQGKQWWAGQCK---WVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTGSSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNG 310          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.657e-34
Identity = 86/246 (34.96%), Postives = 121/246 (49.19%), Query Frame = 3
Query:  345 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKI 1082
            +F+V  YGAVGDG                   + V+L P++  F + + +F GPC+P L F++DG ++    P  W  +   K WL F +L D    G G I+G GQ WW   CK     NG T     + P  I+   S ++ V  LT+ NSP+FH+ F  CEGV I  L I +P+ SPNTDGI I  +K   I      T  +   +  G+    I ++  G  HGI  G+ G  NS+A V  +
Sbjct:   58 VFNVEQYGAVGDGKHDSTEAFATTWNAACKKASAVLLVPANKKFFVNNLVFRGPCQPHLSFKVDGTIVAQPDPARWKNS---KIWLQFAQLTDFNLMGTGVIDGQGQQWWAGQCKV---VNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTGSSNITIKDLICGPGHGISIGSLGRDNSRAEVSHV 297          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 6.517e-31
Identity = 79/246 (32.11%), Postives = 123/246 (50.00%), Query Frame = 3
Query:  351 DVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPS-DYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPC-DSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKI 1082
            +V D+GA GDG                   + V+L P  +Y+ +  S  FSGPCK  L  Q+ G +   D    + K    + WLVF  + ++   G GTI GNG+ WW   CK ++         PC D+P  + F+ S +++V  L I+N+ Q H+ FD C  V    L +++P+ SPNTDGIH+  T+++ I      T  +   +  G++K  + ++  G  HGI  G+ G  NS+A V  +
Sbjct:   91 NVDDFGAKGDGRDDTKAFEKAWKAACSSTSSAVLLVPKKNYLVRPIS--FSGPCKSGLTMQIYGTIEASDDRSDYRK--DGRHWLVFDSVQNLRVEGGGTINGNGKIWWQNSCKTNKAL-------PCKDAPTALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRKVRVNDITCGPGHGISIGSLGYGNSEAHVSDV 325          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 8.511e-31
Identity = 83/259 (32.05%), Postives = 120/259 (46.33%), Query Frame = 3
Query:  345 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQA--------GVPKIKSQNG 1097
            +F+V  YGAVGDG                   + V L P++  F + + +F GPC+P   F++DG +     P  W  +   K W+ F +L D    G G I+G G  WW   CK     NG T       P  I+   S ++ V  LT+ NSP+FH+ F  C+GV I  + I +P+ SPNTDGI I  +K   I      T  +   +  G+    I ++  G  HG+  G+ G  NS++        G   I +QNG
Sbjct:   59 VFNVEHYGAVGDGKHDSTDAFEKTWNAACNKLSAVFLVPANKKFVVNNLVFYGPCQPHFSFKVDGTIAAYPDPAKWKNS---KIWMHFARLTDFNLMGTGVIDGQGNRWWSDQCKTI---NGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTGSSNITIKDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNG 311          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.112e-30
Identity = 79/256 (30.86%), Postives = 123/256 (48.05%), Query Frame = 3
Query:  339 DCIFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDS-PALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQNGNI 1103
            D    V D+GA GDG+                    V++ P +  + +    FSGPCK  L  ++ G +        W    +RK+W+ F  + ++T  G GT  GNG+ WWD  CK  +       S PC S P  + F    NL+VS L+I++S + H+ FD C+ V+   L +++P+ SPNTDGIHI  T+ + +      T  +   ++ G++      +  G  HGI  G+ G  NS+A V  +    GN+
Sbjct:   82 DTDISVDDFGARGDGTDDTKAFEKAWKDACS--SGSVLIVPENKNYLLKQITFSGPCKSDLRVKIRGTIEASSDQSDWV-GHNRKRWIEFEDISNLTLEGGGTSNGNGETWWDSSCKRKK-------SLPCKSAPTALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESGSKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNL 327          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.150e-27
Identity = 68/205 (33.17%), Postives = 100/205 (48.78%), Query Frame = 3
Query:  450 VLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPC-DSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNS 1061
            +L P +Y   +     SGPCK RL  Q+ G ++ P+ PD W   + RK WL F+ L  +T  G GT+ G GQ WW+  CK +        S PC  +P  + F    N+ V  L + +S Q H+    C  V I  L + +P  SPNTDGIHI  ++ + I     +T  +   + + + +  I  +  G  HGI  G+ G   S
Sbjct:   88 ILVPENYTCLLRPIDLSGPCKARLTLQISGTIIAPNDPDVWEGLNRRK-WLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNH-------SNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKS 284          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.244e-26
Identity = 73/239 (30.54%), Postives = 112/239 (46.86%), Query Frame = 3
Query:  354 VRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDS--PALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQ 1064
            V D+GA G+G+                  A V++ P    + +    FSGPCK +L  Q+ G +   +    +   D    WL+F  + ++   G GTI GNG  WW   CK    P       PC +  P  + F   +NLVV  L IQ++ Q H+ F  C  V    L++++P+ SPNTDGIH+ NT+++ I      T  +   +  G+Q+    ++  G  HGI  G+ G   S+
Sbjct:  101 VDDFGAKGNGADDTQAFVKAWKAACSSSGAMVLVVPQKN-YLVRPIEFSGPCKSQLTLQIYGTIEASEDRSIYKDID---HWLIFDNVQNLLVVGPGTINGNGNIWWKNSCKIKPQP-------PCGTYAPTAVTFNRCNNLVVKNLNIQDAQQIHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSGSQRVQATDITCGPGHGISIGSLGEDGSE 328          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.837e-25
Identity = 73/255 (28.63%), Postives = 114/255 (44.71%), Query Frame = 3
Query:  345 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGV-VLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPC-DSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQNGNI 1103
            + +V  +GA GDG                     V  + P +  + +    FSGPC+  +  ++ G L   +          R+ W+ F  + ++   G GTI GNGQ WW   CK ++       S PC D+P  + F+   NL V+ L  +N+ Q H+KF+ C  V+   L I++   SPNTDG+H+ NT+ + I      T  +   +  G+Q      +  G  HGI  G+ G  NS+A V  +      I
Sbjct:   75 VINVLSFGAKGDGKTYDNIAFEQAWNEACSSRTPVQFVVPKNKNYLLKQITFSGPCRSSISVKIFGSL---EASSKISDYKDRRLWIAFDSVQNLVVGGGGTINGNGQVWWPSSCKINK-------SLPCRDAPTALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSGSQNVQATNITCGPGHGISIGSLGSGNSEAYVSNVTVNEAKI 319          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 6.979e-25
Identity = 70/247 (28.34%), Postives = 118/247 (47.77%), Query Frame = 3
Query:  348 FDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLV-FQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPC-DSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKI 1082
            F+V  +GA  +G+                     ++AP +  + + +  FSGPCK  L+ F++ G +   + P  + +   R+ W+VF  ++++   G G I+GNG  WW   CK +          PC  +P  + F   +NL VS + ++N+ Q H+ F  C+ V    L ++SP  SPNTDGIH+  T+++ I      T  +   +  G++      +  G  HGI  G+ G  NS+A V  +
Sbjct:   71 FNVNTFGAKANGNDDSKAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTFSGPCKSSLIIFKIYGRIEAWENPSDYKE---RRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSCKIN-------PQLPCLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSEAYVSNV 307          
The following BLAST results are available for this feature:
BLAST of DY263043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PGLR4_ARATH8.947e-8962.95Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
PGLR2_CRYJA5.152e-3634.36Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
PGLR2_CHAOB1.657e-3434.96Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR_ACTDE6.517e-3132.11Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1[more]
PGLR2_JUNAS8.511e-3132.05Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR_PERAE1.112e-3030.86Polygalacturonase OS=Persea americana PE=2 SV=1[more]
PGLR5_ARATH1.150e-2733.17Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
PGLR_MALDO8.244e-2630.54Polygalacturonase OS=Malus domestica PE=2 SV=1[more]
PGLR_SOLLC1.837e-2528.63Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2... [more]
QRT2_ARATH6.979e-2528.34Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CF07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263043 ID=DY263043; Name=DY263043; organism=Citrus clementina; type=EST; length=1321bp
CCTCTGCCTCTCACTTCATTCTTTTAATTCATTCTTTATTCAGAATTTTT
CCTGTGAAGTAACTTTGACACATTCTCCATTTTTCTTGTTTTATTTTCCT
GAAGAAATTGCATTCAATGGAGAGTATTCGGGAGCTGTTACTAATTCTAC
TAGCAGTGATTCTTTTGGTACAAAATTTAAGCAATGTGGAAGCAAGGTAC
CATCATCACAAGAAACAGAAAAACAAAGGCTCCACTGTTCCTCCCCCGGC
TTCTCCAGAGAATCCTGTCTCTTCATCACCTTCATATTCTCCATCAGTCC
CCTCAGACCCTTATCCGAATGATCCAGTGAATTCCACTGACTGCATTTTT
GATGTAAGAGATTACGGGGCAGTTGGTGATGGCTCTGCCGATGACACCGC
TGCTTTCAGGGCTGCATGGAAAGCAGCCTGTGCTGTAGAAGCAGGGGTTG
TTCTGGCTCCTTCAGATTATGTTTTCAAAATCACTTCAACAATTTTCTCA
GGGCCGTGCAAGCCAAGACTTGTATTCCAGCTTGATGGGGTTCTAATGCC
ACCTGATGGACCGGATACTTGGCCCAAAGCTGATAGCCGCAAGCAATGGC
TTGTGTTTTACAAACTTGATGATATGACATTCACTGGTAAGGGCACCATT
GAAGGGAATGGACAGCCATGGTGGGATCTGCCCTGCAAACCTCACCGGGG
GCCTAACGGATCGACGTCATCAGGTCCATGTGACAGCCCTGCTTTGATTA
GGTTCTTCATGAGCTCAAATTTGGTAGTTAGTGGCTTAACAATTCAAAAC
AGTCCTCAGTTTCACATGAAGTTTGATGGATGCGAAGGCGTCATGATTGA
CAAGCTCTCCATTTCTTCACCAAAACTCAGCCCCAACACCGATGGAATCC
ACATTGAGAACACAAAGTCTGTTGGAATTTACATTCCCTGATAAGCAACG
GTGACCAATGCCTTTCAATTGAAACGGGGGGCTCAAAAGTGGGATATTGG
TGAAGTCCCTTGGGGGGCCAGTCACGGGATCCGCCATGGGAACCCTGGTG
GCCCCAATTCCCAGGCTGGTGTCCCAAAAATAAAATCCCAAAATGGCAAC
ATTAAAAAATAAAAAAAGGGGCCTAGGGATAAAAAAAAGGGAGGGGGGGC
CAAGGCGTGGGTTTTCAAACTTTTTTTTTTGAAAAAATTTCAAAAGGGAA
AAGGGGGAAAAAACGGCTCAAAAAATAAAAACACAAAAAAATCTGGTTCT
TTAAACAAGGGAGGGGGGTTTAAAAACACCCAAACCCCCCCCCCAAAATT
TTTTTTTTTCTCCAAACGGGA
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