DY263044

Overview
NameDY263044
Unique NameDY263044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1350
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263044_ssr222 microsatellite DY263044_ssr222:222..233. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY263044 vs. ExPASy Swiss-Prot
Match: RIO2_DICDI (Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum GN=rio2 PE=3 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 6.395e-98
Identity = 169/273 (61.90%), Postives = 217/273 (79.49%), Query Frame = 1
Query:  241 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHHDSSKYDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDGEVTMIDFPQMVSVSLQKAQMYFERGGDCIFNFFKK 1059
            MKLD   LRYLSKDDFR L AVEMGM+NHE+VP  L+  IA+LK+GGT K ++ L ++KLL HD   YDG++LTYLGYDFLA+KTLV+RGV + VG Q+GVGKESDI+ VA +D   + +KLHRLGR SF+ +K+ RDYL+HR S +WLYLSRLAALKEFA+MKAL ++GFPVP  +D NRHC++MS  +GYPL Q+ QL++P  V+  ++ L+V+LA +GLIH DFNEFNI+I+D+ E+T+IDFPQMVS S   A+MYF+R   CI  FF+K
Sbjct:    1 MKLDPKALRYLSKDDFRTLVAVEMGMKNHELVPVSLICTIANLKYGGTKKSIQTLHKFKLLFHDGRNYDGYKLTYLGYDFLALKTLVSRGVCSYVGNQIGVGKESDIYIVANDDNQEMVLKLHRLGRVSFKTIKNNRDYLKHRKSASWLYLSRLAALKEFAYMKALYENGFPVPTPIDYNRHCIVMSRARGYPLTQIVQLRHPSKVYSDLMNLIVKLASYGLIHGDFNEFNILINDEEEITLIDFPQMVSTSHLNAEMYFDRDVTCIRVFFEK 273          
BLAST of DY263044 vs. ExPASy Swiss-Prot
Match: RIOK2_MOUSE (Serine/threonine-protein kinase RIO2 OS=Mus musculus GN=Riok2 PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 3.758e-90
Identity = 162/273 (59.34%), Postives = 211/273 (77.29%), Query Frame = 1
Query:  244 KLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHHDSSK-YDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDGEVTMIDFPQMVSVSLQKAQMYFERGGDCIFNFFKK 1059
            K++V  LRY+S+DDFRVLTAVEMGM+NHEIVP  L+  IASLKHGG  K+L+ L+++KL+  + +K   G+RLT  GYD+LA+KTL +R V  +VG Q+GVGKESDI+ VA E G  LA+KLHRLGRTSFR +K+KRDY +HR++ +WLYLSRL+A+KEFA+MKAL +  FPVP  +D NRH VIM L+ GYPL Q++ +++P SV++  + L+V+L  HGLIH DFNEFN+M+D D  +TMIDFPQMVS S   A+ YF+R   CI  FF K
Sbjct:    3 KVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPCSLIASIASLKHGGCNKILRELVKHKLIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEAGQQLALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYNRHAVIMELINGYPLCQIHHVEDPASVYDEAMELIVKLGNHGLIHGDFNEFNLMLDKDDHITMIDFPQMVSTSHPNAEWYFDRDVKCIREFFMK 275          
BLAST of DY263044 vs. ExPASy Swiss-Prot
Match: RIOK2_HUMAN (Serine/threonine-protein kinase RIO2 OS=Homo sapiens GN=RIOK2 PE=1 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 4.908e-90
Identity = 160/273 (58.61%), Postives = 213/273 (78.02%), Query Frame = 1
Query:  244 KLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHHDSSK-YDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDGEVTMIDFPQMVSVSLQKAQMYFERGGDCIFNFFKK 1059
            K++V  LRY+S+DDFRVLTAVEMGM+NHEIVP  L+  IASLKHGG  KVL+ L+++KL+  + +K   G+RLT  GYD+LA+KTL +R V  +VG Q+GVGKESDI+ VA E+G   A+KLHRLGRTSFR +K+KRDY +HR++ +WLYLSRL+A+KEFA+MKAL +  FPVP  +D NRH V+M L+ GYPL Q++ +++P SV++  + L+V+LA HGLIH DFNEFN+++D+   +TMIDFPQMVS S   A+ YF+R   CI +FF K
Sbjct:    3 KVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHKLIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQFALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESDHITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMK 275          
BLAST of DY263044 vs. ExPASy Swiss-Prot
Match: RIO2_SCHPO (Serine/threonine-protein kinase rio2 OS=Schizosaccharomyces pombe GN=rio2 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 1.481e-78
Identity = 138/268 (51.49%), Postives = 193/268 (72.01%), Query Frame = 1
Query:  262 LRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHH-DSSKYDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDGEVTMIDFPQMVSVSLQKAQMYFERGGDCIFNFFKKS 1062
            +RYLS +DFR LTAVEMG RNHE+VP+ ++++IA ++ G   K L  L  +KL+       Y+G+RLTY GYD+LA+K L  R    +VG Q+GVGKESD++ V  + G    +K+HRLGR SFR+VK+ RDYLR+R + +W YLSRLAA KEFAFMK L +HGFPVP  +D +RHC+IM ++  +PL  V  +++P ++++T++ ++VR A +GLIH DFNEFNI++ +DG   +IDFPQMVS S   AQ YF+R   CI  +F+K+
Sbjct:    1 MRYLSAEDFRTLTAVEMGSRNHEVVPTNMINQIAKIRGGSCTKSLSVLFMHKLIAKVPHISYEGYRLTYAGYDYLALKALSKRASVYSVGNQIGVGKESDVYVVGDQKGKQYILKIHRLGRISFRSVKNNRDYLRNRKTGSWQYLSRLAATKEFAFMKILHEHGFPVPAPIDHSRHCIIMEMIDAFPLRAVTDIRDPPALYQTLMDIIVRFARNGLIHGDFNEFNIIVREDGTAVVIDFPQMVSTSHPDAQFYFDRDVQCIVQYFEKN 268          
BLAST of DY263044 vs. ExPASy Swiss-Prot
Match: RIO2_YEAST (Serine/threonine-protein kinase RIO2 OS=Saccharomyces cerevisiae GN=RIO2 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 2.991e-71
Identity = 137/282 (48.58%), Postives = 191/282 (67.73%), Query Frame = 1
Query:  241 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLK-HGGTYKVLKNLLRYKLLHHDSS-KYDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNS-YNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDD------DGEVTMIDFPQMVSVSLQKAQMYFERGGDCIFNFFKK 1059
            MKLD   +RYL+ DDFRVL AVE G R+HE+VP+ L+H+I+ ++   GT + + +L +  L+    + KYDG+RLTY G D+LA+KT++NR    +VG  +GVGKESDI++V+ ++G    MK+HRLGRTSF +V++ RDYL+  N   NW++LSRLAA KE+ FM  L   GF VP   D +RH V+M L++GYP+ ++ + +N   ++  ++  +V LA  GLIHCDFNEFNIMI D      D    +IDFPQ +S+  Q A  YF+R  DCI  FFKK
Sbjct:    1 MKLDTSHMRYLTTDDFRVLQAVEQGSRSHEVVPTPLIHQISGMRSQSGTNRAISDLAKLSLISKMRNVKYDGYRLTYNGIDYLALKTMLNRDTVYSVGNTIGVGKESDIYKVSDKNGNPRVMKIHRLGRTSFHSVRNNRDYLKKSNQGANWMHLSRLAANKEYQFMSMLYSKGFKVPEPFDNSRHIVVMELIEGYPMRRLRKHKNIPKLYSDLMCFIVDLANSGLIHCDFNEFNIMIKDKLEDENDCGFVVIDFPQCISIQHQDADYYFQRDVDCIRRFFKK 282          
BLAST of DY263044 vs. ExPASy Swiss-Prot
Match: RIO2_METJA (RIO-type serine/threonine-protein kinase Rio2 OS=Methanocaldococcus jannaschii GN=rio2 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.239e-34
Identity = 90/256 (35.16%), Postives = 138/256 (53.91%), Query Frame = 1
Query:  316 MRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHHDSSKYDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFP---VPNAVDCNRHCVIMSLVQGYPL--VQVNQLQNPDSV---FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDGEVTMIDFPQMVSVSLQKAQMYFERGGDCIFNFFKK 1059
            MR+HE VP + + R A +        LK L ++  +   +    G+ ++  GYD LAI   V +G+  A+G +LGVGKE D++ V   DG    +K H+ GRT F   K  R YL  ++  +WLY+SRL A +EF  +  L    FP   VP  ++ NRH +IM  V G  L  + +++  + + +   F  II  V +  E G IH D +EFNI++D++G+  +ID+PQ V      A+ Y +R    +  +FKK
Sbjct:    1 MRHHEWVPLDEIVRKAKMPEKDVLYRLKRLNKFGFVVRSTY---GYAVSMGGYDALAINAFVKKGILKAIGNKLGVGKEGDVYTVLLSDGREAVLKFHKHGRTCFTRGKRYRGYLADKHHISWLYVSRLTAEREFEILNEL----FPIVKVPEPIEWNRHAIIMGKVVGEELKRLDLSEFMSKEEIKDLFWKIIEEVKKAYEIGYIHGDLSEFNILLDENGDFVIIDWPQAVPKYHPDAEFYLKRDIWNVIRYFKK 249          
BLAST of DY263044 vs. ExPASy Swiss-Prot
Match: RIO2_ARCFU (RIO-type serine/threonine-protein kinase Rio2 OS=Archaeoglobus fulgidus GN=rio2 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.406e-28
Identity = 74/264 (28.03%), Postives = 137/264 (51.89%), Query Frame = 1
Query:  271 LSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHHDSSKYDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDGEVTMIDFPQMVSVSLQKAQMYFERGGDCIFNFFKKS 1062
            + K  +R++ A+   + ++E VP +L+   A +       +LK L   +++ +    Y+G   T++G    ++  LV  G   A+G+ +G GKES +F    E      +K H++G TSF+ VK KRDY       ++  L+  +A  EF  ++ L+  G  VP       + V+M L+    L +V +++NPD V + I+  V +    G++H D +++N+++ ++G + +IDFPQ V V  +  +   ER    I  +F ++
Sbjct:   10 MGKHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDYEGSTFTFIGLSLYSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDY----GDLHFSVLAIRSARNEFRALQKLQ--GLAVPKVYAWEGNAVLMELIDAKELYRV-RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEG-IWIIDFPQSVEVGEEGWREILERDVRNIITYFSRT 265          
BLAST of DY263044 vs. ExPASy Swiss-Prot
Match: YOT3_CAEEL (Putative RIO-type serine/threonine-protein kinase 3 OS=Caenorhabditis elegans GN=riok-3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.844e-12
Identity = 49/198 (24.75%), Postives = 101/198 (51.01%), Query Frame = 1
Query:  499 VNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSY-NWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV--QGYPLVQVNQLQ-------NPDSVFETIIGLVVRL-AEHGLIHCDFNEFNIMIDDDGEVTMIDFPQMVSVSLQKAQMYFERGGDCIFNFFKK 1059
            +N+GVF +V   +  GKES +   A++  T  A+K+++   T+    K++ +Y++    + N   + ++ A +EF  +  +  HG P P  V   R+ ++MS +  QG    ++  ++          +V++ +  ++ R+  E  L+H D +EFN+++  D +V +ID  Q + +S  ++  +  R    I  FF +
Sbjct:  241 INQGVFDSVDGIIATGKESAVLHAAQDSATSYAIKVYK---TTLSEFKNRSEYVKDDFRFKNPRGVLKIWAEREFMNLSRMAKHGLPCPQPVKVRRNVLVMSFLGDQGLAAPRLKNVEWEFFTDDERRNVYDQVQSIMCRMYKECLLVHADLSEFNLLLTPDNKVHVIDVSQAMDLSHPRSLQFLTRDIQNIITFFTR 435          
The following BLAST results are available for this feature:
BLAST of DY263044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RIO2_DICDI6.395e-9861.90Serine/threonine-protein kinase rio2 OS=Dictyostel... [more]
RIOK2_MOUSE3.758e-9059.34Serine/threonine-protein kinase RIO2 OS=Mus muscul... [more]
RIOK2_HUMAN4.908e-9058.61Serine/threonine-protein kinase RIO2 OS=Homo sapie... [more]
RIO2_SCHPO1.481e-7851.49Serine/threonine-protein kinase rio2 OS=Schizosacc... [more]
RIO2_YEAST2.991e-7148.58Serine/threonine-protein kinase RIO2 OS=Saccharomy... [more]
RIO2_METJA2.239e-3435.16RIO-type serine/threonine-protein kinase Rio2 OS=M... [more]
RIO2_ARCFU1.406e-2828.03RIO-type serine/threonine-protein kinase Rio2 OS=A... [more]
YOT3_CAEEL1.844e-1224.75Putative RIO-type serine/threonine-protein kinase ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10CF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263044 ID=DY263044; Name=DY263044; organism=Citrus clementina; type=EST; length=1350bp
AAAACGAAACCAAAACCCCACATCGCTGCCGACCTTCGCTGCGACTCTGC
CGACCTTTGCTGCGACTCTGCCGACCTTTGCTGCCTTCTTTGCTTCTCGC
TTTCACTAATCGCTGCCGCGGCAGCCTTTCGGTTTCGGTTCACTGCCGAC
CTTTGCTTTTTTGCTTCTCGCCGTCTCCACTCTCCTGTCCACTGCCGCTG
CCGTTGCTGCTTCCTTCCGTCGCCAGCCAGCCAACCAGGGATGAAGCTTG
ATGTTGATGTGTTACGTTATCTCTCAAAGGATGATTTCAGGGTTCTCACT
GCCGTTGAAATGGGCATGAGAAATCATGAAATTGTACCTTCGGAACTCGT
GCACCGAATTGCTTCTCTGAAGCATGGAGGCACCTACAAGGTTTTGAAGA
ATTTGCTTAGGTACAAGTTGTTGCACCATGACTCTTCCAAATATGATGGG
TTTAGGCTTACGTACCTTGGTTATGATTTTCTTGCGATTAAGACCTTGGT
AAATCGTGGGGTGTTTACAGCTGTAGGACGTCAACTTGGGGTTGGAAAAG
AATCTGATATCTTTGAGGTTGCACGGGAAGATGGTACCGTTTTAGCGATG
AAGTTGCATAGGCTTGGGAGAACTTCTTTTAGGGCTGTCAAATCTAAGCG
TGATTACTTGAGGCATCGTAATAGTTACAATTGGCTTTATTTGTCCCGAC
TTGCTGCTCTCAAAGAATTCGCCTTTATGAAGGCTTTGGAAGATCATGGT
TTCCCTGTTCCAAATGCCGTGGACTGTAATAGGCATTGTGTTATTATGTC
TCTAGTCCAAGGCTATCCACTTGTGCAAGTGAATCAATTACAAAATCCAG
ACTCTGTTTTTGAAACTATCATTGGTCTTGTTGTTCGATTGGCAGAACAT
GGTCTTATTCACTGTGACTTCAACGAATTCAACATTATGATTGATGATGA
TGGAGAGGTAACGATGATTGATTTCCCACAAATGGTGTCCGTATCACTTC
AGAAGGCTCAAATGTACTTTGAACGTGGAGGTGATTGCATCTTTAATTTT
TTCAAAAAGAGTTCCCCCCTAAATTTCAGAAACCAACAAATGGGGAAGGA
TGGTCAAAAATAAACCAAAAAGAAAGGTAATAAGGTTTCCTCTGCTTTCA
AAATCAAAAAAGTCCCGGCTTTTAAAAAAAGGAAAATGGCGGGCCCAGGG
GGGTTTTTACAAAAAGGAAATAAGGAGTCTTTTTAAAAAAATTTATAAGG
AGAAGAAAAATTTAGGGGGAAGAACGGGGGTTTCTTGAGAAATGAAAAAA
GAGAAAAGAGGGGAAGAGAGGGGAAAAAAAGAGAAACTAAAAAAACAAAA
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