DY263046 | Citrus Genome Database

Overview


Name	DY263046
Unique Name	DY263046
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1250

Libraries


Library Name	Type
CitNFL	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig11638	contig	Ccv1_Contig11638:162..1412.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: MSI3_ARATH (WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana GN=MSI3 PE=1 SV=2)

HSP 1 Score: 457.988 bits (1177), Expect = 1.631e-149
Identity = 208/291 (71.48%), Postives = 251/291 (86.25%), Query Frame = 2

Query:   11 MAAEE--QDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            MAAEE   +A LDQVEEEF++WK+NTPFLYDL++SHPLEWPSLT+HWVPS P PYS DP FAVHK +LGTHTS    +FLM+AD V+PT D+E  +GG+++ P++PKVEI QKIRVDGEVNRARCMPQKP LVG KTS  EV++FD A+ + K Q  +CDPDLRL GH++EGYGL+WS FKEGYL+SGS D +ICLWDVSA A DKV++ MHVYE H+S++EDV+WH+KNEN+FGSAGDDCQL+IWDLRTNQ Q +VK HE+E+NYLSFNP+NEWVLATASSD+TVALFD+
Sbjct:    1 MAAEEGKDEAGLDQVEEEFSIWKRNTPFLYDLMISHPLEWPSLTLHWVPSTPIPYSKDPYFAVHKLILGTHTSGGAQDFLMVADVVIPTPDAEPGLGGRDQEPIVPKVEIKQKIRVDGEVNRARCMPQKPTLVGAKTSGSEVFLFDYARLSGKPQTSECDPDLRLMGHEQEGYGLAWSSFKEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDL 291

HSP 2 Score: 94.7449 bits (234), Expect = 1.631e-149
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 3

Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWELYRIGDKQL--ELNAEGGPS*TPFPPGRSQGPKY*NFP*NKNDP 1130
            RK+T PLH+LS H  EVF+VEWDP HETVLASS ++RRLMVW++ R+GD+QL  EL+AE GP    F  G  +  K  +F  NK++P
Sbjct:  292 RKLTAPLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSHGGHKA-KISDFAWNKDEP 377

HSP 3 Score: 73.1738 bits (178), Expect = 3.686e-12
Identity = 43/178 (24.16%), Postives = 86/178 (48.31%), Query Frame = 2

Query:  395 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL-RTNQTQQRVK---------------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAE 880
            N+ G+    C++ ++D      + Q        +K H++E   LS++PF E  L + S D+ + L+D+      K+   +HV   HE  V  V W   +E +  S+G+D +LM+WD+ R    Q  ++                H+ +++  ++N    WV+++ + D ++ ++ +AE
Sbjct:  232 NIFGSAGDDCQLVIWDLRTNQMQHQ--------VKVHEREINYLSFNPFNEWVLATASSDSTVALFDLR-----KLTAPLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMAE 396

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BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: MSI2_ARATH (WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1)

HSP 1 Score: 451.055 bits (1159), Expect = 6.502e-126
Identity = 212/303 (69.97%), Postives = 247/303 (81.52%), Query Frame = 2

Query:   23 EQDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAEDDCAVTHFK*SHRRSV 928
            +++  + QVEE+F+VWKKNTPFLYDL++SHPLEWPSLTVHWVPS P PY AD  F VHK +LGTHTS    +FLM+AD V PT ++E  +GG N++P IPKVEI Q+IRVDGEVNRARCMPQKP LVG KTS CEV++FD AK A K Q  +CDPDLRL GHDKEGYGLSWSPFKEGYL+SGS D KICLWDVSA  QDKV++AM VYE HES + DVSWH+KNENLFGSAG+D +L+IWD RTNQ Q +VK HE+EVNYLSFNP+NEWVLATASSD+TVALFD+ + + A  H   SH   V
Sbjct:    6 KEETGMGQVEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYFGVHKLILGTHTSGSAQDFLMVADVVTPTPNAEPGIGGANQDPFIPKVEIRQRIRVDGEVNRARCMPQKPTLVGAKTSGCEVFLFDYAKHAAKSQTSECDPDLRLVGHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLN-APLHVMSSHEGEV 307

HSP 2 Score: 94.7449 bits (234), Expect = 1.183e-18
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 3

Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWELYRIGDKQL--ELNAEGGPS*TPFPPGRSQGPKY*NFP*NKNDP 1130
            RK+  PLH++SSH  EVF+VEWDP HETVLASS ++RRLMVW+L R+G++QL  EL+AE GP    F  G  +  K  +F  NKN+P
Sbjct:  291 RKLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKA-KISDFAWNKNEP 376

HSP 3 Score: 72.0182 bits (175), Expect = 8.211e-12
Identity = 40/146 (27.40%), Postives = 77/146 (52.74%), Query Frame = 2

Query:  491 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL-RTNQTQQRVK---------------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAE 880
            ++K H++E   LS++PF E  L + S D+ + L+D+      K+   +HV  +HE  V  V W   +E +  S+G+D +LM+WDL R  + Q  ++                H+ +++  ++N    WV+A+ + D ++ ++ +AE
Sbjct:  255 QVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLR-----KLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMAE 395

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BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: RBP4B_XENLA (Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-B PE=1 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 4.824e-94
Identity = 150/290 (51.72%), Postives = 198/290 (68.28%), Query Frame = 2

Query:   47 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENP--------VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            + EE+ +WKKNTPFLYDL+++H LEWPSLT  W+P   +P   D  F++H+ VLGTHTS++  N L+IA   LP  D++ +    +           V  K+EI  KI  +GEVNRAR MPQ P ++ TKT SC+V VFD  K   K     +C+PDLRL+GH KEGYGLSW+P   G L+S S D+ ICLWD+SA+ ++ KV+DA  ++  H +VVEDVSWHL +E+LFGS  DD +LMIWD R+N T +    V AH  EVN LSFNPY+E++LAT S+D TVAL+D+
Sbjct:   17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKD--FSIHRLVLGTHTSDE-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSCDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303

HSP 2 Score: 71.2478 bits (173), Expect = 4.824e-94
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 3

Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWELYRIGDKQLELNAEGGPS*TPFPPGRSQGPKY*NFP*NKNDP 1130
            R + + LH   SH +E+F+V+W P++ET+LASS  +RRL VW+L +IG++Q   +AE GP    F  G     K  +F  N N+P
Sbjct:  304 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG-GHTAKISDFSWNPNEP 387

HSP 3 Score: 71.2478 bits (173), Expect = 1.401e-11
Identity = 40/148 (27.03%), Postives = 69/148 (46.62%), Query Frame = 2

Query:  482 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAED 883
            P   +  H  E   LS++P+ E  L +GS D  + LWD+  L        +H +E+H+  +  V W   NE +  S+G D +L +WDL     +Q  +               H  +++  S+NP   WV+ + S D  + ++ +AE+
Sbjct:  265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407

[Close]

BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: RBBP4_HUMAN (Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 294.664 bits (753), Expect = 1.823e-93
Identity = 149/290 (51.38%), Postives = 198/290 (68.28%), Query Frame = 2

Query:   47 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENP--------VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            + EE+ +WKKNTPFLYDL+++H LEWPSLT  W+P   +P   D  F++H+ VLGTHTS++  N L+IA   LP  D++ +    +           V  K+EI  KI  +GEVNRAR MPQ P ++ TKT S +V VFD  K   K     +C+PDLRL+GH KEGYGLSW+P   G+L+S S D+ ICLWD+SA+ ++ KV+DA  ++  H +VVEDVSWHL +E+LFGS  DD +LMIWD R+N T +    V AH  EVN LSFNPY+E++LAT S+D TVAL+D+
Sbjct:   17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSDE-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303

HSP 2 Score: 71.2478 bits (173), Expect = 1.823e-93
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 3

Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWELYRIGDKQLELNAEGGPS*TPFPPGRSQGPKY*NFP*NKNDP 1130
            R + + LH   SH +E+F+V+W P++ET+LASS  +RRL VW+L +IG++Q   +AE GP    F  G     K  +F  N N+P
Sbjct:  304 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG-GHTAKISDFSWNPNEP 387

HSP 3 Score: 71.2478 bits (173), Expect = 1.401e-11
Identity = 40/148 (27.03%), Postives = 69/148 (46.62%), Query Frame = 2

Query:  482 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAED 883
            P   +  H  E   LS++P+ E  L +GS D  + LWD+  L        +H +E+H+  +  V W   NE +  S+G D +L +WDL     +Q  +               H  +++  S+NP   WV+ + S D  + ++ +AE+
Sbjct:  265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407

[Close]

BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: RBBP4_CHICK (Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 294.664 bits (753), Expect = 1.823e-93
Identity = 149/290 (51.38%), Postives = 198/290 (68.28%), Query Frame = 2

Query:   47 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENP--------VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            + EE+ +WKKNTPFLYDL+++H LEWPSLT  W+P   +P   D  F++H+ VLGTHTS++  N L+IA   LP  D++ +    +           V  K+EI  KI  +GEVNRAR MPQ P ++ TKT S +V VFD  K   K     +C+PDLRL+GH KEGYGLSW+P   G+L+S S D+ ICLWD+SA+ ++ KV+DA  ++  H +VVEDVSWHL +E+LFGS  DD +LMIWD R+N T +    V AH  EVN LSFNPY+E++LAT S+D TVAL+D+
Sbjct:   17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSDE-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303

HSP 2 Score: 71.2478 bits (173), Expect = 1.823e-93
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 3

Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWELYRIGDKQLELNAEGGPS*TPFPPGRSQGPKY*NFP*NKNDP 1130
            R + + LH   SH +E+F+V+W P++ET+LASS  +RRL VW+L +IG++Q   +AE GP    F  G     K  +F  N N+P
Sbjct:  304 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG-GHTAKISDFSWNPNEP 387

HSP 3 Score: 71.2478 bits (173), Expect = 1.401e-11
Identity = 40/148 (27.03%), Postives = 69/148 (46.62%), Query Frame = 2

Query:  482 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAED 883
            P   +  H  E   LS++P+ E  L +GS D  + LWD+  L        +H +E+H+  +  V W   NE +  S+G D +L +WDL     +Q  +               H  +++  S+NP   WV+ + S D  + ++ +AE+
Sbjct:  265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407

[Close]

BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: RBBP4_BOVIN (Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 294.664 bits (753), Expect = 1.823e-93
Identity = 149/290 (51.38%), Postives = 198/290 (68.28%), Query Frame = 2

Query:   47 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENP--------VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            + EE+ +WKKNTPFLYDL+++H LEWPSLT  W+P   +P   D  F++H+ VLGTHTS++  N L+IA   LP  D++ +    +           V  K+EI  KI  +GEVNRAR MPQ P ++ TKT S +V VFD  K   K     +C+PDLRL+GH KEGYGLSW+P   G+L+S S D+ ICLWD+SA+ ++ KV+DA  ++  H +VVEDVSWHL +E+LFGS  DD +LMIWD R+N T +    V AH  EVN LSFNPY+E++LAT S+D TVAL+D+
Sbjct:   17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSDE-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303

HSP 2 Score: 71.2478 bits (173), Expect = 1.823e-93
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 3

Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWELYRIGDKQLELNAEGGPS*TPFPPGRSQGPKY*NFP*NKNDP 1130
            R + + LH   SH +E+F+V+W P++ET+LASS  +RRL VW+L +IG++Q   +AE GP    F  G     K  +F  N N+P
Sbjct:  304 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG-GHTAKISDFSWNPNEP 387

HSP 3 Score: 71.2478 bits (173), Expect = 1.401e-11
Identity = 40/148 (27.03%), Postives = 69/148 (46.62%), Query Frame = 2

Query:  482 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAED 883
            P   +  H  E   LS++P+ E  L +GS D  + LWD+  L        +H +E+H+  +  V W   NE +  S+G D +L +WDL     +Q  +               H  +++  S+NP   WV+ + S D  + ++ +AE+
Sbjct:  265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407

[Close]

BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: RBBP4_MOUSE (Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=4)

HSP 1 Score: 293.508 bits (750), Expect = 4.047e-93
Identity = 149/290 (51.38%), Postives = 197/290 (67.93%), Query Frame = 2

Query:   47 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENP--------VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL-AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            + EE+ +WKKNTPFLYDL+++H LEWPSLT  W+P   +P   D  F++H+ VLGTHTS++  N L+IA   LP  D++ +    +           V  K+EI  KI  +GEVNRAR MPQ P ++ TKT S +V VFD  K   K     +C+PDLRL+GH KEGYGLSW+P   G+L+S S D+ ICLWD+SA+  + KV+DA  ++  H +VVEDVSWHL +E+LFGS  DD +LMIWD R+N T +    V AH  EVN LSFNPY+E++LAT S+D TVAL+D+
Sbjct:   17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSDE-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKKGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303

HSP 2 Score: 71.2478 bits (173), Expect = 4.047e-93
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 3

Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWELYRIGDKQLELNAEGGPS*TPFPPGRSQGPKY*NFP*NKNDP 1130
            R + + LH   SH +E+F+V+W P++ET+LASS  +RRL VW+L +IG++Q   +AE GP    F  G     K  +F  N N+P
Sbjct:  304 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG-GHTAKISDFSWNPNEP 387

HSP 3 Score: 71.2478 bits (173), Expect = 1.401e-11
Identity = 40/148 (27.03%), Postives = 69/148 (46.62%), Query Frame = 2

Query:  482 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAED 883
            P   +  H  E   LS++P+ E  L +GS D  + LWD+  L        +H +E+H+  +  V W   NE +  S+G D +L +WDL     +Q  +               H  +++  S+NP   WV+ + S D  + ++ +AE+
Sbjct:  265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407

[Close]

BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: RBBP4_PONAB (Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3)

HSP 1 Score: 293.123 bits (749), Expect = 5.279e-93
Identity = 149/290 (51.38%), Postives = 197/290 (67.93%), Query Frame = 2

Query:   47 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENP--------VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            + EE  +WKKNTPFLYDL+++H LEWPSLT  W+P   +P   D  F++H+ VLGTHTS++  N L+IA   LP  D++ +    +           V  K+EI  KI  +GEVNRAR MPQ P ++ TKT S +V VFD  K   K     +C+PDLRL+GH KEGYGLSW+P   G+L+S S D+ ICLWD+SA+ ++ KV+DA  ++  H +VVEDVSWHL +E+LFGS  DD +LMIWD R+N T +    V AH  EVN LSFNPY+E++LAT S+D TVAL+D+
Sbjct:   17 INEEHKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSDE-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303

HSP 2 Score: 71.2478 bits (173), Expect = 5.279e-93
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 3

Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWELYRIGDKQLELNAEGGPS*TPFPPGRSQGPKY*NFP*NKNDP 1130
            R + + LH   SH +E+F+V+W P++ET+LASS  +RRL VW+L +IG++Q   +AE GP    F  G     K  +F  N N+P
Sbjct:  304 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG-GHTAKISDFSWNPNEP 387

HSP 3 Score: 71.2478 bits (173), Expect = 1.401e-11
Identity = 40/148 (27.03%), Postives = 69/148 (46.62%), Query Frame = 2

Query:  482 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAED 883
            P   +  H  E   LS++P+ E  L +GS D  + LWD+  L        +H +E+H+  +  V W   NE +  S+G D +L +WDL     +Q  +               H  +++  S+NP   WV+ + S D  + ++ +AE+
Sbjct:  265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407

[Close]

BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: RBBP4_XENTR (Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 292.738 bits (748), Expect = 6.887e-93
Identity = 149/290 (51.38%), Postives = 197/290 (67.93%), Query Frame = 2

Query:   47 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENP--------VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            + EE+ +WKKNTPFLYDL+++H LEWPSLT  W+P   +P   D  F++H+ VLGTHTS++  N L+IA   LP  D++ +    +           V  K+EI  KI  +GEVNRAR MPQ P ++ TKT S +V VFD  K   K     +C+PDLRL+GH KEGYGLSW+P   G L+S S D+ ICLWD+SA+ ++ KV+DA  ++  H +VVEDVSWHL +E+LFGS  DD +LMIWD R+N T +    V AH  EVN LSFNPY+E++LAT S+D TVAL+D+
Sbjct:   17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKD--FSIHRLVLGTHTSDE-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303

HSP 2 Score: 71.2478 bits (173), Expect = 6.887e-93
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 3

Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWELYRIGDKQLELNAEGGPS*TPFPPGRSQGPKY*NFP*NKNDP 1130
            R + + LH   SH +E+F+V+W P++ET+LASS  +RRL VW+L +IG++Q   +AE GP    F  G     K  +F  N N+P
Sbjct:  304 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG-GHTAKISDFSWNPNEP 387

HSP 3 Score: 71.2478 bits (173), Expect = 1.401e-11
Identity = 40/148 (27.03%), Postives = 69/148 (46.62%), Query Frame = 2

Query:  482 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAED 883
            P   +  H  E   LS++P+ E  L +GS D  + LWD+  L        +H +E+H+  +  V W   NE +  S+G D +L +WDL     +Q  +               H  +++  S+NP   WV+ + S D  + ++ +AE+
Sbjct:  265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407

[Close]

BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: CAF1_DROME (Probable histone-binding protein Caf1 OS=Drosophila melanogaster GN=Caf1 PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 2.602e-92
Identity = 151/304 (49.67%), Postives = 207/304 (68.09%), Query Frame = 2

Query:   14 AAEEQDASLDQ--VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENP---------VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            AAE  D ++++  + EE+ +WKKNTPFLYDL+++H LEWPSLT  W+P   +    D  ++VH+ +LGTHTS++  N L+IA   LP++D++ + G   +N          V  K+EI  KI  +GEVNRAR MPQ   ++ TKT S +V VFD  K   K +   +C PDLRL+GH KEGYGLSW+P   GYL+S S D+ ICLWD++A  ++ +VIDA +++  H +VVEDV+WHL +E+LFGS  DD +LMIWD R N T +    V AH  EVN LSFNPY+E++LAT S+D TVAL+D+
Sbjct:    8 AAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKD--YSVHRLILGTHTSDE-QNHLLIASVQLPSEDAQFD-GSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307

HSP 2 Score: 71.2478 bits (173), Expect = 2.602e-92
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 3

Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWELYRIGDKQLELNAEGGPS*TPFPPGRSQGPKY*NFP*NKNDP 1130
            R + + LH   SH +E+F+V+W P++ET+LASS  +RRL VW+L +IG++Q   +AE GP    F  G     K  +F  N N+P
Sbjct:  308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEP 391

HSP 3 Score: 71.633 bits (174), Expect = 1.072e-11
Identity = 39/148 (26.35%), Postives = 69/148 (46.62%), Query Frame = 2

Query:  482 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAED 883
            P   +  H  E   LS++P+ E  L +GS D  + LWD+  L        +H +E+H+  +  V W   NE +  S+G D +L +WDL     +Q  +               H  +++  S+NP   W++ + S D  + ++ +AE+
Sbjct:  269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411

The following BLAST results are available for this feature:

BLAST of DY263046 vs. ExPASy Swiss-Prot

BLAST of DY263046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58


Match Name	E-value	Identity	Description
MSI3_ARATH	1.631e-149	71.48	WD-40 repeat-containing protein MSI3 OS=Arabidopsi...	[more]
MSI2_ARATH	6.502e-126	69.97	WD-40 repeat-containing protein MSI2 OS=Arabidopsi...	[more]
RBP4B_XENLA	4.824e-94	51.72	Histone-binding protein RBBP4-B OS=Xenopus laevis ...	[more]
RBBP4_HUMAN	1.823e-93	51.38	Histone-binding protein RBBP4 OS=Homo sapiens GN=R...	[more]
RBBP4_CHICK	1.823e-93	51.38	Histone-binding protein RBBP4 OS=Gallus gallus GN=...	[more]
RBBP4_BOVIN	1.823e-93	51.38	Histone-binding protein RBBP4 OS=Bos taurus GN=RBB...	[more]
RBBP4_MOUSE	4.047e-93	51.38	Histone-binding protein RBBP4 OS=Mus musculus GN=R...	[more]
RBBP4_PONAB	5.279e-93	51.38	Histone-binding protein RBBP4 OS=Pongo abelii GN=R...	[more]
RBBP4_XENTR	6.887e-93	51.38	Histone-binding protein RBBP4 OS=Xenopus tropicali...	[more]
CAF1_DROME	2.602e-92	49.67	Probable histone-binding protein Caf1 OS=Drosophil...	[more]

Pages

Properties


Property Name	Value
Genbank description	IC0AAA10CF10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY263046 ID=DY263046; Name=DY263046; organism=Citrus clementina; type=EST; length=1250bp
CGGACGAACAATGGCAGCAGAGGAGCAAGACGCGAGCTTGGATCAAGTGG
AGGAGGAGTTCACGGTATGGAAGAAGAACACGCCGTTTTTGTACGATCTG
ATTGTCTCTCACCCGTTAGAGTGGCCCTCGCTTACCGTCCACTGGGTCCC
ATCGCCTCCGCAACCCTACTCAGCGGACCCCACTTTCGCGGTGCACAAGT
TCGTGCTCGGGACCCACACCTCCGAGGATTTTCCCAACTTTCTCATGATC
GCCGATGCCGTGCTGCCCACCAAAGACTCGGAGTCTAACGTCGGCGGCAA
AAATGAAAATCCTGTCATCCCCAAGGTGGAGATAGCGCAGAAGATACGTG
TTGATGGGGAAGTGAATAGAGCACGGTGTATGCCACAGAAACCCAATCTT
GTTGGTACAAAGACTAGCAGTTGTGAGGTGTATGTGTTTGACTGTGCCAA
ACAGGCAGAAAAGCAGCAAGATGATTGTGATCCTGATCTGAGGTTGAAGG
GTCATGATAAAGAGGGTTATGGATTGTCTTGGAGTCCCTTTAAGGAAGGT
TATCTTGTGAGTGGTTCCCATGACAATAAGATTTGCTTGTGGGATGTGTC
TGCGTTGGCTCAAGACAAAGTGATTGATGCAATGCATGTCTATGAGGCTC
ATGAAAGTGTGGTTGAAGATGTGTCGTGGCATTTGAAGAATGAGAATTTA
TTTGGGTCTGCAGGCGATGATTGCCAACTGATGATCTGGGACTTGCGCAC
TAATCAAACTCAACAGCGTGTAAAAGCTCATGAGAAAGAGGTTAACTATC
TATCTTTTAATCCATACAATGAATGGGTTCTGGCGACTGCATCTTCAGAC
ACTACTGTTGCTTTGTTTGATATTGCGGAAGATGACTGTGCCGTTACACA
TTTTAAGTAGTCACACAGAAGAAGTGTTCCGGGTTGAATGGGATCCCTAT
CACGAAACCGTGCTGGCTTCTTCAGCTGATGAACGAAGGCTCATGGTTTG
GGAACTTTACCGGATTGGGGACAAGCAGTTGGAATTAAATGCCGAAGGAG
GGCCTTCCTGAACCCCTTTTCCTCCAGGGAGGTCACAGGGCCCCAAATAT
TAAAATTTCCCTTGAAACAAAAATGACCCGGGGGGGTTCTTTTCAGGTGG
GGCCCAACAAAAAAAACGTGTTCTGGGGCTTGGGGCAAATGGACAAAAAA
AACTTTTATCCGGAAGAACCAAAAAAAAAATTTTTCTCTCCCCCCCCCCC