DY263047

Overview
NameDY263047
Unique NameDY263047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1183
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263047_ssr24 microsatellite DY263047_ssr24:24..33. BLAST: Citrus ESTs to Prunus persica proteins V1
DY263047_ssr32 microsatellite DY263047_ssr32:32..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY263047 vs. ExPASy Swiss-Prot
Match: PLSB_CUCSA (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.292e-76
Identity = 133/215 (61.86%), Postives = 169/215 (78.60%), Query Frame = 3
Query:  285 SFSSFNV-RAMAKMVQDREXXXXXXXXXDEQNKKMLNIEVNHSRTFLDVRSEQDLLSGIGREVEAGRLPSNLANGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRSSYVGNVSLFFEMEKKLNQGHNIVLISNHQTEADPAIIALLLESTNPHVAEKLNYIARGQKYNQSPL 926
            SF  F+  RAMA+++QD+E           +N      +  HSR FLD+RSE++LLS I RE EAG+LPSN+A GMEELY NYKNAVF+SGN +ADEIVLSNM VA DR+LLD+E+PF FS +HK++REPFDYY FGQNY+RPL+DF +S+VGN+SLF ++E+KL+QGHN+VLISNHQTEADPAII+LLLE TNP++AE + Y+A G +    PL
Sbjct:   70 SFLRFSASRAMAELIQDKESAHTPSTTDVTRN------DPPHSRAFLDLRSEEELLSCIRRETEAGKLPSNVAAGMEELYQNYKNAVFESGNPKADEIVLSNMTVALDRILLDVEDPFMFSPHHKAIREPFDYYTFGQNYVRPLIDFENSFVGNLSLFKDIEEKLHQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENMIYVA-GDRVIADPL 277          

HSP 2 Score: 44.669 bits (104), Expect = 1.292e-76
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 1
Query:  898 GDRSITNPLCKPFNHGKETK*VWNSKKPMAEVPEPN*NEKGK*KPVILKEMGLAFKGGEQ 1077
            GDR I +PLCKPF+ G+    V+ SKK M ++PE     K K     LKEM L  +GG Q
Sbjct:  269 GDRVIADPLCKPFSIGRNLICVY-SKKHMLDIPELA-ETKRKANTRSLKEMALLLRGGSQ 326          
BLAST of DY263047 vs. ExPASy Swiss-Prot
Match: PLSB_CUCMO (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Cucurbita moschata PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 7.590e-74
Identity = 126/205 (61.46%), Postives = 160/205 (78.05%), Query Frame = 3
Query:  312 MAKMVQDREXXXXXXXXXDEQNKKMLNIEVNHSRTFLDVRSEQDLLSGIGREVEAGRLPSNLANGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRSSYVGNVSLFFEMEKKLNQGHNIVLISNHQTEADPAIIALLLESTNPHVAEKLNYIARGQKYNQSPL 926
            MA+++QD+E            +      E  HSR FLDVRSE++LLS I +E EAG+LP N+A GMEELY NY+NAV +SGN +ADEIVLSNM VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+DF +S+VGN+SLF ++E+KL QGHN+VLISNHQTEADPAII+LLLE TNP++AE   ++A G +    PL
Sbjct:    1 MAELIQDKESAQSAATAAAASSGYERRNEPAHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVA-GDRVLADPL 204          

HSP 2 Score: 44.2838 bits (103), Expect = 7.590e-74
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query:  898 GDRSITNPLCKPFNHGKETK*VWNSKKPMAEVPEPN*NEKGK*KPVILKEMGLAFKGGEQ 1077
            GDR + +PLCKPF+ G+    V+ SKK M ++PE     K K     LKEM L  +GG Q
Sbjct:  196 GDRVLADPLCKPFSIGRNLICVY-SKKHMFDIPELT-ETKRKANTRSLKEMALLLRGGSQ 253          
BLAST of DY263047 vs. ExPASy Swiss-Prot
Match: PLSB_ARATH (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ATS1 PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 2.193e-73
Identity = 134/231 (58.01%), Postives = 173/231 (74.89%), Query Frame = 3
Query:  234 VSFRSGARRTSATCPCASFSSFNVRAMAKMVQDREXXXXXXXXXDEQNKKMLNIEVNHSRTFLDVRSEQDLLSGIGREVEAGRLPSNLANGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRSSYVGNVSLFFEMEKKLNQGHNIVLISNHQTEADPAIIALLLESTNPHVAEKLNYIARGQKYNQSPL 926
            VSFR  A++     P  S    +VRAM+++VQD+E         +E   +  + E++HSRTFLD RSEQDLLSGI +E EAGRLP+N+A GMEELY NYKNAV  SG SRADE V+SNM+VAFDR+LL +E+P+TF+ YHK++REPFDYYMF   YIRPL+DF++SYVGN S+F E+E K+ QGHNIVLISNHQ+EADPA+I+LLLE+ +P + E +  +A G +    PL
Sbjct:   39 VSFRLTAKKLFLP-PLRSRGGVSVRAMSELVQDKESSVAASIAFNEAAGETPS-ELSHSRTFLDARSEQDLLSGIKKEAEAGRLPANVAAGMEELYWNYKNAVLSSGASRADETVVSNMSVAFDRMLLGVEDPYTFNPYHKAVREPFDYYMFVHTYIRPLIDFKNSYVGNASIFSELEDKIRQGHNIVLISNHQSEADPAVISLLLEAQSPFIGENIKCVA-GDRVITDPL 266          

HSP 2 Score: 38.891 bits (89), Expect = 2.193e-73
Identity = 27/60 (45.00%), Postives = 34/60 (56.67%), Query Frame = 1
Query:  898 GDRSITNPLCKPFNHGKETK*VWNSKKPMAEVPEPN*NEKGK*KPVILKEMGLAFKGGEQ 1077
            GDR IT+PLCKPF+ G+    V+ SKK M + PE   + K K     LKEM    + G Q
Sbjct:  258 GDRVITDPLCKPFSMGRNLICVY-SKKHMNDDPELV-DMKRKANTRSLKEMATMLRSGGQ 315          
BLAST of DY263047 vs. ExPASy Swiss-Prot
Match: PLSB_CARTI (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Carthamus tinctorius PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 4.056e-69
Identity = 117/174 (67.24%), Postives = 143/174 (82.18%), Query Frame = 3
Query:  405 HSRTFLDVRSEQDLLSGIGREVEAGRLPSNLANGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRSSYVGNVSLFFEMEKKLNQGHNIVLISNHQTEADPAIIALLLESTNPHVAEKLNYIARGQKYNQSPL 926
            HSRTF+D RSEQDLLSGI RE+EAG LP ++A  MEELY NYKNAV QS    A++IVLSNM VAFDR+ LD++EPF FS YH+++ EPF+YYMFGQNYIRPLV+FR SYVGNVS+F  ME++L QG  +VLISNHQTEADPA+IAL+LE+TNPH++E + Y+A G +    PL
Sbjct:   94 HSRTFIDARSEQDLLSGIQRELEAGTLPKHIAQAMEELYQNYKNAVLQSAAPHAEDIVLSNMRVAFDRMFLDVKEPFEFSPYHEAILEPFNYYMFGQNYIRPLVNFRESYVGNVSVFGVMEEQLKQGDKVVLISNHQTEADPAVIALMLETTNPHISENIIYVA-GDRVITDPL 266          

HSP 2 Score: 42.3578 bits (98), Expect = 4.056e-69
Identity = 30/73 (41.10%), Postives = 40/73 (54.79%), Query Frame = 1
Query:  898 GDRSITNPLCKPFNHGKETK*VWNSKKPMAEVPEPN*NEKGK*KPVILKEMGLAFKGGEQKKILNGHKVGGRE 1116
            GDR IT+PLCKPF+ G+    V+ SKK M +VPE    +K      +   M L  +GG   KI+     GGR+
Sbjct:  258 GDRVITDPLCKPFSMGRNLLCVY-SKKHMNDVPELAEMKKRSNTRSLKGRMALLLRGG--SKIIWIAPSGGRD 327          
BLAST of DY263047 vs. ExPASy Swiss-Prot
Match: PLSB_PEA (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Pisum sativum GN=GPAT PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.398e-65
Identity = 109/163 (66.87%), Postives = 139/163 (85.28%), Query Frame = 3
Query:  408 SRTFLDVRSEQDLLSGIGREVEAGRLPSNLANGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRSSYVGNVSLFFEMEKKLNQGHNIVLISNHQTEADPAIIALLLESTNPHVAEKLNYIA 896
            SRTFL+ ++EQD+LSGI +EVEAG LP+++A GMEE+Y NYK+AV +SG+ +A+EIVLSNM    DR+ LD++EPF F ++HK+ REPFDYYMFGQNYIRPLVDF +SYVGN+ LF +ME++L QGHNI+L+SNHQ+EADPAIIALLLE   PH+AE L Y+A
Sbjct:   93 SRTFLNAQNEQDVLSGIKKEVEAGTLPASIAAGMEEVYLNYKSAVIKSGDPKANEIVLSNMTALLDRIFLDVKEPFVFEAHHKAKREPFDYYMFGQNYIRPLVDFETSYVGNMPLFIQMEEQLKQGHNIILMSNHQSEADPAIIALLLEMRLPHIAENLIYVA 255          

HSP 2 Score: 37.3502 bits (85), Expect = 4.398e-65
Identity = 33/80 (41.25%), Postives = 42/80 (52.50%), Query Frame = 1
Query:  898 GDRSITNPLCKPFNHGKETK*VWNSKKPMAEVPEPN*NEKGK*KPVILKEMGLAFKGGEQKKILNGHKVGGRE-TAQNSG 1134
            GDR IT PLCKPF+ G+    V+ SKK M + PE   + K K      KEM +  + G Q  I+     GGR+    NSG
Sbjct:  256 GDRVITVPLCKPFSIGRNLICVY-SKKHMLDNPELV-DMKRKANTRSRKEMAMLLRSGSQ--IIWIAPSGGRDRPVANSG 331          
BLAST of DY263047 vs. ExPASy Swiss-Prot
Match: PLSB_SPIOL (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Spinacia oleracea GN=GAT PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.644e-61
Identity = 120/222 (54.05%), Postives = 152/222 (68.47%), Query Frame = 3
Query:  261 TSATCPCASFSSFNVRAMAKMVQDREXXXXXXXXXDEQNKKMLNIEVNHSRTFLDVRSEQDLLSGIGREVEAGRLPSNLANGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRSSYVGNVSLFFEMEKKLNQGHNIVLISNHQTEADPAIIALLLESTNPHVAEKLNYIARGQKYNQSPL 926
            +S+T   AS+S     A AK V++           D Q        +  SRT+ +VRS ++L+S I RE E GRLP ++A  ME L+H Y+NAV  SG S ADEIVLSNM+V  D VLLDIE+PF F  +HK++REP DYY FGQ+YIRPLVDF +SYVGN+++F EME+KL QG NI+L+SNHQ+EADPA+IALLLE TN  +AE L YIA G +    PL
Sbjct:   71 SSSTSASASYS-----AAAKSVEEENHEIPVKKEDDNQ--------LLRSRTYRNVRSAEELISEIKRESEIGRLPKSVAYAMEGLFHYYRNAVLSSGISHADEIVLSNMSVMLDFVLLDIEDPFVFPPFHKAIREPADYYSFGQDYIRPLVDFGNSYVGNIAIFQEMEEKLKQGDNIILMSNHQSEADPAVIALLLEKTNSLIAENLIYIA-GDRVITDPL 278          

HSP 2 Score: 40.4318 bits (93), Expect = 3.644e-61
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  898 GDRSITNPLCKPFNHGKETK*VWNSKKPMAEVPEPN*NEKGK*KPVILKEMGLAFKGGEQKKILNGHKVGGRE 1116
            GDR IT+PLCKPF+ G+    V+ SKK M + PE   + K +     LKE+ L  +GG   KI+     GGR+
Sbjct:  270 GDRVITDPLCKPFSMGRNLLCVY-SKKHMYDDPELV-DVKKRANTRSLKELVLLLRGG--SKIIWIAPSGGRD 338          
BLAST of DY263047 vs. ExPASy Swiss-Prot
Match: PLSB_PHAVU (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Phaseolus vulgaris GN=PLSB PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 5.213e-61
Identity = 112/173 (64.74%), Postives = 142/173 (82.08%), Query Frame = 3
Query:  408 SRTFLDVRSEQDLLSGIGREVEAGRLPSNLANGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRSSYVGNVSLFFEMEKKLNQGHNIVLISNHQTEADPAIIALLLESTNPHVAEKLNYIARGQKYNQSPL 926
            SRTFL+ +SEQD+ +GI +EVEAG LP+N+A GMEE+Y+NYK AV QSG+ +A+EIVLSNM    DRV LD+ +PF F  +HK+ REPFDYY+FGQNYIRPLVDF+++YVGN+ LF EME+KL QGHNI+L+SNHQTEADPAII+LLLE+  P++AE L Y+A G +    PL
Sbjct:   97 SRTFLNAQSEQDVFAGIKKEVEAGSLPANVAAGMEEVYNNYKKAVIQSGDPKANEIVLSNMIALLDRVFLDVTDPFVFQPHHKAKREPFDYYVFGQNYIRPLVDFKNAYVGNMPLFIEMEEKLKQGHNIILMSNHQTEADPAIISLLLETRLPYIAENLTYVA-GDRVITDPL 268          
The following BLAST results are available for this feature:
BLAST of DY263047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PLSB_CUCSA1.292e-7661.86Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_CUCMO7.590e-7461.46Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_ARATH2.193e-7358.01Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_CARTI4.056e-6967.24Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_PEA4.398e-6566.87Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_SPIOL3.644e-6154.05Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_PHAVU5.213e-6164.74Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10CF11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263047 ID=DY263047; Name=DY263047; organism=Citrus clementina; type=EST; length=1183bp
CTTTGCTAGCTTTTGCCCGTTTCCTCTCTCTCTCACTCACTCACTCTGTC
GTTCATTTTTTTCATTTCATTTCCTTTTTTTTTTTTGTTTGACTACTGAT
GTCTTCTCTGTCTCTCACATTCTTCGCCACGACAGCGCCTAGGGTTTTGG
CTCCGTCTTCGTCGTCTAATCCGAAGCTCTCTCCTTCTTCTTATTCTTTT
TCAGCAATAACCGCGCGTCGGCATTCGACTGCGGTGTCGTTTCGATCCGG
TGCGCGGAGGACTTCCGCCACGTGTCCTTGTGCGTCCTTTAGCTCCTTCA
ACGTTCGAGCAATGGCTAAGATGGTTCAGGACAGGGAGTCCGCCGTGTCG
TCGTCCTCGGCGAGTGACGAGCAGAACAAGAAGATGCTCAATATAGAGGT
TAATCACTCCCGTACGTTTCTCGACGTTCGTTCCGAGCAAGATCTTCTGT
CTGGAATTGGCAGGGAAGTTGAAGCAGGAAGGCTGCCATCAAATCTTGCC
AATGGGATGGAAGAGTTGTATCACAATTATAAAAATGCAGTCTTTCAAAG
TGGAAATTCTAGGGCTGATGAGATTGTATTGTCAAATATGGCTGTTGCAT
TTGATCGAGTATTGCTGGACATTGAGGAACCTTTTACGTTCTCATCTTAT
CACAAGTCAATGAGAGAGCCTTTTGACTATTACATGTTTGGTCAAAATTA
TATACGACCTTTGGTTGATTTCAGAAGTTCATACGTTGGCAATGTATCCC
TTTTCTTTGAAATGGAAAAGAAACTTAACCAGGGCCATAATATCGTATTG
ATCTCTAACCACCAAACTGAAGCAGACCCTGCTATCATTGCTTTATTGCT
TGAATCAACAAACCCACATGTTGCTGAAAAACTGAACTACATAGCAAGGG
GACAGAAGTATAACCAATCCCCTCTGCAAGCCCTTCAACCATGGAAAGGA
AACTAAATAAGTGTGGAATTCAAAAAAACCAATGGCTGAAGTCCCTGAAC
CTAATTGAAATGAAAAAGGAAAATAAAAACCCGTTATTTTGAAGGAAATG
GGTTTGGCTTTTAAAGGGGGGGAACAAAAAAAAATTTTGAATGGGCACAA
AGTGGGGGGAAGGGAAACGGCCCAAAATTCTGGTTAAAAGGAAAAAAGGG
TATTCCCGCCACCCCCTTTTAAACCTTTTTTTT
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